BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0514.0001.p
         (79 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_388572.1| cotJC [Bacillus subtilis] >gi|2833396|sp|Q45538...   132   3e-30
ref|NP_977218.1| cotJC protein [Bacillus cereus ATCC 10987] >gi|...   126   2e-28
ref|NP_830611.1| CotJC protein [Bacillus cereus ATCC 14579] >gi|...   124   6e-28
ref|ZP_00180910.1| hypothetical protein Mther113301 [Moorella th...   107   6e-23
ref|NP_623389.1| Mn-containing catalase [Thermoanaerobacter teng...   100   2e-20

>ref|NP_388572.1| cotJC [Bacillus subtilis]
 sp|Q45538|CTJC_BACSU CotJC protein
 pir||H69605 spore coat peptide assembly protein cotJC - Bacillus subtilis
 gb|AAB17590.1| putative
 emb|CAB12510.1| cotJC [Bacillus subtilis subsp. subtilis str. 168]
          Length = 189

 Score =  132 bits (332), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 76/79 (96%)

Query: 1   VPWTATYIQAKGDPLADLYEDIAAEEKARATYQWLIDMTDDVDLQDSLKFLREREIVHAL 60
           VP+TA+YIQAKGDP+ADLYEDIAAEEKARATYQWLID++DD DL DSL+FLREREIVH++
Sbjct: 111 VPFTASYIQAKGDPIADLYEDIAAEEKARATYQWLIDISDDPDLNDSLRFLREREIVHSM 170

Query: 61  RFKESVQIIIDEREQKRVF 79
           RF+E+V+I+ +ER++K++F
Sbjct: 171 RFREAVEILKEERDKKKIF 189


>ref|NP_977218.1| cotJC protein [Bacillus cereus ATCC 10987]
 gb|AAS39826.1| cotJC protein [Bacillus cereus ATCC 10987]
          Length = 189

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/79 (73%), Positives = 73/79 (92%)

Query: 1   VPWTATYIQAKGDPLADLYEDIAAEEKARATYQWLIDMTDDVDLQDSLKFLREREIVHAL 60
           VP+TATYIQAKGDP+ADLYEDIAAEEKARATYQWLI+++DD D+ DSL+FLREREIVH+ 
Sbjct: 111 VPFTATYIQAKGDPIADLYEDIAAEEKARATYQWLINLSDDPDINDSLRFLREREIVHSQ 170

Query: 61  RFKESVQIIIDEREQKRVF 79
           RF+E+V+I+ +ER++K  F
Sbjct: 171 RFREAVEILKEERDKKIFF 189


>ref|NP_830611.1| CotJC protein [Bacillus cereus ATCC 14579]
 ref|NP_843321.1| cotJC protein [Bacillus anthracis str. Ames]
 gb|AAP07812.1| CotJC protein [Bacillus cereus ATCC 14579]
 gb|AAP24807.1| cotJC protein [Bacillus anthracis str. Ames]
          Length = 189

 Score =  124 bits (312), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 58/79 (73%), Positives = 72/79 (91%)

Query: 1   VPWTATYIQAKGDPLADLYEDIAAEEKARATYQWLIDMTDDVDLQDSLKFLREREIVHAL 60
           VP+TATYIQAKGDP+ADLYEDIAAEEKARATYQWLI+ +DD D+ DSL+FLREREIVH+ 
Sbjct: 111 VPFTATYIQAKGDPIADLYEDIAAEEKARATYQWLINQSDDPDINDSLRFLREREIVHSQ 170

Query: 61  RFKESVQIIIDEREQKRVF 79
           RF+E+V+I+ +ER++K  F
Sbjct: 171 RFREAVEILKEERDRKIYF 189


>ref|ZP_00180910.1| hypothetical protein Mther113301 [Moorella thermoacetica ATCC
           39073]
          Length = 190

 Score =  107 bits (268), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 66/78 (84%)

Query: 2   PWTATYIQAKGDPLADLYEDIAAEEKARATYQWLIDMTDDVDLQDSLKFLREREIVHALR 61
           PWTATYIQ+KGDP+ DL+ED+AAE+KAR+TY++LI ++DD D+ D+LKFLRERE+VH  R
Sbjct: 113 PWTATYIQSKGDPVTDLHEDMAAEQKARSTYEYLIQLSDDPDVSDTLKFLREREVVHFQR 172

Query: 62  FKESVQIIIDEREQKRVF 79
           F E++ ++ D  E+K+ +
Sbjct: 173 FGETLNLVYDYLERKKYY 190


>ref|NP_623389.1| Mn-containing catalase [Thermoanaerobacter tengcongensis]
 gb|AAM24993.1| Mn-containing catalase [Thermoanaerobacter tengcongensis]
          Length = 190

 Score = 99.8 bits (247), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 63/77 (81%)

Query: 3   WTATYIQAKGDPLADLYEDIAAEEKARATYQWLIDMTDDVDLQDSLKFLREREIVHALRF 62
           W+A YIQAKGDP+ADL+ED+AAEEKAR+TY+ LI++TDD  ++D+L+FLREREIVH  RF
Sbjct: 114 WSAAYIQAKGDPIADLHEDMAAEEKARSTYEHLINLTDDPCVKDTLRFLREREIVHFQRF 173

Query: 63  KESVQIIIDEREQKRVF 79
            E++  I +  + KR F
Sbjct: 174 GETLVHIQEYLQSKRYF 190


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.321    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 105,903,291
Number of extensions: 3431470
Number of successful extensions: 9572
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 9572
Number of HSP's successfully gapped: 25
Length of query: 79
Length of database: 757,237,578
Length adjustment: 49
Effective length of query: 30
Effective length of database: 624,197,727
Effective search space: 18725931810
Effective search space used: 18725931810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)