BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0513.0007.p
         (98 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EAH76258.1| unknown [environmental sequence]                       105   3e-22
gb|EAH83653.1| unknown [environmental sequence]                       101   5e-21
ref|NP_987859.1| Asp/Glu racemase:Aspartate racemase [Methanococ...   100   2e-20
ref|ZP_00028802.1| COG1794: Aspartate racemase [Burkholderia fun...    97   2e-19
gb|EAI72442.1| unknown [environmental sequence]                        93   2e-18

>gb|EAH76258.1| unknown [environmental sequence]
          Length = 130

 Score =  105 bits (262), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 64/80 (80%)

Query: 5   IVPDDADRVVIHDIIYYELCLGIINEHSKKKYLEIMDRLIHKGAEAVILGCTEITMLISQ 64
           +VPD+  R ++H +IY ELCLG++N +S+ +Y +IM  L+ +GAEA+ILGCTEI +L+S 
Sbjct: 47  LVPDEEGRTLVHQVIYQELCLGVVNPNSRLQYQQIMADLVAQGAEAIILGCTEIGLLVSS 106

Query: 65  EDCNIPIYDTTRLHAEAAVD 84
           EDC++P++DTT LHA+ + D
Sbjct: 107 EDCSVPLFDTTALHAQKSAD 126


>gb|EAH83653.1| unknown [environmental sequence]
          Length = 120

 Score =  101 bits (252), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 61/80 (76%)

Query: 5   IVPDDADRVVIHDIIYYELCLGIINEHSKKKYLEIMDRLIHKGAEAVILGCTEITMLISQ 64
           +VPD+  R ++H +IY ELCLG++   S+ +Y +IM  L+ +GAEA+ILGCTEI +L+S 
Sbjct: 33  LVPDEESRALVHQVIYQELCLGVVKPDSRLQYQQIMADLVVQGAEAIILGCTEIALLVSA 92

Query: 65  EDCNIPIYDTTRLHAEAAVD 84
           EDC +P++DTT LHA+ A D
Sbjct: 93  EDCAVPLFDTTFLHAQKAAD 112


>ref|NP_987859.1| Asp/Glu racemase:Aspartate racemase [Methanococcus maripaludis S2]
 emb|CAF30295.1| Asp/Glu racemase:Aspartate racemase [Methanococcus maripaludis]
          Length = 234

 Score = 99.8 bits (247), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 63/80 (78%)

Query: 5   IVPDDADRVVIHDIIYYELCLGIINEHSKKKYLEIMDRLIHKGAEAVILGCTEITMLISQ 64
           I+P D +R V+H++IY EL  GII E S++KYL+I+D L+  GAE +ILGCTEI +LI Q
Sbjct: 147 IIPSDEERDVVHNVIYKELVSGIIKEESRQKYLKIIDNLVENGAEGIILGCTEIPLLIKQ 206

Query: 65  EDCNIPIYDTTRLHAEAAVD 84
           E C+  I+DT+++HAE+AV+
Sbjct: 207 EHCSTVIFDTSKIHAESAVE 226


>ref|ZP_00028802.1| COG1794: Aspartate racemase [Burkholderia fungorum]
          Length = 298

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/81 (53%), Positives = 61/81 (75%)

Query: 4   SIVPDDADRVVIHDIIYYELCLGIINEHSKKKYLEIMDRLIHKGAEAVILGCTEITMLIS 63
           ++VPD+A+R  +H IIY ELC G +N  S+  Y  +++ L  +GA+AVILGCTEIT+LI 
Sbjct: 212 TLVPDEAERADVHRIIYDELCHGKVNGASRAVYQRVIEALAARGAQAVILGCTEITLLIK 271

Query: 64  QEDCNIPIYDTTRLHAEAAVD 84
            ED  +P++DTT LHA+AAV+
Sbjct: 272 PEDSALPVFDTTALHAQAAVE 292


>gb|EAI72442.1| unknown [environmental sequence]
          Length = 230

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 61/80 (76%)

Query: 5   IVPDDADRVVIHDIIYYELCLGIINEHSKKKYLEIMDRLIHKGAEAVILGCTEITMLISQ 64
           +VPD++ R  +H IIY ELC GII+  S+  Y+ I++ L  +GA+AVILGCTEIT+LI  
Sbjct: 147 LVPDESGRDDVHRIIYDELCHGIISPESRATYVAIIEELARRGAQAVILGCTEITLLIGA 206

Query: 65  EDCNIPIYDTTRLHAEAAVD 84
           +D  +P++DTT LHA+AAV+
Sbjct: 207 DDSPLPVFDTTALHAKAAVE 226


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.325    0.143    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 139,367,288
Number of extensions: 4661383
Number of successful extensions: 15489
Number of sequences better than 1.0e-05: 53
Number of HSP's gapped: 15492
Number of HSP's successfully gapped: 53
Length of query: 98
Length of database: 757,237,578
Length adjustment: 66
Effective length of query: 32
Effective length of database: 578,041,044
Effective search space: 18497313408
Effective search space used: 18497313408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 120 (50.8 bits)