BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0513.0005.p (214 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00174757.1| hypothetical protein Cwat542301 [Crocosphaera... 106 4e-22 ref|ZP_00046156.1| COG0702: Predicted nucleoside-diphosphate-sug... 77 2e-13 ref|ZP_00057561.1| COG0702: Predicted nucleoside-diphosphate-sug... 77 4e-13 gb|EAA74666.1| hypothetical protein FG04806.1 [Gibberella zeae P... 74 2e-12 ref|NP_978876.1| conserved hypothetical protein [Bacillus cereus... 72 8e-12 >ref|ZP_00174757.1| hypothetical protein Cwat542301 [Crocosphaera watsonii WH 8501] Length = 209 Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 116/214 (54%), Gaps = 14/214 (6%) Query: 1 MNITIFGASGAIGQLLTRLALDHGDFVTAYVRNAQKISLKHPNLSLIQGELSNASTIEEA 60 M + +FGA+G +GQ + + AL+ G V A+ RN K+ +KHP L L QG++ +++ +E+A Sbjct: 1 MKLVVFGATGNVGQQVVKQALEQGHEVIAFARNPLKLQIKHPKLQLFQGDVMDSARVEQA 60 Query: 61 VAKSDVVISTLGPASDMSRKLKGTPIADGHELMIRAMKKLNKKRLITLATPALQSDDDKK 120 + D+V+ TLG +S K++ + G + +I AMKK KRLI T L + Sbjct: 61 LQGQDIVLCTLGSGKKLSGKVR----SQGTQNIIEAMKKCAMKRLICQTT--LGVGESWG 114 Query: 121 NISTILPGVMAKVFLPNGYAEMKKMEGIIKQSNLDWTVVRIINPNVKHKGQ-SYDYSLG- 178 +++ VM L +A+ + E +++ S LDWT++R P +G+ + Y G Sbjct: 115 SLNFYWKYVMFGFILRKVFADHQIQEDMVQNSGLDWTIIR---PAAFIEGELTGQYRHGF 171 Query: 179 ---DKSAKLSVSRENVAKIMYAATRDNQLIRKMP 209 DK++ L+++ +VA + D+ + + P Sbjct: 172 PGTDKTSTLTINHADVADFILKQLVDDFYLYQAP 205 >ref|ZP_00046156.1| COG0702: Predicted nucleoside-diphosphate-sugar epimerases [Lactobacillus gasseri] Length = 215 Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 110/225 (48%), Gaps = 24/225 (10%) Query: 1 MNITIFGASGAIGQLLTRLALDHGDFVTAYVRNAQKISLKHPNLSLIQGELSNASTIEEA 60 M + + GA+G G + + AL D + AYVRN K+++ P L++I+G+L + + + Sbjct: 1 MKLFLIGATGRTGSEIVKQALTRNDELVAYVRNPSKLNINDPELTVIKGQLDDVAKMASE 60 Query: 61 VAKSDVVISTLG-PASDMSRKLKGTPIADGHELMIRAMKKLNKKRLITLATPALQSDDDK 119 + + V+ TLG P S+ S KL I D +I+AM + KRLI+L+ AL Sbjct: 61 MKGCNAVLVTLGNPISNSSGKLFSFAIPD----IIKAMDQAKIKRLISLS--ALGVGTTL 114 Query: 120 KNISTILPGVM-AKVFLPNGYAEMKKMEGIIKQSNLDWTVV---------RIINPNVKHK 169 N S P M AK FL +++ + E +K S+L+WT V + NP V+ Sbjct: 115 ANTS--YPYRMGAKGFLKGNFSDHEAGESQLKNSDLNWTTVHPGPLFNGKKTENPLVRDA 172 Query: 170 GQSYDYSLGDKSAKLSVSRENVAKIMYAATRDNQLIRKMPIVYNK 214 Y ++ R +VA++M +D + K I+ +K Sbjct: 173 DSGYKMPGAPRTY-----RSDVAQVMLRIIKDRKTFGKQLIMCSK 212 >ref|ZP_00057561.1| COG0702: Predicted nucleoside-diphosphate-sugar epimerases [Thermobifida fusca] Length = 211 Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 7/162 (4%) Query: 1 MNITIFGASGAIGQLLTRLALDHGDFVTAYVRNAQKISLKHPNLSLIQGELSNASTIEEA 60 M + +FGA+G G L AL+ G VTA R+ +ISL+H L+ ++ ++++ + Sbjct: 1 MKLIVFGATGRTGTHLVHQALERGHQVTAVARDPSRISLEHEALTTVKADVTSVEALRPL 60 Query: 61 VAKSDVVISTLGPASDMSRKLKGTPIADGHELMIRAMKKLNKKR-LITLATPALQSDDDK 119 + D V+S LG R + +A ++ AMK+ +R L+ A P S + Sbjct: 61 LYGQDAVLSALG----ARRNREAGIVAQASRAVVSAMKESGTRRILVVSAAPVGPSPKGE 116 Query: 120 K-NISTILPGVMAKVFLPNGYAEMKKMEGIIKQSNLDWTVVR 160 K I +L ++ F P YA++ +ME + S LDWTVVR Sbjct: 117 KFAIRFLLTPLVRLAFAPQ-YADLAEMEEELAASGLDWTVVR 157 >gb|EAA74666.1| hypothetical protein FG04806.1 [Gibberella zeae PH-1] Length = 234 Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 8/165 (4%) Query: 3 ITIFGASGAIGQLLTRLALDHGDFVTAYVRNAQKIS---LKHPNLSLIQGELSNASTIEE 59 I +FGA+G G +L R L V AY R KI +P L +++G++S I Sbjct: 6 ILVFGATGPAGIVLLRELLHRKLPVLAYCRTPSKIPEDLSSNPLLEVVKGDMSQKDAISL 65 Query: 60 AVAKSDVVISTLGPASDMSRKLKGTPIADGHELMIRAMKKLNKKRLITLATPALQSDDDK 119 AV++S VIS LGP+S ++ T AD + ++ MK+ + R++ L T A+ D Sbjct: 66 AVSRSRAVISLLGPSS--AKPASNTEFADYYRTIVPLMKEHHVSRILALGTTAIYQPSDN 123 Query: 120 KNISTILPGVMAKVFLPNGYAEMKKMEGIIKQSN---LDWTVVRI 161 +++ L + KV + + Y M ++ + N +DWTV R+ Sbjct: 124 SSVTRALMSNLIKVMVNSAYQNMLAIQEYFETLNDTSIDWTVFRL 168 >ref|NP_978876.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS41484.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 211 Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 5/159 (3%) Query: 3 ITIFGASGAIGQLLTRLALDHGDFVTAYVRNAQKISLKHPNLSLIQGELSNASTIEEAVA 62 I I GA+G G+ L + ALD G V RN+ I + + N+ +I G+ + ++I + + Sbjct: 7 IAILGANGKAGKFLVKEALDKGYQVKILTRNSNNIKITNENIEIINGDARDFASIRKLLK 66 Query: 63 KSDVVISTLGPASDMSRKLKGTPIADGHELMIRAMKKLNKKRLITLATPALQSDDDKKNI 122 VI+ +G + S + ++ AMK+ KR I ++ +L D+K + Sbjct: 67 GCGAVINAVGQPKNESYIFSTVT-----KHILEAMKEFEIKRYIVISGGSLNVTGDQKGV 121 Query: 123 STILPGVMAKVFLPNGYAEMKKMEGIIKQSNLDWTVVRI 161 + ++ KVFL + K II+ S +DWT+VR+ Sbjct: 122 VNKIGAILFKVFLSKMMQDKYKELQIIQSSEVDWTIVRL 160 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.131 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 288,602,043 Number of extensions: 10897181 Number of successful extensions: 40991 Number of sequences better than 1.0e-05: 22 Number of HSP's gapped: 41081 Number of HSP's successfully gapped: 22 Length of query: 214 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 94 Effective length of database: 431,425,698 Effective search space: 40554015612 Effective search space used: 40554015612 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 123 (52.0 bits)