BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0512.0010.p (159 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00059727.1| hypothetical protein [Clostridium thermocellu... 275 3e-73 ref|ZP_00097190.1| hypothetical protein [Desulfitobacterium hafn... 263 1e-69 ref|NP_470079.1| lin0736 [Listeria innocua] >gi|25381173|pir||AH... 253 9e-67 ref|NP_464256.1| lmo0729 [Listeria monocytogenes EGD-e] >gi|2538... 250 7e-66 ref|ZP_00038025.1| hypothetical protein [Enterococcus faecium] 245 3e-64 >ref|ZP_00059727.1| hypothetical protein [Clostridium thermocellum ATCC 27405] Length = 159 Score = 275 bits (703), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 125/159 (78%), Positives = 144/159 (90%) Query: 1 MKIPTTLKHKPVVVSEDYEQVDGRYARNTDAKGLSLGLAQWNDRGKVDISAKVWRHTGEK 60 MKIPTTLKHKPV+V E+YE VDGRYA N+DAKGLSLGLAQWNDRGKVDISAKVWR+TGEK Sbjct: 1 MKIPTTLKHKPVIVCENYENVDGRYAYNSDAKGLSLGLAQWNDRGKVDISAKVWRYTGEK 60 Query: 61 WSRQSEELPMHRVLDLAILICSSSLYFQDAYRFPKMYDPENPVIDRIGLQGDAMSVSVCA 120 WSRQSEELP+HRVLDLAIL+C + L+FQDAYR+ K+Y+PE PVIDR+GLQGDAM+V++C Sbjct: 61 WSRQSEELPLHRVLDLAILVCRAKLHFQDAYRYEKLYNPEKPVIDRVGLQGDAMTVAICT 120 Query: 121 DNPMIDNDIKLFAQALSDDGEMIGERLRVLSRLLKDMGY 159 DN ID DIKLF Q LS+DGE+IGERLR LSR+LK+M Y Sbjct: 121 DNEKIDEDIKLFNQVLSEDGELIGERLRTLSRILKEMRY 159 >ref|ZP_00097190.1| hypothetical protein [Desulfitobacterium hafniense] Length = 165 Score = 263 bits (671), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 120/159 (75%), Positives = 140/159 (88%) Query: 1 MKIPTTLKHKPVVVSEDYEQVDGRYARNTDAKGLSLGLAQWNDRGKVDISAKVWRHTGEK 60 M IPT+LKHKPV+VSE+YE VDGRYA +DAKGLSLGLAQWNDRGKVDISAKVWR+TGEK Sbjct: 7 MNIPTSLKHKPVIVSENYENVDGRYAYQSDAKGLSLGLAQWNDRGKVDISAKVWRYTGEK 66 Query: 61 WSRQSEELPMHRVLDLAILICSSSLYFQDAYRFPKMYDPENPVIDRIGLQGDAMSVSVCA 120 WSRQSEELP+HRVLDLAIL+C + L+F++AYR+ YDPE PVIDRIGLQGDAM+V+VC Sbjct: 67 WSRQSEELPLHRVLDLAILVCRTKLHFREAYRYDNFYDPEKPVIDRIGLQGDAMTVAVCT 126 Query: 121 DNPMIDNDIKLFAQALSDDGEMIGERLRVLSRLLKDMGY 159 DN I+ DIKLF QAL +D E++GERLR LS +LK+MGY Sbjct: 127 DNEKINEDIKLFNQALCNDDELLGERLRTLSAILKEMGY 165 >ref|NP_470079.1| lin0736 [Listeria innocua] pir||AH1524 hypothetical protein lin0736 [imported] - Listeria innocua (strain Clip11262) emb|CAC95968.1| lin0736 [Listeria innocua] Length = 159 Score = 253 bits (646), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 113/159 (71%), Positives = 139/159 (87%) Query: 1 MKIPTTLKHKPVVVSEDYEQVDGRYARNTDAKGLSLGLAQWNDRGKVDISAKVWRHTGEK 60 MKIPTTLKHKPV+V+E+YE+VDG+ A ++DAKGLSLGLAQWNDRGKVDISAKVWRHTG+K Sbjct: 1 MKIPTTLKHKPVIVAENYEEVDGKSAYHSDAKGLSLGLAQWNDRGKVDISAKVWRHTGDK 60 Query: 61 WSRQSEELPMHRVLDLAILICSSSLYFQDAYRFPKMYDPENPVIDRIGLQGDAMSVSVCA 120 WSRQSEELP+HRVLDLAILI + ++F+DAYR P YD ENP +DRIGLQGDA++++VC Sbjct: 61 WSRQSEELPLHRVLDLAILIARTKVHFKDAYRLPNFYDKENPTLDRIGLQGDALTIAVCE 120 Query: 121 DNPMIDNDIKLFAQALSDDGEMIGERLRVLSRLLKDMGY 159 DN ID DI+LF QAL +D E++ ERL+ LS+LL++ GY Sbjct: 121 DNEYIDEDIQLFEQALKNDDELLSERLKTLSKLLQEAGY 159 >ref|NP_464256.1| lmo0729 [Listeria monocytogenes EGD-e] pir||AI1165 hypothetical protein lmo0729 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98807.1| lmo0729 [Listeria monocytogenes] Length = 159 Score = 250 bits (639), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 112/159 (70%), Positives = 138/159 (86%) Query: 1 MKIPTTLKHKPVVVSEDYEQVDGRYARNTDAKGLSLGLAQWNDRGKVDISAKVWRHTGEK 60 MKIPTTLKHKPV+V E+YE+VDG+ A ++DAKGLSLGLAQWNDRGKVDISAKVWRHTG+K Sbjct: 1 MKIPTTLKHKPVIVVENYEEVDGKNAYHSDAKGLSLGLAQWNDRGKVDISAKVWRHTGDK 60 Query: 61 WSRQSEELPMHRVLDLAILICSSSLYFQDAYRFPKMYDPENPVIDRIGLQGDAMSVSVCA 120 WSRQSEELP+HRVLDLAILI + ++F+DAYR P YD ENP +DRIGLQGDA++++VC Sbjct: 61 WSRQSEELPLHRVLDLAILIARTKVHFKDAYRLPHFYDKENPTLDRIGLQGDALTIAVCE 120 Query: 121 DNPMIDNDIKLFAQALSDDGEMIGERLRVLSRLLKDMGY 159 DN ID D++LF QAL +D E++ ERL+ LS+LL++ GY Sbjct: 121 DNEYIDEDMQLFEQALKNDDELLSERLKTLSKLLQEAGY 159 >ref|ZP_00038025.1| hypothetical protein [Enterococcus faecium] Length = 159 Score = 245 bits (625), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 115/159 (72%), Positives = 130/159 (81%) Query: 1 MKIPTTLKHKPVVVSEDYEQVDGRYARNTDAKGLSLGLAQWNDRGKVDISAKVWRHTGEK 60 M+IPT LKHKPV+V EDY++VDGR A NTDAKGLSLGLAQWNDRGKVDIS KVWRHTGEK Sbjct: 1 MEIPTNLKHKPVIVVEDYDKVDGRNALNTDAKGLSLGLAQWNDRGKVDISGKVWRHTGEK 60 Query: 61 WSRQSEELPMHRVLDLAILICSSSLYFQDAYRFPKMYDPENPVIDRIGLQGDAMSVSVCA 120 WSRQSEELP+ R+LDLAIL SLYFQDAYR+ K YDPENPV+D IGLQG+ M+V V Sbjct: 61 WSRQSEELPITRILDLAILAAQGSLYFQDAYRYEKFYDPENPVVDIIGLQGNRMTVEVDT 120 Query: 121 DNPMIDNDIKLFAQALSDDGEMIGERLRVLSRLLKDMGY 159 NP ID DI L+ L DGE+IGER R+L RLL ++GY Sbjct: 121 KNPKIDEDIILYYDTLQKDGELIGERFRILKRLLDELGY 159 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 246,375,419 Number of extensions: 9692868 Number of successful extensions: 20437 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 20437 Number of HSP's successfully gapped: 5 Length of query: 159 Length of database: 757,237,578 Length adjustment: 115 Effective length of query: 44 Effective length of database: 445,001,193 Effective search space: 19580052492 Effective search space used: 19580052492 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)