BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0512.0006.p
         (65 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_978995.1| thiJ/pfpI family protein [Bacillus cereus ATCC ...    97   1e-19
ref|NP_656534.1| ThiJ, ThiJ/PfpI family [Bacillus anthracis A201...    97   1e-19
ref|NP_389760.1| similar to hypothetical proteins from B. subtil...    93   2e-18
ref|NP_832426.1| ThiJ/PfpI family [Bacillus cereus ATCC 14579] >...    79   3e-14
ref|NP_469809.1| conserved hypothetical protein, similar to yoaZ...    55   5e-07

>ref|NP_978995.1| thiJ/pfpI family protein [Bacillus cereus ATCC 10987]
 gb|AAS41603.1| thiJ/pfpI family protein [Bacillus cereus ATCC 10987]
          Length = 210

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/54 (79%), Positives = 50/54 (92%)

Query: 1  MRTQKAYLYVLNTMSDWEYGYLIAELNTGRYFKTDAAPLKVVTVGVDKEIITTM 54
          M+T+KA+LYV NTMSDWEYGYLIAELN+GRYFK D APLKV+TVG +KE+ITTM
Sbjct: 1  MQTKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTM 54


>ref|NP_656534.1| ThiJ, ThiJ/PfpI family [Bacillus anthracis A2012]
 ref|NP_845018.1| thiJ/pfpI family protein [Bacillus anthracis str. Ames]
 gb|AAP26504.1| thiJ/pfpI family protein [Bacillus anthracis str. Ames]
          Length = 210

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/54 (79%), Positives = 50/54 (92%)

Query: 1  MRTQKAYLYVLNTMSDWEYGYLIAELNTGRYFKTDAAPLKVVTVGVDKEIITTM 54
          M+T+KA+LYV NTMSDWEYGYLIAELN+GRYFK D APLKV+TVG +KE+ITTM
Sbjct: 1  MQTKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTM 54


>ref|NP_389760.1| similar to hypothetical proteins from B. subtilis [Bacillus
          subtilis]
 pir||A69898 conserved hypothetical protein yoaZ - Bacillus subtilis
 gb|AAB84456.1| YoaZ [Bacillus subtilis]
 emb|CAB13771.1| yoaZ [Bacillus subtilis subsp. subtilis str. 168]
          Length = 210

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/54 (79%), Positives = 50/54 (92%)

Query: 1  MRTQKAYLYVLNTMSDWEYGYLIAELNTGRYFKTDAAPLKVVTVGVDKEIITTM 54
          M+T+K YLYV +TMSDWEYGYLIAELN+GRYFK DAA LKVVTVGV+KE+ITT+
Sbjct: 1  MQTRKVYLYVFHTMSDWEYGYLIAELNSGRYFKQDAASLKVVTVGVNKEMITTL 54


>ref|NP_832426.1| ThiJ/PfpI family [Bacillus cereus ATCC 14579]
 gb|AAP09627.1| ThiJ/PfpI family [Bacillus cereus ATCC 14579]
          Length = 202

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/44 (81%), Positives = 40/44 (90%)

Query: 11 LNTMSDWEYGYLIAELNTGRYFKTDAAPLKVVTVGVDKEIITTM 54
          L TMSDWEYGYLIAELN+GRYFK D APLKV+TVG +KE+ITTM
Sbjct: 3  LITMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTM 46


>ref|NP_469809.1| conserved hypothetical protein, similar to yoaZ B. subtilis
          [Listeria innocua]
 pir||AI1490 conserved hypothetical protein, yoaZ B. subtilis homolog lin0465
          [imported] - Listeria innocua (strain Clip11262)
 emb|CAC95697.1| lin0465 [Listeria innocua]
          Length = 212

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 35/48 (72%)

Query: 7  YLYVLNTMSDWEYGYLIAELNTGRYFKTDAAPLKVVTVGVDKEIITTM 54
          Y+YVL+T++DWE GY+ +ELN+ R+FK DA  + + TV   KE I TM
Sbjct: 5  YVYVLDTLADWEIGYVNSELNSRRFFKKDANRVSLKTVSYSKEPIKTM 52


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.320    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 80,182,008
Number of extensions: 2376131
Number of successful extensions: 4263
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4263
Number of HSP's successfully gapped: 5
Length of query: 65
Length of database: 757,237,578
Length adjustment: 36
Effective length of query: 29
Effective length of database: 659,494,014
Effective search space: 19125326406
Effective search space used: 19125326406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)