BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0512.0004.p (126 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_833596.1| hypothetical protein [Bacillus cereus ATCC 1457... 137 5e-32 ref|NP_980217.1| conserved hypothetical protein [Bacillus cereus... 132 3e-30 ref|NP_844411.1| conserved hypothetical protein [Bacillus anthra... 100 1e-20 ref|NP_655869.1| hypothetical protein predicted by GeneMark [Bac... 100 1e-20 ref|NP_831772.1| hypothetical protein [Bacillus cereus ATCC 1457... 95 6e-19 >ref|NP_833596.1| hypothetical protein [Bacillus cereus ATCC 14579] gb|AAP10797.1| hypothetical protein [Bacillus cereus ATCC 14579] Length = 174 Score = 137 bits (346), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 63/114 (55%), Positives = 81/114 (71%) Query: 3 GEQCYQGRILEYAYQVETFERRDLTEEELARWGAALNLGEEGREQIKGNELSYYMDQLDA 62 G Y +E+ YQ+ TFE R+ TE EL RW + LG+ GRE+IKGN + +Y++ L Sbjct: 53 GMLLYHMAAIEFYYQIHTFEDREPTEAELERWLPGIELGDLGREKIKGNAIEFYINTLQE 112 Query: 63 VRRTTLEWFQTVDDEWLYKEEPFWGDQPANYYFMWFHVFEDEINHRGQIRMIRK 116 VR T+E FQ++ DEWL+K FW D+PAN YF WFHVFEDEINHRGQIR+I+K Sbjct: 113 VRSKTIETFQSLPDEWLFKTTDFWYDKPANNYFKWFHVFEDEINHRGQIRLIKK 166 >ref|NP_980217.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS42825.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 174 Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 63/114 (55%), Positives = 78/114 (68%) Query: 3 GEQCYQGRILEYAYQVETFERRDLTEEELARWGAALNLGEEGREQIKGNELSYYMDQLDA 62 G Y +E+ YQ+ TFE R+ TE EL RW L L GRE+IKGN + +Y+D L Sbjct: 53 GMLLYHMAAVEFYYQIHTFEDREPTEAELERWLPGLELEALGREKIKGNSIEFYIDTLQE 112 Query: 63 VRRTTLEWFQTVDDEWLYKEEPFWGDQPANYYFMWFHVFEDEINHRGQIRMIRK 116 VR T+E FQ++ DEWL+K FW D+ AN YF WFHVFEDEINHRGQIR+I+K Sbjct: 113 VRSKTIETFQSLPDEWLFKTTDFWYDKQANNYFKWFHVFEDEINHRGQIRLIKK 166 >ref|NP_844411.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP25897.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 175 Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 50/107 (46%), Positives = 69/107 (64%), Gaps = 1/107 (0%) Query: 12 LEYAYQVETFERRDLTEEELARWGAALNLGEEGREQIKGNELSYYMDQLDAVRRTTLEWF 71 +E A+Q+ +FE RD T+EEL W AL LGE GR I+G+E+ YY+ L VR +L++ Sbjct: 64 IEKAHQLISFEERDFTKEELEIWEDALYLGESGR-TIRGHEIQYYVQLLQKVREESLKYL 122 Query: 72 QTVDDEWLYKEEPFWGDQPANYYFMWFHVFEDEINHRGQIRMIRKRC 118 DD WL E + N Y++WFHV EDEI+HRGQIRM++ + Sbjct: 123 SKQDDAWLMSERKWPNGVAHNQYYLWFHVLEDEISHRGQIRMMKNKL 169 >ref|NP_655869.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] Length = 153 Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 50/107 (46%), Positives = 69/107 (64%), Gaps = 1/107 (0%) Query: 12 LEYAYQVETFERRDLTEEELARWGAALNLGEEGREQIKGNELSYYMDQLDAVRRTTLEWF 71 +E A+Q+ +FE RD T+EEL W AL LGE GR I+G+E+ YY+ L VR +L++ Sbjct: 42 IEKAHQLISFEERDFTKEELEIWEDALYLGESGR-TIRGHEIQYYVQLLQKVREESLKYL 100 Query: 72 QTVDDEWLYKEEPFWGDQPANYYFMWFHVFEDEINHRGQIRMIRKRC 118 DD WL E + N Y++WFHV EDEI+HRGQIRM++ + Sbjct: 101 SKQDDAWLMSERKWPNGVAHNQYYLWFHVLEDEISHRGQIRMMKNKL 147 >ref|NP_831772.1| hypothetical protein [Bacillus cereus ATCC 14579] gb|AAP08973.1| hypothetical protein [Bacillus cereus ATCC 14579] Length = 175 Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 46/107 (42%), Positives = 70/107 (65%), Gaps = 1/107 (0%) Query: 12 LEYAYQVETFERRDLTEEELARWGAALNLGEEGREQIKGNELSYYMDQLDAVRRTTLEWF 71 +E +Q+ +F+ RD T+EEL W AL LGE GR I+G+E+ YY+ L +VR +L++ Sbjct: 64 IEKVHQLISFQNRDFTKEELEIWEDALYLGEAGR-AIRGHEIQYYVQLLQSVREESLKYL 122 Query: 72 QTVDDEWLYKEEPFWGDQPANYYFMWFHVFEDEINHRGQIRMIRKRC 118 DEWL E + N +++W+HV EDEI+HRGQIRM++++ Sbjct: 123 SEQSDEWLMSERKWPNGVIYNQHYLWYHVLEDEISHRGQIRMLKRKL 169 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.139 0.455 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 196,440,158 Number of extensions: 7637957 Number of successful extensions: 30537 Number of sequences better than 1.0e-05: 7 Number of HSP's gapped: 30533 Number of HSP's successfully gapped: 7 Length of query: 126 Length of database: 757,237,578 Length adjustment: 89 Effective length of query: 37 Effective length of database: 515,593,767 Effective search space: 19076969379 Effective search space used: 19076969379 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 120 (50.8 bits)