BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0512.0001.p (185 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_691200.1| hypothetical protein OB0279 [Oceanobacillus ihe... 258 3e-68 ref|NP_978032.1| isochorismatase family protein [Bacillus cereus... 256 2e-67 ref|NP_831372.1| Isochorismatase [Bacillus cereus ATCC 14579] >g... 244 5e-64 ref|NP_655497.1| Isochorismatase, Isochorismatase family [Bacill... 242 3e-63 gb|EAG56181.1| unknown [environmental sequence] 106 3e-22 >ref|NP_691200.1| hypothetical protein OB0279 [Oceanobacillus iheyensis HTE831] dbj|BAC12235.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 202 Score = 258 bits (660), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 120/185 (64%), Positives = 150/185 (81%) Query: 1 LNQVLLIIDAQQELMDGNQKESPVFHKDQLIQTINKVIEKAKQSGVETVFVRDLDVAGGK 60 + Q+LLIID QQ+L+DGN E PVF K++LI TIN VIEKA+ + VFVRDLDVAGG Sbjct: 18 IKQLLLIIDVQQDLVDGNDTEQPVFLKEELISTINDVIEKARNENMPVVFVRDLDVAGGS 77 Query: 61 DAGFQVHNEILMPADAKVFDKKATNAFHGTGLLHYLKEQQVEHVVIMGCKTQHCIDTAVR 120 GF VH I +P +A+ F+K ATNAF+GTGLL Y+K ++ H++IMGC+TQHCID+AVR Sbjct: 78 GEGFDVHRNIHVPENARFFNKSATNAFYGTGLLEYVKGEKFNHLIIMGCETQHCIDSAVR 137 Query: 121 TATVSHFDVTLVGDGHSTTDSDVLSADQIIRHHNSTLHGHYNVEHFSLVRMSEEELFRPT 180 TAT++ DVTLVGDGHST ++VLS +QIIRHHN+TLHGHYNV+HFS+VR S E+LF PT Sbjct: 138 TATINGMDVTLVGDGHSTKGNEVLSGEQIIRHHNTTLHGHYNVDHFSVVRNSNEDLFVPT 197 Query: 181 HDSYR 185 HD+YR Sbjct: 198 HDNYR 202 >ref|NP_978032.1| isochorismatase family protein [Bacillus cereus ATCC 10987] gb|AAS40640.1| isochorismatase family protein [Bacillus cereus ATCC 10987] Length = 186 Score = 256 bits (654), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 121/185 (65%), Positives = 148/185 (80%) Query: 1 LNQVLLIIDAQQELMDGNQKESPVFHKDQLIQTINKVIEKAKQSGVETVFVRDLDVAGGK 60 + Q LLIIDAQQELMDGN++ES VF K +L+ T+N ++KA S VFVRD+DVA G Sbjct: 1 MKQALLIIDAQQELMDGNEQESEVFRKTELLSTLNTAVQKAIDSNALIVFVRDIDVASGS 60 Query: 61 DAGFQVHNEILMPADAKVFDKKATNAFHGTGLLHYLKEQQVEHVVIMGCKTQHCIDTAVR 120 GF+VHN+I +P A + +K ATNAF+GT LL LKE+++ H+VI GCKT+HCIDTAVR Sbjct: 61 GVGFEVHNKIQVPQSAILINKAATNAFYGTSLLELLKEEKINHIVIGGCKTEHCIDTAVR 120 Query: 121 TATVSHFDVTLVGDGHSTTDSDVLSADQIIRHHNSTLHGHYNVEHFSLVRMSEEELFRPT 180 TATV FDVTL+ +GHSTTDSDVLSA+QII HHN TLHGHYNV+HFS+VR EE+LF+PT Sbjct: 121 TATVQGFDVTLIKNGHSTTDSDVLSAEQIIGHHNKTLHGHYNVDHFSMVRDIEEDLFQPT 180 Query: 181 HDSYR 185 HD YR Sbjct: 181 HDQYR 185 >ref|NP_831372.1| Isochorismatase [Bacillus cereus ATCC 14579] gb|AAP08573.1| Isochorismatase [Bacillus cereus ATCC 14579] Length = 186 Score = 244 bits (624), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 115/185 (62%), Positives = 145/185 (78%) Query: 1 LNQVLLIIDAQQELMDGNQKESPVFHKDQLIQTINKVIEKAKQSGVETVFVRDLDVAGGK 60 + Q LLIIDAQQEL+DGN++E+ VF K +L+ T+N ++KA S VFVRD+DVA G Sbjct: 1 MKQALLIIDAQQELIDGNEQENEVFRKTELLSTLNIALQKAIDSNALIVFVRDIDVASGS 60 Query: 61 DAGFQVHNEILMPADAKVFDKKATNAFHGTGLLHYLKEQQVEHVVIMGCKTQHCIDTAVR 120 GF+VHN+I +P A +K ATN+F+GT LL LKE+ + H+VI GCKT+HCIDTAVR Sbjct: 61 GEGFEVHNQIQVPQSAIFINKAATNSFYGTSLLELLKEENINHIVIGGCKTEHCIDTAVR 120 Query: 121 TATVSHFDVTLVGDGHSTTDSDVLSADQIIRHHNSTLHGHYNVEHFSLVRMSEEELFRPT 180 ATV FDVTL+ +GHSTTDS+VLSA+QII HHN TLHGHYN++HFS+VR EE+LF+PT Sbjct: 121 AATVQGFDVTLIKNGHSTTDSNVLSAEQIIGHHNKTLHGHYNLDHFSMVRDIEEDLFQPT 180 Query: 181 HDSYR 185 HD YR Sbjct: 181 HDQYR 185 >ref|NP_655497.1| Isochorismatase, Isochorismatase family [Bacillus anthracis A2012] ref|NP_844067.1| isochorismatase family protein [Bacillus anthracis str. Ames] gb|AAP25553.1| isochorismatase family protein [Bacillus anthracis str. Ames] Length = 186 Score = 242 bits (617), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 115/185 (62%), Positives = 142/185 (76%) Query: 1 LNQVLLIIDAQQELMDGNQKESPVFHKDQLIQTINKVIEKAKQSGVETVFVRDLDVAGGK 60 + Q LLIIDAQQELMDGN++E VF K L+ T+N ++KA + VFVRD+DVA G Sbjct: 1 MKQALLIIDAQQELMDGNEQEHEVFRKTDLLATLNTAVQKAIDANALIVFVRDIDVASGS 60 Query: 61 DAGFQVHNEILMPADAKVFDKKATNAFHGTGLLHYLKEQQVEHVVIMGCKTQHCIDTAVR 120 GF+VHN+I +P A + +K ATN+F+GT LL LKE+++ H+VI GCKT+HCIDTAVR Sbjct: 61 GEGFEVHNQIQVPQSAILINKAATNSFYGTSLLELLKEEKINHIVIGGCKTEHCIDTAVR 120 Query: 121 TATVSHFDVTLVGDGHSTTDSDVLSADQIIRHHNSTLHGHYNVEHFSLVRMSEEELFRPT 180 TATV FDVTL+ +GHSTTDS VLSA+QII HHN LHGHYNV+HFS+VR EE LF+P Sbjct: 121 TATVEGFDVTLIKNGHSTTDSTVLSAEQIIDHHNKILHGHYNVDHFSVVRDVEENLFQPI 180 Query: 181 HDSYR 185 HD YR Sbjct: 181 HDQYR 185 >gb|EAG56181.1| unknown [environmental sequence] Length = 163 Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 62/157 (39%), Positives = 90/157 (57%), Gaps = 7/157 (4%) Query: 5 LLIIDAQQELMDGNQKESPVFHKDQLIQTINKVIEKAKQSGVETVFVRDLDVAGGKDAG- 63 LLIID Q L+ G E+P QL+ IN++ + A +G+ + VR G A Sbjct: 9 LLIIDMQVGLLHG--PEAP-HAGPQLLANINRLADAAHSAGIPVLAVRHTGPTGSPIAAG 65 Query: 64 ---FQVHNEILMPADAKVFDKKATNAFHGTGLLHYLKEQQVEHVVIMGCKTQHCIDTAVR 120 +Q+ E+ + A VFDK+ +AFHGT L +LK++ V+ +++ G KTQ+CIDT R Sbjct: 66 SPLWQLVPELAVTAADLVFDKQRPSAFHGTALDSWLKQRGVQTLLVTGMKTQYCIDTTCR 125 Query: 121 TATVSHFDVTLVGDGHSTTDSDVLSADQIIRHHNSTL 157 A + V LV D H+ D+ L+A QII HHN+TL Sbjct: 126 AAADLGYSVVLVSDAHTCMDTQTLAATQIIAHHNTTL 162 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.133 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 263,038,729 Number of extensions: 10032633 Number of successful extensions: 26489 Number of sequences better than 1.0e-05: 62 Number of HSP's gapped: 26506 Number of HSP's successfully gapped: 62 Length of query: 185 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 67 Effective length of database: 436,855,896 Effective search space: 29269345032 Effective search space used: 29269345032 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 122 (51.6 bits)