BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0509.0005.p (179 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_714313.1| Appr-1''-p processing enzyme family protein [Le... 175 5e-43 gb|AAS71839.1| conserved hypothetical protein [Leptospira interr... 174 9e-43 gb|EAH31815.1| unknown [environmental sequence] 170 1e-41 ref|ZP_00117802.1| COG2110: Predicted phosphatase homologous to ... 169 3e-41 ref|NP_706956.1| putative polyprotein [Shigella flexneri 2a str.... 167 9e-41 >ref|NP_714313.1| Appr-1''-p processing enzyme family protein [Leptospira interrogans serovar lai str. 56601] gb|AAN51331.1| Appr-1''-p processing enzyme family protein [Leptospira interrogans serovar lai str. 56601] Length = 175 Score = 175 bits (443), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 85/175 (48%), Positives = 115/175 (65%), Gaps = 4/175 (2%) Query: 3 ISACQGDITSWQGDMIVNASNSGLFGGGGVDGAIHRAGGPQIAEECAAIRRKQGGILPGE 62 I + DIT + D IVNA+NS L GGGGVDGAIHRAGGP+I EEC IR KQG GE Sbjct: 5 IKLIKEDITQLEVDAIVNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREKQGECKVGE 64 Query: 63 AAVTCAGKLPLLGIIHTVGPIWKGGGAGEIATLARCYLNSLDAACTQGARSIAFPNISTG 122 A +T AG+L IIHTVGPIW GG E L+ Y NSL A ++IAFPNISTG Sbjct: 65 AVITTAGRLNAKFIIHTVGPIWSGGNKNEDELLSNAYKNSLLLAKNHSLKTIAFPNISTG 124 Query: 123 VYNFPKALACQTALKTVVDYVKERGPGGHPLERIEFICFEKDNADLYEETLKRYS 177 +Y+FPK A + A+++V +++K+ + ++ + F+CF+ +N ++Y + L+ Y Sbjct: 125 IYHFPKERAAKIAIQSVTEFLKQ----DNQIQTVFFVCFDFENLEIYNKLLQTYK 175 >gb|AAS71839.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 175 Score = 174 bits (440), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 85/175 (48%), Positives = 114/175 (65%), Gaps = 4/175 (2%) Query: 3 ISACQGDITSWQGDMIVNASNSGLFGGGGVDGAIHRAGGPQIAEECAAIRRKQGGILPGE 62 I + DIT + D IVNA+NS L GGGGVDGAIHRAGGP+I EEC IR KQG GE Sbjct: 5 IKLIKEDITQLEVDAIVNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREKQGECKVGE 64 Query: 63 AAVTCAGKLPLLGIIHTVGPIWKGGGAGEIATLARCYLNSLDAACTQGARSIAFPNISTG 122 A +T AG+L IIHTVGPIW GG E L+ Y NSL A ++IAFPNISTG Sbjct: 65 AVITTAGRLNAKFIIHTVGPIWSGGNKNEDELLSNAYKNSLLLAKNHSLKTIAFPNISTG 124 Query: 123 VYNFPKALACQTALKTVVDYVKERGPGGHPLERIEFICFEKDNADLYEETLKRYS 177 +Y+FPK A + A+++V ++K+ + ++ + F+CF+ +N ++Y + L+ Y Sbjct: 125 IYHFPKERAAKIAIQSVTKFLKQ----DNQIQTVFFVCFDFENLEIYNKLLQTYK 175 >gb|EAH31815.1| unknown [environmental sequence] Length = 169 Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 84/173 (48%), Positives = 109/173 (63%), Gaps = 6/173 (3%) Query: 3 ISACQGDITSWQGDMIVNASNSGLFGGGGVDGAIHRAGGPQIAEECAAIRRKQGGILPGE 62 I +GDIT + D IVNA+NS L GGGGVDGAIHRAGG +I +EC IR +QG GE Sbjct: 3 IELIKGDITKIEADAIVNAANSSLLGGGGVDGAIHRAGGKKILDECLEIRNRQGKCRTGE 62 Query: 63 AAVTCAGKLPLLGIIHTVGPIWKGGGAGEIATLARCYLNSLDAACTQGARSIAFPNISTG 122 A VT G LP +IHTVGP+W G LA CY+NSL A + ++IAFPNISTG Sbjct: 63 AVVTTGGNLPAKYVIHTVGPVWNGDEEKGSKLLANCYINSLKLAESLDVKTIAFPNISTG 122 Query: 123 VYNFPKALACQTALKTVVDYVKERGPGGHPLERIEFICFEKDNADLYEETLKR 175 +Y FPK LA + A+ V ++ E +E++ F+CF+ +N ++Y LK Sbjct: 123 IYRFPKELAAKIAIDEVRNFTSE------IIEKVIFVCFDDENEEIYRTLLKE 169 >ref|ZP_00117802.1| COG2110: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [Cytophaga hutchinsonii] Length = 177 Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 84/175 (48%), Positives = 110/175 (62%), Gaps = 4/175 (2%) Query: 3 ISACQGDITSWQGDMIVNASNSGLFGGGGVDGAIHRAGGPQIAEECAAIRRKQGGILPGE 62 I +GDIT+ + D IVNA+N+ L GGGGVDGAIHRAGG +I E+C I +QG GE Sbjct: 2 IEVIKGDITTVEVDAIVNAANTSLLGGGGVDGAIHRAGGKEILEDCRKIIARQGSCKTGE 61 Query: 63 AAVTCAGKLPLLGIIHTVGPIWKGGGAGEIATLARCYLNSLDAACTQGARSIAFPNISTG 122 A +T AGKLP +IHTVGP+W GG E LA CY N+L A SIAFP ISTG Sbjct: 62 AVITTAGKLPAKFVIHTVGPVWNGGNKNESDKLADCYFNALKLAVENDCVSIAFPGISTG 121 Query: 123 VYNFPKALACQTALKTVVDYVKERGPGGHPLERIEFICFEKDNADLYEETLKRYS 177 +Y FPK +A A+KT VD++ G ++++ F+CF+ + L + L Y+ Sbjct: 122 IYRFPKTMAAHIAVKTTVDFL----AGTDKIKQVLFVCFDDEYEMLIKTELDLYN 172 >ref|NP_706956.1| putative polyprotein [Shigella flexneri 2a str. 301] ref|NP_836741.1| putative polyprotein [Shigella flexneri 2a str. 2457T] gb|AAN42663.1| putative polyprotein [Shigella flexneri 2a str. 301] gb|AAP16547.1| putative polyprotein [Shigella flexneri 2a str. 2457T] Length = 177 Score = 167 bits (423), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 82/177 (46%), Positives = 111/177 (62%), Gaps = 6/177 (3%) Query: 3 ISACQGDITSWQGDMIVNASNSGLFGGGGVDGAIHRAGGPQIAEECAAIRRKQGGILPGE 62 I QGDIT D+IVNA+N L GGGGVDGAIHRA GP + + C +R++QG G Sbjct: 5 IHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGH 64 Query: 63 AAVTCAGKLPLLGIIHTVGPIWKGGGAGEIATLARCYLNSLDAACTQGARSIAFPNISTG 122 A +T AG LP ++HTVGP+W+GG E L YLNSL S+AFP ISTG Sbjct: 65 AVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTG 124 Query: 123 VYNFPKALACQTALKTVVDYVKERGPGGHPL-ERIEFICFEKDNADLYEETLKRYSD 178 VY++P+A A + A+KTV +++ H L E++ F+C++++NA LYE L + D Sbjct: 125 VYSYPRAAAAEIAVKTVSEFITR-----HALPEQVYFVCYDEENAHLYERLLTQQGD 176 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.139 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 296,672,411 Number of extensions: 12652449 Number of successful extensions: 28125 Number of sequences better than 1.0e-05: 170 Number of HSP's gapped: 27963 Number of HSP's successfully gapped: 176 Length of query: 179 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 61 Effective length of database: 436,855,896 Effective search space: 26648209656 Effective search space used: 26648209656 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 122 (51.6 bits)