BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0040.p (172 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_403991.1| 4Fe-4S ferrodoxin [Yersinia pestis] >gi|2212451... 114 8e-25 ref|NP_289262.1| involved in electron transport from formate to ... 111 7e-24 ref|NP_457237.1| electron transport protein [Salmonella enterica... 110 1e-23 ref|NP_755148.1| Electron transport protein hydN [Escherichia co... 110 2e-23 ref|NP_311596.1| HydN [Escherichia coli O157:H7] >gi|16130620|re... 110 2e-23 >ref|NP_403991.1| 4Fe-4S ferrodoxin [Yersinia pestis] ref|NP_667937.1| electron transport protein [Yersinia pestis KIM] ref|NP_991890.1| 4Fe-4S ferrodoxin [Yersinia pestis biovar Mediaevails str. 91001] pir||AG0042 4Fe-4S ferrodoxin [imported] - Yersinia pestis (strain CO92) emb|CAC89202.1| 4Fe-4S ferrodoxin [Yersinia pestis CO92] gb|AAM84188.1| electron transport protein [Yersinia pestis KIM] gb|AAS60767.1| 4Fe-4S ferrodoxin [Yersinia pestis biovar Mediaevails str. 91001] Length = 185 Score = 114 bits (285), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 64/149 (42%), Positives = 85/149 (57%), Gaps = 14/149 (9%) Query: 1 VSAHSTENMF--LQQEENPDFYPRLRVTETDQVTAPVQCRQCEDAPCANVCPXXXXXXXX 58 V AHS +N L E+ F+PRL V ++ V+ P+ C QCEDAPC N CP Sbjct: 23 VVAHSADNKVSTLMPEQ---FHPRLSVMKSFAVSTPILCHQCEDAPCENACPNGAIITGS 79 Query: 59 XXXXXXQDTCIGCKTCMLVCPFGAIAMVPEFRGGQKQV--QPGLRSNANGVWARKERLVA 116 CIGCKTCMLVCPFGA++++ GQ+ QP + S + R A Sbjct: 80 HGVQLLASRCIGCKTCMLVCPFGAMSIIERPADGQQAADSQPVMASGSG-------RAQA 132 Query: 117 SKCDLCEESGNGPACVQICPTHALQLVVP 145 KCDLC + +GPAC+++CPT+AL+LV P Sbjct: 133 HKCDLCHQRESGPACIEVCPTNALKLVTP 161 >ref|NP_289262.1| involved in electron transport from formate to hydrogen, Fe-S centers [Escherichia coli O157:H7 EDL933] pir||H85919 hypothetical protein hydN [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gb|AAG57820.1| involved in electron transport from formate to hydrogen, Fe-S centers [Escherichia coli O157:H7 EDL933] Length = 175 Score = 111 bits (277), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 60/159 (37%), Positives = 86/159 (54%), Gaps = 17/159 (10%) Query: 10 FLQQEENPD--------FYPRLRVTETDQVTAPVQCRQCEDAPCANVCPXXXXXXXXXXX 61 + +EN D F PR+ V + ++ CRQCEDAPCANVCP Sbjct: 23 VVSHQENQDCASLTPETFLPRIHVIKGVNISTATVCRQCEDAPCANVCPNGAISRDKGFV 82 Query: 62 XXXQDTCIGCKTCMLVCPFGAIAMVPEFRGGQKQVQPGLRSNANGVWARKERLVASKCDL 121 Q+ CIGCKTC++ CP+GA+ +V V+P +R++ G+ R ++ A+KCDL Sbjct: 83 HVMQERCIGCKTCVVACPYGAMEVV---------VRPVIRNSGAGLNVRADKAEANKCDL 133 Query: 122 CEESGNGPACVQICPTHALQLVVPDDVSMDTAAKRAASA 160 C +GPAC+ CPTHAL V + + +A KR +A Sbjct: 134 CNHREBGPACMAACPTHALICVDRNKLEQLSAEKRRRTA 172 >ref|NP_457237.1| electron transport protein [Salmonella enterica subsp. enterica serovar Typhi] ref|NP_461764.1| electron transport protein [Salmonella typhimurium LT2] ref|NP_806446.1| electron transport protein [Salmonella enterica subsp. enterica serovar Typhi Ty2] pir||AG0845 electron transport protein hydN [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gb|AAL21723.1| electron transport protein (FeS center) from formate to hydrogen [Salmonella typhimurium LT2] emb|CAD05950.1| electron transport protein [Salmonella enterica subsp. enterica serovar Typhi] gb|AAO70306.1| electron transport protein [Salmonella enterica subsp. enterica serovar Typhi Ty2] Length = 181 Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 85/159 (53%), Gaps = 17/159 (10%) Query: 10 FLQQEENPD--------FYPRLRVTETDQVTAPVQCRQCEDAPCANVCPXXXXXXXXXXX 61 + +EN D F PR+ V + V+ CRQCEDAPCANVCP Sbjct: 23 VVSHQENQDCASLTPETFLPRIHVIKGVNVSTATLCRQCEDAPCANVCPNGAISRDKGFV 82 Query: 62 XXXQDTCIGCKTCMLVCPFGAIAMVPEFRGGQKQVQPGLRSNANGVWARKERLVASKCDL 121 Q+ CIGCKTC++ CP+GA+ +V V+P +R++ G+ R E+ A+KCDL Sbjct: 83 HVMQERCIGCKTCVVACPYGAMEVV---------VRPVVRNSGAGLNVRAEKAEANKCDL 133 Query: 122 CEESGNGPACVQICPTHALQLVVPDDVSMDTAAKRAASA 160 C GPAC+ CPTHAL V + + +A KR +A Sbjct: 134 CHHREAGPACMAACPTHALICVDRNKLEQLSAEKRRRAA 172 >ref|NP_755148.1| Electron transport protein hydN [Escherichia coli CFT073] gb|AAN81718.1| Electron transport protein hydN [Escherichia coli CFT073] Length = 180 Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/159 (37%), Positives = 86/159 (54%), Gaps = 17/159 (10%) Query: 10 FLQQEENPD--------FYPRLRVTETDQVTAPVQCRQCEDAPCANVCPXXXXXXXXXXX 61 + +EN D F PR+ V + ++ CRQCEDAPCANVCP Sbjct: 28 VVSHQENQDCASLTPETFLPRIHVIKGVNISTATVCRQCEDAPCANVCPNGAISRDKGFV 87 Query: 62 XXXQDTCIGCKTCMLVCPFGAIAMVPEFRGGQKQVQPGLRSNANGVWARKERLVASKCDL 121 Q+ CIGCKTC++ CP+GA+ +V V+P +R++ G+ R ++ A+KCDL Sbjct: 88 HVMQERCIGCKTCVVACPYGAMEVV---------VRPVIRNSGAGLNVRADKAEANKCDL 138 Query: 122 CEESGNGPACVQICPTHALQLVVPDDVSMDTAAKRAASA 160 C +GPAC+ CPTHAL V + + +A KR +A Sbjct: 139 CNHREDGPACMAACPTHALICVDRNKLEQLSAEKRRRTA 177 >ref|NP_311596.1| HydN [Escherichia coli O157:H7] ref|NP_417193.1| HydN [Escherichia coli K12] sp|P30132|HYDN_ECOLI Electron transport protein hydN pir||E65051 4Fe-4S iron-sulfur protein - Escherichia coli (strain K-12) pir||A91075 electron transport protein HydN ECs3569 [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) dbj|BAA03314.1| 4Fe-4S iron-sulfer protein, putative [Escherichia coli] gb|AAA69223.1| 4Fe-4S iron-sulfur protein gb|AAC75755.1| involved in electron transport from formate to hydrogen, Fe-S centers [Escherichia coli K12] dbj|BAB36992.1| electron transport protein HydN [Escherichia coli O157:H7] Length = 175 Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/159 (37%), Positives = 86/159 (54%), Gaps = 17/159 (10%) Query: 10 FLQQEENPD--------FYPRLRVTETDQVTAPVQCRQCEDAPCANVCPXXXXXXXXXXX 61 + +EN D F PR+ V + ++ CRQCEDAPCANVCP Sbjct: 23 VVSHQENQDCASLTPETFLPRIHVIKGVNISTATVCRQCEDAPCANVCPNGAISRDKGFV 82 Query: 62 XXXQDTCIGCKTCMLVCPFGAIAMVPEFRGGQKQVQPGLRSNANGVWARKERLVASKCDL 121 Q+ CIGCKTC++ CP+GA+ +V V+P +R++ G+ R ++ A+KCDL Sbjct: 83 HVMQERCIGCKTCVVACPYGAMEVV---------VRPVIRNSGAGLNVRADKAEANKCDL 133 Query: 122 CEESGNGPACVQICPTHALQLVVPDDVSMDTAAKRAASA 160 C +GPAC+ CPTHAL V + + +A KR +A Sbjct: 134 CNHREDGPACMAACPTHALICVDRNKLEQLSAEKRRRTA 172 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.133 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 222,466,552 Number of extensions: 7420433 Number of successful extensions: 22442 Number of sequences better than 1.0e-05: 215 Number of HSP's gapped: 22334 Number of HSP's successfully gapped: 215 Length of query: 172 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 55 Effective length of database: 439,570,995 Effective search space: 24176404725 Effective search space used: 24176404725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 121 (51.2 bits)