BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0037.p (651 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00014222.1| COG0243: Anaerobic dehydrogenases, typically ... 910 0.0 ref|NP_403992.1| formate dehydrogenase H [Yersinia pestis] >gi|2... 876 0.0 sp|P07658|FDHF_ECOLI Formate dehydrogenase H (Formate-hydrogen-l... 811 0.0 gb|AAC43173.1| formate dehydrogenase-H alpha subunit 809 0.0 ref|NP_756934.1| Formate dehydrogenase H [Escherichia coli CFT07... 808 0.0 >ref|ZP_00014222.1| COG0243: Anaerobic dehydrogenases, typically selenocysteine-containing [Rhodospirillum rubrum] Length = 713 Score = 910 bits (2352), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/642 (66%), Positives = 512/642 (79%), Gaps = 5/642 (0%) Query: 4 KEGVLQEVSWEEAIGFTAEKLNAIKEKYGPDAIMGTGSARGPGNEANYVMQKFMRAVIGT 63 ++ +EVSW EAI F A +L IK KYGPD+IM TGSARGPGNEANYVMQKF RAV+GT Sbjct: 71 RDSAFEEVSWYEAINFAATRLQEIKHKYGPDSIMLTGSARGPGNEANYVMQKFARAVVGT 130 Query: 64 NNIDHCARVCHGPSVAGLTYSLGDGAMSNSIPEIENTDLLLIFGYNAAVTHPIVARRIVK 123 NNIDHCARVCHGPSVAGL +LG+GAMSNS+ EIENT + +FGYNAAV+HPIVARRI+K Sbjct: 131 NNIDHCARVCHGPSVAGLQVTLGNGAMSNSVEEIENTKCVFVFGYNAAVSHPIVARRILK 190 Query: 124 AKQKGAVLIVADPRKTESARIADTWLPLKGGTNMALVNAFGHVLIEEELYDKDYVSNFVQ 183 AK+KGA +IV DPR E+ARIAD WLPLK GTNMALVNAF HVL+EE LYDKD+V+ + + Sbjct: 191 AKEKGAKIIVCDPRFIETARIADLWLPLKNGTNMALVNAFAHVLLEENLYDKDFVAKYTE 250 Query: 184 GFDEYKANVEKYTPEYAERITGVRAADIRKVMRQYAKSGKAMILYGMGXXXXCQFAQAVD 243 G D+YKA V KYTPEYAE+ITGV A IR+ MR YA + A +++GMG Q++QAVD Sbjct: 251 GLDDYKATVAKYTPEYAEKITGVPAQQIREAMRMYAGAETATVMWGMGVT---QWSQAVD 307 Query: 244 VVKGLASLALLTGHFGRESVGIGPVRGQNNVQGSCDMGALPNVYPGYQSVEDAKIRKKFE 303 VVKGL+ LALLTG+ G+ S G+ PVRGQNNVQG+CD GALPN+ PGYQ V DA R KFE Sbjct: 308 VVKGLSGLALLTGNLGKPSCGVAPVRGQNNVQGACDHGALPNMLPGYQPVTDAAARAKFE 367 Query: 304 KAWGTS-LPDKTGYRLTEVPHLILKENKIKAYYIFGEDPVQSDPNAAELREALDQLELVI 362 KAWG S LPDK G LTEVP ++ K K+KAYYIFGEDP Q+DP+ E+RE++ LE VI Sbjct: 368 KAWGVSNLPDKPGVCLTEVPKMV-KAGKLKAYYIFGEDPAQTDPDLHEVRESMRDLEFVI 426 Query: 363 VQDIFMNKTALHADVILPATSWGEHDGVYSSADRGFQRIRKAIDPPGDVKPDWQIISEVS 422 Q+IFM KTA+ ADV+ PATSWGEH+GVYSS DRGFQR KAI+P GDVKPDW+IIS ++ Sbjct: 427 CQEIFMTKTAMMADVVFPATSWGEHEGVYSSCDRGFQRFYKAIEPQGDVKPDWEIISLMA 486 Query: 423 TAMGYPMAYKNSEEIWDEMRKLCPSFAGASYSKMEALGGVQWPCPSEDHPGTPYLYQGNR 482 TAMGYPM Y N++EIWDE+R+LCP + GA+Y KM LG +QWPCP DHPGTPYLY + Sbjct: 487 TAMGYPMKYSNTQEIWDELRELCPIYYGATYEKMAGLGYIQWPCPDLDHPGTPYLYADKK 546 Query: 483 FTTPSGKGQLFACEWRAPLEQPDAEYPLTLSTVREVGHYSVRTMTGNCRALSQLSDEPGN 542 F TPSGKG LFACEWR P+E+ DA YPL LSTVREVGHYS RTMTGNC AL L+DEPG Sbjct: 547 FQTPSGKGLLFACEWRPPMEKVDAAYPLILSTVREVGHYSCRTMTGNCHALQTLADEPGY 606 Query: 543 IQISLEDAAEHGIADGQLVQVYSRRGHIMARAQVSGRIKKGATYMTYHFWIGACNELTVD 602 I + +DA GI+D LV + SRRG I+ARA + RI +GA YMTY +W+GACNELT + Sbjct: 607 ISMHSKDAKALGISDQHLVSISSRRGKIIARADIDDRINEGAVYMTYQWWVGACNELTAE 666 Query: 603 YLDPVSKTPEFKYCAVRIEAISDQAQAEALVRKQYAELRKQM 644 +LDP+SKTPE+KY AV++EAI+DQA AE V++ Y++L+ + Sbjct: 667 HLDPISKTPEYKYSAVKVEAIADQAWAENHVQEVYSQLKADL 708 >ref|NP_403992.1| formate dehydrogenase H [Yersinia pestis] ref|NP_667938.1| selenopolypeptide subunit of formate dehydrogenase H [Yersinia pestis KIM] ref|NP_991891.1| formate dehydrogenase H [Yersinia pestis biovar Mediaevails str. 91001] pir||AH0042 formate dehydrogenase (EC 1.2.1.2) [imported] - Yersinia pestis (strain CO92) emb|CAC89203.1| formate dehydrogenase H [Yersinia pestis CO92] gb|AAM84189.1| selenopolypeptide subunit of formate dehydrogenase H [Yersinia pestis KIM] gb|AAS60768.1| formate dehydrogenase H [Yersinia pestis biovar Mediaevails str. 91001] Length = 715 Score = 876 bits (2264), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/649 (64%), Positives = 508/649 (78%), Gaps = 6/649 (0%) Query: 3 RKEG-VLQEVSWEEAIGFTAEKLNAIKEKYGPDAIMGTGSARGPGNEANYVMQKFMRAVI 61 R+ G Q VSWE AI F KL+AIKE++GPDAIM TGS+RGPGNEANYVMQKF RA I Sbjct: 69 RQRGEAFQPVSWEAAIAFITAKLSAIKERHGPDAIMMTGSSRGPGNEANYVMQKFARAAI 128 Query: 62 GTNNIDHCARVCHGPSVAGLTYSLGDGAMSNSIPEIENTDLLLIFGYNAAVTHPIVARRI 121 GTNNID CAR+CHGPSVAGL +LG+GAMSNSI EIENTD +L+FGYNAA +HPIVARRI Sbjct: 129 GTNNIDCCARLCHGPSVAGLQQTLGNGAMSNSIGEIENTDCILVFGYNAADSHPIVARRI 188 Query: 122 VKAKQKGAVLIVADPRKTESARIADTWLPLKGGTNMALVNAFGHVLIEEELYDKDYVSNF 181 +KAK KGA LIV DPR E+ARIAD WLPLK G NMALVNAF HVLIEE+LYD +YV + Sbjct: 189 LKAKNKGAKLIVCDPRHIETARIADQWLPLKNGANMALVNAFIHVLIEEKLYDANYVRDH 248 Query: 182 VQGFDEYKANVEKYTPEYAERITGVRAADIRKVMRQYAKSGKAMILYGMGXXXXCQFAQA 241 +GFDE KA V Y PE E ITG+ A +R+ MR YA + A +L+GMG Q+ QA Sbjct: 249 TRGFDELKAGVAAYRPEDVEPITGLSAKAVRQAMRTYAAAPAATLLWGMGVT---QWGQA 305 Query: 242 VDVVKGLASLALLTGHFGRESVGIGPVRGQNNVQGSCDMGALPNVYPGYQSVEDAKIRKK 301 VDVVKGL+SLALLTG+ GR +VG+GPVRGQNNVQG+CDMG LPN +PGY+ V D++ R + Sbjct: 306 VDVVKGLSSLALLTGNLGRPNVGVGPVRGQNNVQGACDMGVLPNTFPGYEKVTDSEARAR 365 Query: 302 FEKAWGTS-LPDKTGYRLTEVPHLILKENKIKAYYIFGEDPVQSDPNAAELREALDQLEL 360 F AWG + LP GY +T+VPH + E K+KAYY+FGEDP+Q++P+ A +R A L+L Sbjct: 366 FAHAWGVAELPAHVGYSITDVPHKV-AEGKLKAYYVFGEDPIQTEPDLAAMRAAFAALDL 424 Query: 361 VIVQDIFMNKTALHADVILPATSWGEHDGVYSSADRGFQRIRKAIDPPGDVKPDWQIISE 420 V+VQDIFM KTA ADV+LPATSWGEH+GVY+SADRGFQ KAI+P GDVKPDW+IIS Sbjct: 425 VVVQDIFMTKTAELADVVLPATSWGEHEGVYTSADRGFQHFNKAIEPKGDVKPDWEIISL 484 Query: 421 VSTAMGYPMAYKNSEEIWDEMRKLCPSFAGASYSKMEALGGVQWPCPSEDHPGTPYLYQG 480 +STAMGYPMAY+N+++IWDEMR LCP FAG +Y K+ LG VQWPCP+EDHPGTPYLY Sbjct: 485 ISTAMGYPMAYQNTQQIWDEMRGLCPPFAGVTYEKLAGLGYVQWPCPTEDHPGTPYLYTD 544 Query: 481 NRFTTPSGKGQLFACEWRAPLEQPDAEYPLTLSTVREVGHYSVRTMTGNCRALSQLSDEP 540 N+F T GKG L W+ P EQ D++YPL L TVREVGHYS R+MTGNC L L+DEP Sbjct: 545 NQFATADGKGLLSCAPWQPPHEQTDSDYPLALCTVREVGHYSCRSMTGNCGTLKILADEP 604 Query: 541 GNIQISLEDAAEHGIADGQLVQVYSRRGHIMARAQVSGRIKKGATYMTYHFWIGACNELT 600 G +QI EDA+ G+ D L+ + SRRG ++ARA V+ R +GA YMTY +WIGACNELT Sbjct: 605 GYVQIHPEDASYLGVIDQALIWISSRRGKVIARASVTERANRGAVYMTYQWWIGACNELT 664 Query: 601 VDYLDPVSKTPEFKYCAVRIEAISDQAQAEALVRKQYAELRKQMLVGAV 649 VD++DPVSKTPEFK+CAV++EAISDQ AE V +QY++L+K++ AV Sbjct: 665 VDHVDPVSKTPEFKHCAVKVEAISDQTAAEQYVEQQYSQLKKRLSDAAV 713 >sp|P07658|FDHF_ECOLI Formate dehydrogenase H (Formate-hydrogen-lyase-linked, selenocysteine-containing polypeptide) (Formate dehydrogenase-H alpha subunit) (FDH-H) pir||DEECFS formate dehydrogenase (EC 1.2.1.2) H (hydrogenase-linked) [validated] - Escherichia coli (strain K-12) Length = 715 Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/654 (59%), Positives = 495/654 (75%), Gaps = 10/654 (1%) Query: 1 MIRKE--GVLQEVSWEEAIGFTAEKLNAIKEKYGPDAIMGTGSARGPGNEANYVMQKFMR 58 MIR++ G L+ VSW+EA+ + AE+L+AIKEKYGPDAI TGS+RG GNE NYVMQKF R Sbjct: 66 MIRRQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFAR 125 Query: 59 AVIGTNNIDHCARVCHGPSVAGLTYSLGDGAMSNSIPEIENTDLLLIFGYNAAVTHPIVA 118 AVIGTNN+D CARVCHGPSVAGL S+G+GAMSN+I EI+NTDL+ +FGYN A +HPIVA Sbjct: 126 AVIGTNNVDCCARVCHGPSVAGLHQSVGNGAMSNAINEIDNTDLVFVFGYNPADSHPIVA 185 Query: 119 RRIVKAKQKGAVLIVADPRKTESARIADTWLPLKGGTNMALVNAFGHVLIEEELYDKDYV 178 ++ AK+ GA +IV DPRK E+ARIAD + LK G+N+AL+NA GHV+IEE LYDK +V Sbjct: 186 NHVINAKRNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAMGHVIIEENLYDKAFV 245 Query: 179 SNFVQGFDEYKANVEKYTPEYAERITGVRAADIRKVMRQYAKSGKAMILYGMGXXXXCQF 238 ++ +GF+EY+ VE YTPE E ITGV A++IR+ R YA++ A IL+GMG QF Sbjct: 246 ASRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAKSAAILWGMGVT---QF 302 Query: 239 AQAVDVVKGLASLALLTGHFGRESVGIGPVRGQNNVQGSCDMGALPNVYPGYQSVEDAKI 298 Q V+ V+ L SLA+LTG+ G+ G+ PVRGQNNVQG+CDMGALP+ YPGYQ V+D Sbjct: 303 YQGVETVRSLTSLAMLTGNLGKPHAGVNPVRGQNNVQGACDMGALPDTYPGYQYVKDPAN 362 Query: 299 RKKFEKAWGT-SLPDKTGYRLTEVPHLILKENKIKAYYIFGEDPVQSDPNAAELREALDQ 357 R+KF KAWG SLP TGYR++E+PH +++A YI GEDP+Q+D + +R+A + Sbjct: 363 REKFAKAWGVESLPAHTGYRISELPHR-AAHGEVRAAYIMGEDPLQTDAELSAVRKAFED 421 Query: 358 LELVIVQDIFMNKTALHADVILPATSWGEHDGVYSSADRGFQRIRKAIDPPGDVKPDWQI 417 LELVIVQDIFM KTA ADVILP+TSWGEH+GV+++ADRGFQR KA++P D+K DWQI Sbjct: 422 LELVIVQDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEPKWDLKTDWQI 481 Query: 418 ISEVSTAMGYPMAYKNSEEIWDEMRKLCPSFAGASYSKMEALGGVQWPC--PSEDHPGTP 475 ISE++T MGYPM Y N++EIWDE+R LCP F GA+Y KM LG +QWPC S+ GT Sbjct: 482 ISEIATRMGYPMHYNNTQEIWDELRHLCPDFYGATYEKMGELGFIQWPCRDTSDADQGTS 541 Query: 476 YLYQGNRFTTPSGKGQLFACEWRAPLEQPDAEYPLTLSTVREVGHYSVRTMTGNCRALSQ 535 YL++ +F TP+G Q F C+W AP+++ EYP+ LSTVREVGHYS R+MTGNC AL+ Sbjct: 542 YLFK-EKFDTPNGLAQFFTCDWVAPIDKLTDEYPMVLSTVREVGHYSCRSMTGNCAALAA 600 Query: 536 LSDEPGNIQISLEDAAEHGIADGQLVQVYSRRGHIMARAQVSGRIKKGATYMTYHFWIGA 595 L+DEPG QI+ EDA GI D LV V+SR+G I+ RAQVS R KGA YMTY +WIGA Sbjct: 601 LADEPGYAQINTEDAKRLGIEDEALVWVHSRKGKIITRAQVSDRPNKGAIYMTYQWWIGA 660 Query: 596 CNELTVDYLDPVSKTPEFKYCAVRIEAISDQAQAEALVRKQYAELRKQMLVGAV 649 CNEL + L P++KTPE+KYCAVR+E I+DQ AE V +Y +L+ ++ A+ Sbjct: 661 CNELVTENLSPITKTPEYKYCAVRVEPIADQRAAEQYVIDEYNKLKTRLREAAL 714 >gb|AAC43173.1| formate dehydrogenase-H alpha subunit Length = 715 Score = 809 bits (2089), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/654 (59%), Positives = 494/654 (75%), Gaps = 10/654 (1%) Query: 1 MIRKE--GVLQEVSWEEAIGFTAEKLNAIKEKYGPDAIMGTGSARGPGNEANYVMQKFMR 58 MIR++ G L+ VSW+EA+ + AE+L+AIKEKYGPDAI TGS+RG GNE NYVMQKF R Sbjct: 66 MIRRQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFAR 125 Query: 59 AVIGTNNIDHCARVCHGPSVAGLTYSLGDGAMSNSIPEIENTDLLLIFGYNAAVTHPIVA 118 AVIGTNN+D CARVCHGPSVAGL S+G+GAMSN+I EI+NTDL+ +FGYN A +HPIVA Sbjct: 126 AVIGTNNVDCCARVCHGPSVAGLHQSVGNGAMSNAINEIDNTDLVFVFGYNPADSHPIVA 185 Query: 119 RRIVKAKQKGAVLIVADPRKTESARIADTWLPLKGGTNMALVNAFGHVLIEEELYDKDYV 178 ++ AK+ GA +IV DPRK E+ARIAD + LK G+N+AL+NA GHV+IEE LYDK +V Sbjct: 186 NHVINAKRNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAMGHVIIEENLYDKAFV 245 Query: 179 SNFVQGFDEYKANVEKYTPEYAERITGVRAADIRKVMRQYAKSGKAMILYGMGXXXXCQF 238 ++ +GF+EY+ VE YTPE E ITGV A++IR+ R YA++ A IL+GMG QF Sbjct: 246 ASRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAKSAAILWGMGVT---QF 302 Query: 239 AQAVDVVKGLASLALLTGHFGRESVGIGPVRGQNNVQGSCDMGALPNVYPGYQSVEDAKI 298 Q V+ V+ L SLA+LTG+ G+ G+ PVRGQNNVQG+CDMGALP+ YPGYQ V+D Sbjct: 303 YQGVETVRSLTSLAMLTGNLGKPHAGVNPVRGQNNVQGACDMGALPDTYPGYQYVKDPAN 362 Query: 299 RKKFEKAWGT-SLPDKTGYRLTEVPHLILKENKIKAYYIFGEDPVQSDPNAAELREALDQ 357 R+KF KAWG SLP TGY ++E+PH +++A YI GEDP+Q+D + +R+A + Sbjct: 363 REKFAKAWGVESLPAHTGYXISELPHR-AAHGEVRAAYIMGEDPLQTDAELSAVRKAFED 421 Query: 358 LELVIVQDIFMNKTALHADVILPATSWGEHDGVYSSADRGFQRIRKAIDPPGDVKPDWQI 417 LELVIVQDIFM KTA ADVILP+TSWGEH+GV+++ADRGFQR KA++P D+K DWQI Sbjct: 422 LELVIVQDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEPKWDLKTDWQI 481 Query: 418 ISEVSTAMGYPMAYKNSEEIWDEMRKLCPSFAGASYSKMEALGGVQWPC--PSEDHPGTP 475 ISE++T MGYPM Y N++EIWDE+R LCP F GA+Y KM LG +QWPC S+ GT Sbjct: 482 ISEIATRMGYPMHYNNTQEIWDELRHLCPDFYGATYEKMGELGFIQWPCRDTSDADQGTS 541 Query: 476 YLYQGNRFTTPSGKGQLFACEWRAPLEQPDAEYPLTLSTVREVGHYSVRTMTGNCRALSQ 535 YL++ +F TP+G Q F C+W AP+++ EYP+ LSTVREVGHYS R+MTGNC AL+ Sbjct: 542 YLFK-EKFDTPNGLAQFFTCDWVAPIDKLTDEYPMVLSTVREVGHYSCRSMTGNCAALAA 600 Query: 536 LSDEPGNIQISLEDAAEHGIADGQLVQVYSRRGHIMARAQVSGRIKKGATYMTYHFWIGA 595 L+DEPG QI+ EDA GI D LV V+SR+G I+ RAQVS R KGA YMTY +WIGA Sbjct: 601 LADEPGYAQINTEDAKRLGIEDEALVWVHSRKGKIITRAQVSDRPNKGAIYMTYQWWIGA 660 Query: 596 CNELTVDYLDPVSKTPEFKYCAVRIEAISDQAQAEALVRKQYAELRKQMLVGAV 649 CNEL + L P++KTPE+KYCAVR+E I+DQ AE V +Y +L+ ++ A+ Sbjct: 661 CNELVTENLSPITKTPEYKYCAVRVEPIADQRAAEQYVIDEYNKLKTRLREAAL 714 >ref|NP_756934.1| Formate dehydrogenase H [Escherichia coli CFT073] gb|AAN83508.1| Formate dehydrogenase H [Escherichia coli CFT073] Length = 715 Score = 808 bits (2086), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/654 (59%), Positives = 495/654 (75%), Gaps = 10/654 (1%) Query: 1 MIRKE--GVLQEVSWEEAIGFTAEKLNAIKEKYGPDAIMGTGSARGPGNEANYVMQKFMR 58 MIR++ G L+ VSW+EA+ + AE+L+AIKEKYGPDAI TGS+RG GNE NYVMQKF R Sbjct: 66 MIRRQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFAR 125 Query: 59 AVIGTNNIDHCARVCHGPSVAGLTYSLGDGAMSNSIPEIENTDLLLIFGYNAAVTHPIVA 118 AVIGTNN+D CARV HGPSVAGL S+G+GAMSN+I EI+NTDL+ +FGYN A +HPIVA Sbjct: 126 AVIGTNNVDCCARVUHGPSVAGLHQSVGNGAMSNAINEIDNTDLVFVFGYNPADSHPIVA 185 Query: 119 RRIVKAKQKGAVLIVADPRKTESARIADTWLPLKGGTNMALVNAFGHVLIEEELYDKDYV 178 ++ AK+ GA +IV DPRK E+ARIAD + LK G+N+AL+NA GHV+IEE LYDK +V Sbjct: 186 NHVINAKRNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAMGHVIIEENLYDKAFV 245 Query: 179 SNFVQGFDEYKANVEKYTPEYAERITGVRAADIRKVMRQYAKSGKAMILYGMGXXXXCQF 238 ++ +GF+EY+ VE YTPE E ITGV A++IR+ R YA++ A IL+GMG QF Sbjct: 246 ASRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAESAAILWGMGVT---QF 302 Query: 239 AQAVDVVKGLASLALLTGHFGRESVGIGPVRGQNNVQGSCDMGALPNVYPGYQSVEDAKI 298 Q V+ V+ L SLA+LTG+ G+ G+ PVRGQNNVQG+CDMGALP+ YPGYQ V+D Sbjct: 303 YQGVETVRSLTSLAMLTGNLGKPHAGVNPVRGQNNVQGACDMGALPDTYPGYQYVKDPAN 362 Query: 299 RKKFEKAWGT-SLPDKTGYRLTEVPHLILKENKIKAYYIFGEDPVQSDPNAAELREALDQ 357 R+KF KAWG SLP TGYR++E+PH + +++A YI GEDP+Q+D + +R+A + Sbjct: 363 REKFAKAWGVESLPAHTGYRISELPHRV-AHGEVRAAYIMGEDPLQTDAELSAVRKAFED 421 Query: 358 LELVIVQDIFMNKTALHADVILPATSWGEHDGVYSSADRGFQRIRKAIDPPGDVKPDWQI 417 LELVIVQDIFM KTA ADVILP+TSWGEH+GV+++ADRGFQR KA++P D+K DWQI Sbjct: 422 LELVIVQDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEPKWDLKTDWQI 481 Query: 418 ISEVSTAMGYPMAYKNSEEIWDEMRKLCPSFAGASYSKMEALGGVQWPC--PSEDHPGTP 475 ISE++T MGYPM Y N++EIWDE+R LCP F GA+Y KM LG +QWPC S+ GT Sbjct: 482 ISEIATRMGYPMHYNNTQEIWDELRHLCPDFYGATYEKMGELGFIQWPCRDTSDADQGTS 541 Query: 476 YLYQGNRFTTPSGKGQLFACEWRAPLEQPDAEYPLTLSTVREVGHYSVRTMTGNCRALSQ 535 YL++ +F TP+G Q F C+W AP+++ EYP+ LSTVREVGHYS R+MTGNC AL+ Sbjct: 542 YLFK-EKFDTPNGLAQFFTCDWVAPIDKLTDEYPMVLSTVREVGHYSCRSMTGNCAALAA 600 Query: 536 LSDEPGNIQISLEDAAEHGIADGQLVQVYSRRGHIMARAQVSGRIKKGATYMTYHFWIGA 595 L+DEPG QI+ EDA GI D LV V+SR+G I+ RAQVS R KGA YMTY +WIGA Sbjct: 601 LADEPGYAQINTEDAKRLGIEDEALVWVHSRKGKIITRAQVSDRPNKGAIYMTYQWWIGA 660 Query: 596 CNELTVDYLDPVSKTPEFKYCAVRIEAISDQAQAEALVRKQYAELRKQMLVGAV 649 CNEL + L P++KTPE+KYCAVR+E I+DQ AE V +Y +L+ ++ A+ Sbjct: 661 CNELVTENLSPITKTPEYKYCAVRVEPIADQRAAEQYVIDEYNKLKTRLREAAL 714 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 994,908,057 Number of extensions: 42660264 Number of successful extensions: 100498 Number of sequences better than 1.0e-05: 1504 Number of HSP's gapped: 97185 Number of HSP's successfully gapped: 1723 Length of query: 651 Length of database: 757,237,578 Length adjustment: 132 Effective length of query: 519 Effective length of database: 398,844,510 Effective search space: 207000300690 Effective search space used: 207000300690 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)