BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0012.p (296 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_631550.1| putative integral membrane binding-protein-depe... 209 9e-53 ref|NP_626676.1| putative sugar transporter membrane protein [St... 184 2e-45 ref|NP_469563.1| similar to sugar ABC transporters, permease pro... 170 3e-41 ref|NP_244556.1| sugar transport system (permease) [Bacillus hal... 164 3e-39 ref|NP_624853.1| probable sugar transporter membrane protein [St... 161 1e-38 >ref|NP_631550.1| putative integral membrane binding-protein-dependent transport protein [Streptomyces coelicolor A3(2)] emb|CAC44682.1| putative integral membrane binding-protein-dependent transport protein [Streptomyces coelicolor A3(2)] Length = 316 Score = 209 bits (531), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 105/264 (39%), Positives = 172/264 (65%), Gaps = 5/264 (1%) Query: 10 AQALLFLLPFLIVYGLFTIWPMFKGVEMTFYKWTL-IRKMDFLGWDNYSKVLQDREVWEA 68 L+F+LPFL+V+GLF +WP+ +G+ M+ +L +R F+G+DNY++ D +VW + Sbjct: 36 GNGLVFVLPFLLVFGLFMVWPIVQGLWMSLTDSSLALRDPGFVGFDNYTEAFGDPDVWSS 95 Query: 69 LGHSLIFVVLTTPTMLVLSISLALIANRKSMLQKFYRSIFFIPSVLSVAVASYLGLFVFQ 128 LG+++ F +++ ++++++++AL+ + Q +R FF P +L V V + + +++Q Sbjct: 96 LGNTVFFTGVSSVPLVLVALAMALLVHSGLAGQWAWRLSFFAPYLLPVTVVTMIWTWLYQ 155 Query: 129 PYTGLVNSVLHLIHLLPGGTEIFWLTETRLAWIAITLITLWWTVGFNFILHLSAIQEIPD 188 P G+ N +L + + P G WL++ +A ++ +T+WWTVGFNF+L+L+A+Q +P Sbjct: 156 PELGMANQLLDALGMAPVG----WLSDESVAMWSVAALTVWWTVGFNFLLYLAALQSLPT 211 Query: 189 EIYEAARLDGAGDRQMFWRITLPYLAPITKTITMLQIIASFKVFMQIYIVTGGGPLDSTR 248 EAA LDGAG + W ITLP L T + MLQ++AS KVF QIYI+T GGP STR Sbjct: 212 TFDEAAALDGAGAWRRLWSITLPQLRRTTGLVAMLQVLASLKVFDQIYILTKGGPNGSTR 271 Query: 249 PIIQLIYQTGFKSNDLGYAATMSY 272 P+++ +Y GF LGYA+ +SY Sbjct: 272 PVLEYVYDVGFTGYRLGYASAVSY 295 >ref|NP_626676.1| putative sugar transporter membrane protein [Streptomyces coelicolor A3(2)] emb|CAB86098.1| putative sugar transporter membrane protein [Streptomyces coelicolor A3(2)] Length = 313 Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 109/286 (38%), Positives = 164/286 (57%), Gaps = 13/286 (4%) Query: 15 FLLPFLIVYGLFTIWPMFKGVEMTFYKWTLI-RKMDFLGWDNYSKVLQDREVWEALGHSL 73 F+ PFL ++ LF +WP+ +G+ ++F + +F+G DNY + L+D +W+ALGHS Sbjct: 36 FVAPFLALFALFVVWPLLRGLYLSFTDANISGDSANFIGLDNYREALKDPLMWDALGHSA 95 Query: 74 IFVVLTTPTMLVLSISLALIANRKSMLQKFYRSIFFIPSVLSVAVASYLGLFVFQPYTGL 133 F +L P + VL++ LA++A+ + +R FF+P +L VA+ L ++F P TG+ Sbjct: 96 YFTLLVVPCITVLALLLAMLAHHIERGKWLWRLCFFLPFLLPSTVAANLWQWLFNPGTGM 155 Query: 134 VNSVLHLIHLLPGGTEIFWLTETRLAWIAITLITLWWTVGFNFILHLSAIQEIPDEIYEA 193 VN V G E WLT+ A +A+ + TLWWTVGF+F+L+L+A+Q IP +YEA Sbjct: 156 VNHVF--------GLETPWLTDKSYAMLAVVITTLWWTVGFSFLLYLAALQGIPAHLYEA 207 Query: 194 ARLDGAGDRQMFWRITLPYLAPITKTITMLQIIASFKVFMQIYIVT--GGGPLDSTRPII 251 A+LDGA ITLP L IT + LQI+AS +VF Q ++ G GP DSTR + Sbjct: 208 AKLDGANAWHRILHITLPMLRNITGLVVALQILASLQVFDQAVVIQDFGPGPEDSTRTFV 267 Query: 252 QLIYQTGFKSNDLGYAATMSYXXXXXXXXXXXXQYWM--NNRKGAE 295 Q + GF S +GYA+ +S + W+ N +G Sbjct: 268 QYTLEQGFTSYRVGYASAISIIFFVLIAAVALARMWLLRNREEGGR 313 >ref|NP_469563.1| similar to sugar ABC transporters, permease proteins [Listeria innocua] ref|NP_463710.1| similar to sugar ABC transporters, permease proteins [Listeria monocytogenes EGD-e] pir||AC1460 sugar ABC transporters, permease protein homolog lin0218 [imported] - Listeria innocua (strain Clip11262) pir||AD1097 sugar ABC transporters, permease proteins homolog lmo0179 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98394.1| lmo0179 [Listeria monocytogenes] emb|CAC95451.1| lin0218 [Listeria innocua] Length = 292 Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 156/260 (60%), Gaps = 4/260 (1%) Query: 13 LLFLLPFLIVYGLFTIWPMFKGVEMTFYKWTLIRKMDFLGWDNYSKVLQDREVWEALGHS 72 +FLLP L+ + +F P+ + ++F W L+ + F G++NY ++ D E W++ ++ Sbjct: 14 CIFLLPNLLGFLIFIAIPILGSLGISFTDWDLVSTIHFTGFENYKRLFNDPEFWKSFRNT 73 Query: 73 LIFVVLTTPTMLVLSISLALIANRKSMLQKFYRSIFFIPSVLSVAVASYLGLFVFQPYTG 132 + F++ P++++L ++ AL+ N+K L+ F+R+++F+P + S S + ++F P G Sbjct: 74 ITFIIGYLPSVMILGLACALMLNQKIKLRPFFRAVYFLPVITSWVAVSLVWKWLFNPSYG 133 Query: 133 LVNSVLHLIHLLPGGTEIFWLTETRLAWIAITLITLWWTVGFNFILHLSAIQEIPDEIYE 192 L+N L LI + G WLT+ + A IA+ + + W +GF +L L +Q I YE Sbjct: 134 LINYFLSLIGI--AGPN--WLTDPQTAMIAVIITSAWKDIGFVMVLFLGGLQNISPSYYE 189 Query: 193 AARLDGAGDRQMFWRITLPYLAPITKTITMLQIIASFKVFMQIYIVTGGGPLDSTRPIIQ 252 AA +DGA + + IT+P L P T +T++ +I SF+VF Q+ I+T GGP +T ++Q Sbjct: 190 AANMDGASKLRQLFSITIPLLTPTTFFVTIISLINSFQVFDQVMIMTEGGPSGATMTLVQ 249 Query: 253 LIYQTGFKSNDLGYAATMSY 272 IY F+ ++GYA+ MS+ Sbjct: 250 NIYNHAFRYFEMGYASAMSW 269 >ref|NP_244556.1| sugar transport system (permease) [Bacillus halodurans] pir||A84111 sugar transport system (permease) BH3689 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07408.1| sugar transport system (permease) [Bacillus halodurans] Length = 300 Score = 164 bits (415), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 95/267 (35%), Positives = 155/267 (58%), Gaps = 8/267 (2%) Query: 4 KKWRADAQALLFLLPFLIVYGLFTIWPMFKGVEMTFYKWTLIRKM-DFLGWDNYSKVLQD 62 + R Q FL P L+ G+F + P+ + ++F K L+ +F+G++NY+++ D Sbjct: 9 RAIREAFQGYAFLTPALVTIGVFILLPILYAIYLSFQKVNLLAGFSEFVGFNNYARITDD 68 Query: 63 REVWEALGHSLIFVVLTTPTMLVLSISLALIANRKSMLQKFYRSIFFIPSVLSVAVASYL 122 AL ++ +V + PT +L++ LA N K F+R +FF+P++ S AV + + Sbjct: 69 YRAGIALRNTAFYVAIVVPTQTILALILAACLNAKIKGTNFFRVVFFLPTLTSSAVLALI 128 Query: 123 GLFVFQPYTGLVNSVLHLIHLLPGGTEIFWLTETRLAWIAITLITLWWTVGFNFILHLSA 182 +F++ GLVN VL + L WL + +A +AI ++ +W T F +++L+A Sbjct: 129 FMFMYNNQNGLVNQVLASLGL----PTYNWLGDPSVALLAIMIMNIWATAPFYMVIYLAA 184 Query: 183 IQEIPDEIYEAARLDGAGDRQMFWRITLPYLAPITKTITMLQIIASFKVFMQIYIVTG-- 240 +++IP +YEAA LDGA Q F IT+P L PIT + ++ II +F++F Q YI +G Sbjct: 185 LKDIPASLYEAADLDGASTIQKFRYITVPMLRPITSFVVIMGIIGTFQLFDQSYIFSGGS 244 Query: 241 GGPLDSTRPIIQLIYQTGFKSND-LGY 266 GGP +ST I+ LIYQ F+S D +GY Sbjct: 245 GGPDNSTLTIVLLIYQYAFQSYDQMGY 271 >ref|NP_624853.1| probable sugar transporter membrane protein [Streptomyces coelicolor A3(2)] emb|CAB59596.1| probable sugar transporter membrane protein [Streptomyces coelicolor A3(2)] Length = 316 Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 90/253 (35%), Positives = 145/253 (57%), Gaps = 5/253 (1%) Query: 20 LIVYGLFTIWPMFKGVEMTFYKWTLIRKMDFLGWDNYSKVLQDREVWEALGHSLIFVVLT 79 LIV GL +I P+ + ++F L+ ++G DNY + QD +A+ ++L++ VL Sbjct: 40 LIVLGL-SIVPVVWSLLLSFQASDLVTPSRWVGLDNYRALAQDPNFSQAVRNTLLYTVLY 98 Query: 80 TPTMLVLSISLALIANRKSMLQKFYRSIFFIPSVLSVAVASYLGLFVFQPYTGLVNSVLH 139 P L+ ++LA++ NR+ YR++ F+P VLS L F+ P G NSVLH Sbjct: 99 VPLSLLFGLALAMVLNRRIRFVGLYRTLIFVPFVLSATAQGVLFSFILDPEFGAANSVLH 158 Query: 140 LIHLLPGGTEIFWLTETRLAWIAITLITLWWTVGFNFILHLSAIQEIPDEIYEAARLDGA 199 + + G +L++ A + + ITLW GF +++L+A+Q++P + EAARLDGA Sbjct: 159 RLGVSSQG----FLSDPSQALLVLVAITLWSGTGFCVVVYLAALQDVPQSLIEAARLDGA 214 Query: 200 GDRQMFWRITLPYLAPITKTITMLQIIASFKVFMQIYIVTGGGPLDSTRPIIQLIYQTGF 259 G R + +T+P L P+T + + Q I S +VF +Y+ T GGPL ST I+ I++ F Sbjct: 215 GRRHLLRHVTMPTLTPVTVFLVLWQAIQSLQVFDLVYVTTKGGPLGSTTVIVYFIWEQAF 274 Query: 260 KSNDLGYAATMSY 272 K+ GY A+ +Y Sbjct: 275 KNATAGYGASAAY 287 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.329 0.142 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 421,831,771 Number of extensions: 16429533 Number of successful extensions: 62555 Number of sequences better than 1.0e-05: 1365 Number of HSP's gapped: 61221 Number of HSP's successfully gapped: 1372 Length of query: 296 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 171 Effective length of database: 417,850,203 Effective search space: 71452384713 Effective search space used: 71452384713 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 125 (52.8 bits)