BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0502.0031.p (207 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242831.1| transcriptional regulator (TetR/AcrR family) [B... 224 8e-58 ref|NP_976540.1| transcription regulator (TetR/AcrR family) BH19... 130 2e-29 ref|NP_622004.1| Transcriptional regulator [Thermoanaerobacter t... 108 1e-22 ref|NP_391400.1| similar to transcriptional regulator (TetR/AcrR... 91 2e-17 ref|NP_953780.1| transcriptional regulator, TetR family [Geobact... 81 2e-14 >ref|NP_242831.1| transcriptional regulator (TetR/AcrR family) [Bacillus halodurans] pir||E83895 transcription regulator (TetR/AcrR family) BH1965 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05684.1| transcriptional regulator (TetR/AcrR family) [Bacillus halodurans] Length = 196 Score = 224 bits (572), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 108/189 (57%), Positives = 144/189 (76%), Gaps = 1/189 (0%) Query: 7 GSAEKLLHAAIDLISEKGYNGVTTQEIAAAAGLSEKTLFRHFGSKQKLLESALERFQYAE 66 G++EKL+ AAIDLISE+GYNGVTT EIAAAAG SEKTLFRHFGSKQ LLE A +RF Y E Sbjct: 7 GTSEKLMIAAIDLISERGYNGVTTLEIAAAAGFSEKTLFRHFGSKQNLLEQAFDRFHYGE 66 Query: 67 EIQILFSEKLVWELESDLLSISKKYHEIMNRDRKLIQIALKDEVHIPGFKESRLQHPRQL 126 E++ LF EKLVW+L DLL IS+ YH IMNR+RK+IQIA+K+ ++PGF+E +HP+QL Sbjct: 67 EMKGLFKEKLVWDLHEDLLMISQTYHTIMNRNRKMIQIAIKEGKNLPGFRERTHRHPQQL 126 Query: 127 LTLLTEYFNKMNEKGKVASSNPTMQAFTFMMAQYGAFINDLEAG-NNYPGISLDQFIQEN 185 LT YF++M +K K+ +P A +FM+ +GAFIN+L++ + +SL++FI + Sbjct: 127 KEFLTTYFSEMIKKRKMIDVHPEHTAVSFMLLNFGAFINELDSDKKRFTNVSLEEFITNS 186 Query: 186 VKIFVRSLT 194 V++F R LT Sbjct: 187 VRVFTRGLT 195 >ref|NP_976540.1| transcription regulator (TetR/AcrR family) BH1965 [imported] [Bacillus cereus ATCC 10987] gb|AAS39148.1| transcription regulator (TetR/AcrR family) BH1965 [imported] [Bacillus cereus ATCC 10987] Length = 193 Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 112/190 (58%) Query: 4 TKQGSAEKLLHAAIDLISEKGYNGVTTQEIAAAAGLSEKTLFRHFGSKQKLLESALERFQ 63 + +AEK++ AAI+L+ EKGY TT+EIA AG++E T+FR+F SK+ ++E+A+ F Sbjct: 2 ARSKTAEKIIQAAIELVKEKGYTAATTKEIAMRAGVNEVTIFRNFKSKKGVIEAAVAEFS 61 Query: 64 YAEEIQILFSEKLVWELESDLLSISKKYHEIMNRDRKLIQIALKDEVHIPGFKESRLQHP 123 Y ++ ++VWELE+DL ++++ YH ++ + +I I +++ P + P Sbjct: 62 YVPHLKKFLQTEIVWELETDLKNLARHYHNFLDGVKDIIAIGIREAGEFPELDGEIAKIP 121 Query: 124 RQLLTLLTEYFNKMNEKGKVASSNPTMQAFTFMMAQYGAFINDLEAGNNYPGISLDQFIQ 183 + L L+ YF KM EKG + +N Q F+ +G F++ L + + ++FI+ Sbjct: 122 QGLKEELSIYFAKMREKGNIIDTNIEAQVMNFIWINFGYFLSKLRFADRLTEVDDEKFIE 181 Query: 184 ENVKIFVRSL 193 N+ ++ R+L Sbjct: 182 NNIVLYARAL 191 >ref|NP_622004.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] gb|AAM23608.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] Length = 194 Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 104/185 (56%) Query: 10 EKLLHAAIDLISEKGYNGVTTQEIAAAAGLSEKTLFRHFGSKQKLLESALERFQYAEEIQ 69 EK++ + + LISEKGY TT+ IA AG++E T+FR F SK+ ++ AL+ + + + Sbjct: 7 EKIVVSTLKLISEKGYRSTTTRNIAEEAGVNEVTIFRCFRSKKDIVLYALKELELLKPMD 66 Query: 70 ILFSEKLVWELESDLLSISKKYHEIMNRDRKLIQIALKDEVHIPGFKESRLQHPRQLLTL 129 EK W+L+ DLL ++++YH+ D+ I I L+ KE ++ P+ + Sbjct: 67 KKILEKCKWDLKEDLLMLAEEYHKNFTEDKAKIMIGLRSPEIFEEVKEYLIRIPKGFKDV 126 Query: 130 LTEYFNKMNEKGKVASSNPTMQAFTFMMAQYGAFINDLEAGNNYPGISLDQFIQENVKIF 189 L EYF M +KG + + + + AF+F+ +G + G G S D+F++ +++IF Sbjct: 127 LIEYFKIMYQKGMLNNDDFELLAFSFLSLNFGFILMKASYGRKLIGFSNDEFVRRSIEIF 186 Query: 190 VRSLT 194 V+ + Sbjct: 187 VKGIA 191 >ref|NP_391400.1| similar to transcriptional regulator (TetR/AcrR family) [Bacillus subtilis] pir||H70042 transcription regulator TetR/AcrR family homolog yvkB - Bacillus subtilis gb|AAC67267.1| YvkB [Bacillus subtilis] emb|CAB15537.1| yvkB [Bacillus subtilis subsp. subtilis str. 168] Length = 189 Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 102/194 (52%), Gaps = 7/194 (3%) Query: 1 MRPTKQGSAEKLLHAAIDLISEKGYNGVTTQEIAAAAGLSEKTLFRHFGSKQKLLESALE 60 MRPT + ++L AA+ L+ +KGY TT+EIA A +SE T+FR+F +KQ L+E+ L Sbjct: 1 MRPTNK----RILDAAMQLLVKKGYRATTTKEIAEKANVSEATIFRNFKNKQGLVEALLS 56 Query: 61 RFQYAEEIQILFSEKLVWELESDLLSISKKYHEIMNRDRKLIQIALKDEVHIPGFKESRL 120 + + IL E+ +L DLL I E + + +I+I+ ++ Sbjct: 57 Q-HSSNRGSIL--EQTEGDLYKDLLHIGTCLLEELEHRKDIIKISFREPAMFQDVINHVT 113 Query: 121 QHPRQLLTLLTEYFNKMNEKGKVASSNPTMQAFTFMMAQYGAFINDLEAGNNYPGISLDQ 180 ++P+ + LL +Y M EKG + + N A FM +G FI+ L G+ + ++ Sbjct: 114 EYPQSMKQLLVDYLKTMGEKGVIQTGNEAEHADVFMSIIFGYFIHRLHLGDRVISMPQEK 173 Query: 181 FIQENVKIFVRSLT 194 ++ + +FV+ ++ Sbjct: 174 MLEHSTALFVKGIS 187 >ref|NP_953780.1| transcriptional regulator, TetR family [Geobacter sulfurreducens PCA] gb|AAR36107.1| transcriptional regulator, TetR family [Geobacter sulfurreducens PCA] Length = 201 Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 95/184 (51%), Gaps = 4/184 (2%) Query: 10 EKLLHAAIDLISEKGYNGVTTQEIAAAAGLSEKTLFRHFGSKQKLLESALERFQYAEEIQ 69 E++L A+ L S KGY G TT+EIA AG++E TLFRHF SK+KLLE A+ R+ ++ Sbjct: 4 ERILETALGLFSTKGYLGATTREIARQAGIAEVTLFRHFPSKEKLLEEAITRYSILPSLR 63 Query: 70 ILFSEKLVWELESDLLSISKKYHEIMNRDRKLIQIALKDEVHIPGFKESRLQHP--RQLL 127 L E L +++ + + + + ++I + EV K + H +L Sbjct: 64 AFVPRALAMPYEDALAAMANILLDTLIQLKDWLRI-MHAEVQRSPEKLLGVYHTFLDELF 122 Query: 128 TLLTEYFNKMNEKGKVASSNPTMQAFTFMMAQYGAF-INDLEAGNNYPGISLDQFIQENV 186 ++ YF ++ ++G + S +P + A F Y F I ++ Y ++ ++E V Sbjct: 123 EVIASYFRELQQRGSIGSFDPELGARVFHAMFYCFFNIEEVLLRKQYRPTDREKAVREFV 182 Query: 187 KIFV 190 ++FV Sbjct: 183 RMFV 186 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.132 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 285,655,122 Number of extensions: 10799360 Number of successful extensions: 34652 Number of sequences better than 1.0e-05: 32 Number of HSP's gapped: 34698 Number of HSP's successfully gapped: 32 Length of query: 207 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 87 Effective length of database: 431,425,698 Effective search space: 37534035726 Effective search space used: 37534035726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)