BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0502.0022.p (354 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_437577.1| putative exported oxidoreductase protein [Sinor... 279 8e-74 ref|NP_103080.1| hypothetical protein mll1511 [Mesorhizobium lot... 278 1e-73 ref|NP_356292.1| AGR_L_1005p [Agrobacterium tumefaciens] >gi|179... 278 1e-73 gb|EAD22625.1| unknown [environmental sequence] 211 2e-53 gb|EAE20198.1| unknown [environmental sequence] 206 1e-51 >ref|NP_437577.1| putative exported oxidoreductase protein [Sinorhizobium meliloti 1021] pir||E95971 probable exported oxidoreductase protein SMb21597 [imported] - Sinorhizobium meliloti (strain 1021) magaplasmid pSymB emb|CAC49437.1| putative exported oxidoreductase protein [Sinorhizobium meliloti] Length = 343 Score = 279 bits (713), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 155/343 (45%), Positives = 206/343 (60%), Gaps = 10/343 (2%) Query: 5 YRVAVAGCGGMANEWI-SYAVRR---PDVRIVALVDIRLDAAAAMAGKHGLTCPVF-TDI 59 R + GCG MA W+ + A R +RIV L+D+ +AA A+A + + V +D+ Sbjct: 4 LRAVLCGCGAMAKGWLKAIAADRELQSAIRIVGLIDVNPEAARALAAEFEIEGAVVGSDL 63 Query: 60 GEAIEQTGANLVFDVTIPASHYRVASTALTHQCDVFSEKPLAETMEHCNAIVALAERTGK 119 + +T +++FD+ +PA+ V +TAL H C V SEKP+A ++E ++ LA G+ Sbjct: 64 DAVLTETAPDILFDIVVPAARRDVVATALRHGCHVLSEKPMAASLEAARELIELARNAGR 123 Query: 120 SHAVMQNRRYDPRIRSLRRLIEAGEIGRIGYIGAGFFLAPHFGGFRDAMESPLLLDMAIH 179 HA++QNRR+ IR +RR IE+G IG + I FF+ HFGGFR+ ME LLLDMAIH Sbjct: 124 IHAIVQNRRFISGIRRIRRFIESGAIGDLTGIHCDFFIGAHFGGFREEMEHVLLLDMAIH 183 Query: 180 TFDQARFISGADPVTVYCQEFNPPGSWYAGNASAVCIFEMSDGSVFCYQGSWCAEGAPTS 239 TFD ARFI+ P+ VYC E NP GSWYA A+A IFE+SD F Y+GSWCAEGA TS Sbjct: 184 TFDAARFIADKTPLAVYCHEENPQGSWYAHGAAATAIFELSDDVTFTYRGSWCAEGANTS 243 Query: 240 WEATWRIQGDKGTAIWDGEGMPYAEKVTDRSPDGEFIRDHDRVE-GEAADLKETF-HYGC 297 WE+ WRI G KGT +WDG A +V F R VE EAAD ET H Sbjct: 244 WESEWRIIGTKGTLLWDGAEALSANRVAGSEG---FFRPLVPVEVPEAADPLETHGHASV 300 Query: 298 LEEMFQALAERRPAETDCRDNRYSMAMVFGALESARTGRKVEL 340 + + A+ ET DN S+AMVF A+ESART ++V + Sbjct: 301 IADFVAAVRSGTKPETAGDDNFNSLAMVFAAIESARTRQRVTI 343 >ref|NP_103080.1| hypothetical protein mll1511 [Mesorhizobium loti MAFF303099] dbj|BAB48866.1| hypothetical protein [Mesorhizobium loti] Length = 343 Score = 278 bits (712), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 149/346 (43%), Positives = 205/346 (59%), Gaps = 21/346 (6%) Query: 7 VAVAGCGGMANEWISYAVRRPDVRIVALVDIRLDAAAAMAGKHGLTCPVF-TDIGEAIEQ 65 V + GCG M+ +W+ A + + IV LVD+ + A A A ++ L + T + ++Q Sbjct: 4 VVLVGCGAMSRQWLDAARQIDGLAIVGLVDLDAERAKARAHEYDLAGIIIGTSLDAVLDQ 63 Query: 66 TGANLVFDVTIPASHYRVASTALTHQCDVFSEKPLAETMEHCNAIVALAERTGKSHAVMQ 125 T + VFDV +PA+ VA +A H C + +EKPLA++ E+ AIV A + G+ HAV+Q Sbjct: 64 TRPDAVFDVVVPAARRAVALSAFAHNCHLLTEKPLADSPENARAIVEAARQAGRIHAVVQ 123 Query: 126 NRRYDPRIRSLRRLIEAGEIGRIGYIGAGFFLAPHFGGFRDAMESPLLLDMAIHTFDQAR 185 NRRY +R +RR +++G IG I A FF+APHFGGFR+ M LLLDMAIHTFD AR Sbjct: 124 NRRYVANVRRIRRFLDSGAIGNPTSIHADFFVAPHFGGFREEMAHVLLLDMAIHTFDAAR 183 Query: 186 FISGADPVTVYCQEFNPPGSWYAGNASAVCIFEMSDGSVFCYQGSWCAEGAPTSWEATWR 245 +++G +P VYCQE+ P SWY +SA +F++ G VF Y GSWCA+G TSWE +WR Sbjct: 184 YMAGGEPAGVYCQEWEPANSWYRQGSSASAVFDLGGGKVFTYAGSWCADGFRTSWEGSWR 243 Query: 246 IQGDKGTAIWDGEGMPYAEKVTDRSPDGEFIRDH----------DRVEGEAADLKETFHY 295 I ++G+ IWDG + AE V DG F + DRV G H Sbjct: 244 IVAERGSLIWDGHDLLTAEVVAT-GRDGLFAKTQPIDVPPLDPADRVGG---------HL 293 Query: 296 GCLEEMFQALAERRPAETDCRDNRYSMAMVFGALESARTGRKVELA 341 G + + A+ ET DN S+AMVFGA+ESA TGR+V +A Sbjct: 294 GIIRDFMHAIETGTEPETHGADNIKSLAMVFGAIESAETGRRVAIA 339 >ref|NP_356292.1| AGR_L_1005p [Agrobacterium tumefaciens] ref|NP_534841.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||C98194 hypothetical 39.9K protein y4oX [imported] - Agrobacterium tumefaciens (strain C58, Cereon) pir||AG3092 conserved hypothetical protein Atu4363 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAK89077.1| AGR_L_1005p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL45157.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 352 Score = 278 bits (711), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 152/344 (44%), Positives = 201/344 (58%), Gaps = 10/344 (2%) Query: 5 YRVAVAGCGGMANEWISYAVRRPDV----RIVALVDIRLDAAAAMAGKHGLTCPVF-TDI 59 + + GCG MA W+ P++ RI LVD+ + A A+A + LT V TD+ Sbjct: 11 FNAVLCGCGAMAKGWLRAIQSTPEISGAIRIAGLVDLNENTARALAEEFALTDAVIGTDL 70 Query: 60 GEAIEQTGANLVFDVTIPASHYRVASTALTHQCDVFSEKPLAETMEHCNAIVALAERTGK 119 + +T A+++FD+ IP + + V L C V SEKPLA +ME +V LA++ GK Sbjct: 71 RAVLAETKADILFDIVIPQARFAVVEAGLDAGCHVLSEKPLAASMEEAATLVELAKKAGK 130 Query: 120 SHAVMQNRRYDPRIRSLRRLIEAGEIGRIGYIGAGFFLAPHFGGFRDAMESPLLLDMAIH 179 HAV+QNRR+ IR LRR +E G IG + I FFL PHFGGFR+ M++ LLLDMAIH Sbjct: 131 IHAVVQNRRFIAGIRRLRRALEDGVIGDLTAIHCDFFLGPHFGGFREEMKNVLLLDMAIH 190 Query: 180 TFDQARFISGADPVTVYCQEFNPPGSWYAGNASAVCIFEMSDGSVFCYQGSWCAEGAPTS 239 TFD ARF++ P++V+C E NP GSWYA ASA IFE S+ VF Y+GSWCAEG TS Sbjct: 191 TFDAARFVANEKPLSVFCVEKNPAGSWYAHGASANAIFEFSNDVVFTYRGSWCAEGERTS 250 Query: 240 WEATWRIQGDKGTAIWDGEGMPYAEKVTDRSPDGEFIRDHDRVE-GEAADLKETF-HYGC 297 WEA WR+ G KG +WDGE A D D +R V + K+T H Sbjct: 251 WEARWRLIGSKGMILWDGEDNFSASVAGD---DKGLLRGFKTVNVSDVVSEKDTRGHASV 307 Query: 298 LEEMFQALAERRPAETDCRDNRYSMAMVFGALESARTGRKVELA 341 + ++ ET DN S+AMV GA+ESAR G++V +A Sbjct: 308 ILSFLDSIRTGEMPETASFDNINSLAMVIGAIESARLGQRVSIA 351 >gb|EAD22625.1| unknown [environmental sequence] Length = 229 Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 102/229 (44%), Positives = 146/229 (63%), Gaps = 1/229 (0%) Query: 1 MTAQYRVAVAGCGGMANEWISYAVRRPDVRIVALVDIRLDAAAAMAGKH-GLTCPVFTDI 59 M + R + GCGGM+ W + + +V VDI +AA A + + + V TD+ Sbjct: 1 MASPVRTILIGCGGMSRRWTQVSKCSDQIDLVGFVDISAEAARARSQDYTSDSAYVGTDL 60 Query: 60 GEAIEQTGANLVFDVTIPASHYRVASTALTHQCDVFSEKPLAETMEHCNAIVALAERTGK 119 +A+++ + VFD TIP +H VA A + C V SEKP+A++ME+ A A +GK Sbjct: 61 AKALDELAPDAVFDCTIPEAHTDVAIEAFSQGCHVMSEKPMADSMENARRASAAAVNSGK 120 Query: 120 SHAVMQNRRYDPRIRSLRRLIEAGEIGRIGYIGAGFFLAPHFGGFRDAMESPLLLDMAIH 179 ++++QNRRYDP IR L R + IG + + F++ HFGGFRD M+ LLLDMAIH Sbjct: 121 VYSIIQNRRYDPNIRRLSRTLREDTIGDLTTVNCDFYIGAHFGGFRDRMKHVLLLDMAIH 180 Query: 180 TFDQARFISGADPVTVYCQEFNPPGSWYAGNASAVCIFEMSDGSVFCYQ 228 TFD AR I+GADPV+VYC+E+NP GSWY +ASA+ +FEMS+G ++ Y+ Sbjct: 181 TFDAARLITGADPVSVYCKEWNPEGSWYDHHASAIAVFEMSNGIIYTYR 229 >gb|EAE20198.1| unknown [environmental sequence] Length = 199 Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 101/206 (49%), Positives = 131/206 (63%), Gaps = 17/206 (8%) Query: 143 GEIGRIGYIGAGFFLAPHFGGFRDAMESPLLLDMAIHTFDQARFISGADPVTVYCQEFNP 202 G IG + + F+L HFGGFRD M+ LLLDMAIHTFDQAR I+GADPV+VYC+E+NP Sbjct: 1 GAIGELTTVNCDFYLGAHFGGFRDRMKHVLLLDMAIHTFDQARLITGADPVSVYCREWNP 60 Query: 203 PGSWYAGNASAVCIFEMSDGSVFCYQGSWCAEGAPTSWEATWRIQGDKGTAIWDGEGMPY 262 GSWY +ASA+CIFEMSDG +F Y+GSWCAEG TSWE WRI G +G+A WDG Sbjct: 61 AGSWYDHDASAICIFEMSDGLIFTYRGSWCAEGLNTSWECDWRIVGTRGSATWDGGEAIQ 120 Query: 263 AEKVTDRSPDGEFIRD--------HDRVEGEAADLKETFHYGCLEEMFQALAERRPAETD 314 A+ V + +RD DR+ G H G ++E + + + ET Sbjct: 121 AQSVKKANQFHSVMRDVKVPKLTRKDRIGG---------HAGLIDEFIDCVKKEKIPETV 171 Query: 315 CRDNRYSMAMVFGALESARTGRKVEL 340 C DN S+AMVF ++ES++ GR V++ Sbjct: 172 CTDNVKSLAMVFASIESSKKGRMVKI 197 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.136 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 536,569,647 Number of extensions: 22573702 Number of successful extensions: 43985 Number of sequences better than 1.0e-05: 316 Number of HSP's gapped: 44157 Number of HSP's successfully gapped: 316 Length of query: 354 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 227 Effective length of database: 412,420,005 Effective search space: 93619341135 Effective search space used: 93619341135 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)