BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0502.0021.p (113 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_356293.1| AGR_L_1007p [Agrobacterium tumefaciens] >gi|179... 170 8e-42 ref|NP_437576.1| conserved hypothetical protein [Sinorhizobium m... 169 2e-41 ref|NP_103079.1| unknown protein [Mesorhizobium loti MAFF303099]... 155 3e-37 ref|NP_623523.1| Sugar phosphate isomerases/epimerases [Thermoan... 55 7e-07 >ref|NP_356293.1| AGR_L_1007p [Agrobacterium tumefaciens] ref|NP_534840.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||D98194 hypothetical protein AGR_L_1007 [imported] - Agrobacterium tumefaciens (strain C58, Cereon) pir||AF3092 conserved hypothetical protein Atu4362 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAK89078.1| AGR_L_1007p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL45156.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 300 Score = 170 bits (431), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 79/112 (70%), Positives = 92/112 (82%), Gaps = 1/112 (0%) Query: 1 MVALIDPIPQLRKWTDKIFHVHGKDATIAWDIVREYGIHGPQPYVWHRTPGFGDTNWTDV 60 MV LIDP+PQ+RKW DKIFHVHGKDATI WD++RE+GI G + +V+ RTPGFGD+NWTD+ Sbjct: 189 MVYLIDPLPQIRKWADKIFHVHGKDATIRWDVIREHGIFGKEKFVFMRTPGFGDSNWTDI 248 Query: 61 ISILRQGGYXXXXXDIEGWHDPVYRDELEMTGQVHALNYLKHCRGGSFIPNP 112 IS LR G+ DIEGWHDPVYRD LEMTGQVH LNYLK CRGG F+ +P Sbjct: 249 ISELRLAGW-SGSIDIEGWHDPVYRDALEMTGQVHGLNYLKKCRGGDFVVDP 299 >ref|NP_437576.1| conserved hypothetical protein [Sinorhizobium meliloti 1021] pir||D95971 conserved hypothetical protein SMb21596 [imported] - Sinorhizobium meliloti (strain 1021) magaplasmid pSymB emb|CAC49436.1| conserved hypothetical protein [Sinorhizobium meliloti] Length = 300 Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 79/112 (70%), Positives = 92/112 (82%), Gaps = 1/112 (0%) Query: 1 MVALIDPIPQLRKWTDKIFHVHGKDATIAWDIVREYGIHGPQPYVWHRTPGFGDTNWTDV 60 MV LIDP+PQ+RKW KIFHVHGKDATI WD++RE+GI G + +V+ RTPGFGD+NWTD+ Sbjct: 189 MVYLIDPLPQIRKWAPKIFHVHGKDATIRWDVIREHGIFGKEKFVFMRTPGFGDSNWTDI 248 Query: 61 ISILRQGGYXXXXXDIEGWHDPVYRDELEMTGQVHALNYLKHCRGGSFIPNP 112 IS LR G+ DIEGWHDPVYRD LEMTGQVHALNYLK CRGG F+ +P Sbjct: 249 ISELRLAGW-SGSIDIEGWHDPVYRDALEMTGQVHALNYLKGCRGGDFVADP 299 >ref|NP_103079.1| unknown protein [Mesorhizobium loti MAFF303099] dbj|BAB48865.1| unknown protein [Mesorhizobium loti] Length = 302 Score = 155 bits (392), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 74/113 (65%), Positives = 89/113 (78%), Gaps = 2/113 (1%) Query: 1 MVALIDPIPQLRKWTDKIFHVHGKDATIAWDIVREYGIHGPQPYVWHRTPGFGDTNWTDV 60 +V LIDPIPQ+RKW +IFHVHGKDAT+ WD++RE+G+ G P+V RTPGFGD++WT V Sbjct: 190 LVYLIDPIPQIRKWAPRIFHVHGKDATVRWDVIREHGVFGRLPFVQMRTPGFGDSDWTRV 249 Query: 61 ISILRQGGYXXXXXDIEGWHDPVYRDELEMTGQVHALNYLKHCRGG-SFIPNP 112 IS LR GY DIEGWHDPVYRD+LE+TGQ AL YLK CRGG S++ NP Sbjct: 250 ISELRLAGY-KGAIDIEGWHDPVYRDDLEITGQARALEYLKQCRGGASYLQNP 301 >ref|NP_623523.1| Sugar phosphate isomerases/epimerases [Thermoanaerobacter tengcongensis] gb|AAM25127.1| Sugar phosphate isomerases/epimerases [Thermoanaerobacter tengcongensis] Length = 304 Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 46/95 (48%), Gaps = 7/95 (7%) Query: 4 LIDPIPQLRKWTDKIFHVHGKDATIAWDIVREYGIHGPQ-----PYVWHRTPGFGDTNWT 58 ID I + ++ D+IFHVH KD I D +R YGI G Q Y +R PG G +W Sbjct: 199 FIDYIEVIPEFKDRIFHVHAKDTEIFEDKLRRYGIFGRQLSPGMGYWRYRMPGMGKVDWE 258 Query: 59 DVISILRQGGYXXXXXDIEGWHDPVYRDELEMTGQ 93 I L++ GY IE DPVY E + Sbjct: 259 RFIKTLKESGY-DGVISIEH-EDPVYEGSEEKVKE 291 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.323 0.145 0.504 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 204,554,900 Number of extensions: 8274709 Number of successful extensions: 10548 Number of sequences better than 1.0e-05: 4 Number of HSP's gapped: 10551 Number of HSP's successfully gapped: 4 Length of query: 113 Length of database: 757,237,578 Length adjustment: 78 Effective length of query: 35 Effective length of database: 545,459,856 Effective search space: 19091094960 Effective search space used: 19091094960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 120 (50.8 bits)