BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0502.0020.p (190 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_103079.1| unknown protein [Mesorhizobium loti MAFF303099]... 140 2e-32 ref|NP_356293.1| AGR_L_1007p [Agrobacterium tumefaciens] >gi|179... 130 1e-29 ref|NP_437576.1| conserved hypothetical protein [Sinorhizobium m... 127 1e-28 ref|NP_623523.1| Sugar phosphate isomerases/epimerases [Thermoan... 56 3e-07 >ref|NP_103079.1| unknown protein [Mesorhizobium loti MAFF303099] dbj|BAB48865.1| unknown protein [Mesorhizobium loti] Length = 302 Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 71/138 (51%), Positives = 93/138 (67%), Gaps = 2/138 (1%) Query: 8 SLRIGTLVGA--PDAVRVIPQIVKHGFESFSLTFWQTTGATDLAETAARVRELAAEHDFI 65 +RIGT+V A D + QI+ GFES FWQT G DL A +RE + D + Sbjct: 8 DIRIGTMVRANLEDPAAYVRQILPLGFESIQPFFWQTLGGKDLPRLAGEIREAIGDADVV 67 Query: 66 ISSVGIFGNPLTGTGDNADALASWERLIDHAHLFGTDMVSGFTGRLTGQSIDESIPKFAE 125 +SS+G+FGNPL + LA+WE +ID+AHLFG MVSGFTGRL G+ + +S+P+F E Sbjct: 68 VSSLGVFGNPLESGEVDRGVLAAWETVIDNAHLFGASMVSGFTGRLRGKKLTDSLPRFRE 127 Query: 126 VFGELSKRAADKGLRIAF 143 V+G L+KRAADKG+RIAF Sbjct: 128 VWGPLAKRAADKGVRIAF 145 >ref|NP_356293.1| AGR_L_1007p [Agrobacterium tumefaciens] ref|NP_534840.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||D98194 hypothetical protein AGR_L_1007 [imported] - Agrobacterium tumefaciens (strain C58, Cereon) pir||AF3092 conserved hypothetical protein Atu4362 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAK89078.1| AGR_L_1007p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL45156.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 300 Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 67/138 (48%), Positives = 89/138 (64%), Gaps = 2/138 (1%) Query: 8 SLRIGTLVGAP--DAVRVIPQIVKHGFESFSLTFWQTTGATDLAETAARVRELAAEHDFI 65 S+RIGT+V A A I QI GFESF FWQTT DLA+ R E + D Sbjct: 7 SIRIGTMVSASKGQAAERIGQIADLGFESFEPFFWQTTNGQDLADLGKRCLEAIGDRDIT 66 Query: 66 ISSVGIFGNPLTGTGDNADALASWERLIDHAHLFGTDMVSGFTGRLTGQSIDESIPKFAE 125 I ++G+FGNPL T + + L W+ ID+AH FG V+GFTGRL G+ + ES+P++ E Sbjct: 67 IGTLGMFGNPLEETEIDLETLQGWKDCIDNAHHFGATCVAGFTGRLRGKPLPESLPRYKE 126 Query: 126 VFGELSKRAADKGLRIAF 143 ++ EL+KRAADKG++IAF Sbjct: 127 IWSELAKRAADKGVKIAF 144 >ref|NP_437576.1| conserved hypothetical protein [Sinorhizobium meliloti 1021] pir||D95971 conserved hypothetical protein SMb21596 [imported] - Sinorhizobium meliloti (strain 1021) magaplasmid pSymB emb|CAC49436.1| conserved hypothetical protein [Sinorhizobium meliloti] Length = 300 Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 63/138 (45%), Positives = 92/138 (66%), Gaps = 2/138 (1%) Query: 8 SLRIGTLVGAP--DAVRVIPQIVKHGFESFSLTFWQTTGATDLAETAARVRELAAEHDFI 65 S+R+GT+V A +A + I +I GFESF FWQTT DLAE R RE + D Sbjct: 7 SIRVGTMVSATKGEAAKRIGEIADLGFESFEPFFWQTTNGQDLAELGKRCREAIGDRDIT 66 Query: 66 ISSVGIFGNPLTGTGDNADALASWERLIDHAHLFGTDMVSGFTGRLTGQSIDESIPKFAE 125 IS++G+FGNPL T + +L W+ ID+AH FG V+GFTGR+ + + +S+P++ + Sbjct: 67 ISTLGMFGNPLEETDIDLQSLQGWKDCIDNAHHFGATCVAGFTGRIRNRPLTDSLPRYRK 126 Query: 126 VFGELSKRAADKGLRIAF 143 ++ EL++RAADKG++IAF Sbjct: 127 IWRELAQRAADKGVKIAF 144 >ref|NP_623523.1| Sugar phosphate isomerases/epimerases [Thermoanaerobacter tengcongensis] gb|AAM25127.1| Sugar phosphate isomerases/epimerases [Thermoanaerobacter tengcongensis] Length = 304 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 14/162 (8%) Query: 29 KHGFESFSLTFWQTTGATDLAET-----------AARVRELAAEHDFIISSVGIFGNPLT 77 ++GF+S + W D + T A +++ E+ ISS+ + N L Sbjct: 24 ENGFKSLEVACWPKDNTRDYSGTDIDVETLTEEEAEEIKKYFKEYGLTISSLAYYDNNLD 83 Query: 78 GTGDNADALAS-WERLIDHAHLFGTDMVSGFTGRLTGQSIDESIPKFAEVFGELSKRAAD 136 + + + ++ ID A + GTDMV F GR +SI ++ +F VF ++ K A D Sbjct: 84 KDPEKRKFINNHLKKCIDAAKMLGTDMVGTFVGRNIEKSIKDNFDEFERVFTDIIKYAED 143 Query: 137 KGLRIAFXXXXWAGIGRQEIGISPTIRQPGRKCSTLFRRTTS 178 +G++I G Q G+ TI +FRR S Sbjct: 144 RGVKIIIENCPMEGW--QVHGLPGTISFTPELWEEMFRRIPS 183 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.137 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 278,510,685 Number of extensions: 10737330 Number of successful extensions: 22558 Number of sequences better than 1.0e-05: 4 Number of HSP's gapped: 22559 Number of HSP's successfully gapped: 4 Length of query: 190 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 71 Effective length of database: 434,140,797 Effective search space: 30823996587 Effective search space used: 30823996587 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 122 (51.6 bits)