BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0502.0015.p (381 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241576.1| BH0710~unknown conserved protein [Bacillus halo... 534 e-150 ref|NP_630650.1| putative oxidoreductase [Streptomyces coelicolo... 343 4e-93 ref|NP_823001.1| putative oxidoreductase [Streptomyces avermitil... 339 5e-92 gb|EAK31301.1| unknown [environmental sequence] 297 2e-79 ref|NP_870285.1| unknown conserved protein BH0710 [Pirellula sp.... 296 4e-79 >ref|NP_241576.1| BH0710~unknown conserved protein [Bacillus halodurans] pir||F83738 hypothetical protein BH0710 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04429.1| BH0710~unknown conserved protein [Bacillus halodurans] Length = 388 Score = 534 bits (1375), Expect = e-150, Method: Compositional matrix adjust. Identities = 249/346 (71%), Positives = 287/346 (82%), Gaps = 2/346 (0%) Query: 1 MKQLRIGMIGYKFMGKAHSNAYRSLPMFFPKALKPEMAVLCGRNAVDLQEAAARLGWSDT 60 M+ +++GMIGYKFMGKAHS+AYR LPMFFP L+PEM V+CGRN + +AA++ GW + Sbjct: 1 MESIKVGMIGYKFMGKAHSHAYRDLPMFFPDHLRPEMKVICGRNPEGVAQAASQYGWEEY 60 Query: 61 VTDWRELVGRDDIDLIDINAPSDXXXXXXXXXXXXXXHIFCEKPLALTLADSREMLEAAE 120 T+W++L+ RDDIDLIDINAPSD HIFCEKPLALTL DSR MLEA E Sbjct: 61 TTNWKDLIRRDDIDLIDINAPSDVHKEITLAAAQAGKHIFCEKPLALTLQDSRHMLEAVE 120 Query: 121 EAGVMHMVGFNYRFSPAVRLAKRLVESGRLGQIYHFRAWFLQDWILDPEFPLVWRLQKEI 180 AGV HMVGFNYRF+PAV LAK+L+ GRLG IYHFRAWFLQDWI+ P+FPLVWRLQK+I Sbjct: 121 AAGVKHMVGFNYRFTPAVLLAKKLIAEGRLGDIYHFRAWFLQDWIVAPDFPLVWRLQKDI 180 Query: 181 AGSGSHGDLGAHLIDLAHFLVGDMKEVIGMSETFIKERPLAAEMTGLSAKASAG--APRG 238 AGSG+HGDLGAHLID+AHFL+GD+ EVIGM+ETFIKERPL EMTGLS + S P+G Sbjct: 181 AGSGAHGDLGAHLIDMAHFLIGDITEVIGMNETFIKERPLPTEMTGLSGRGSNDHTVPKG 240 Query: 239 PVTVDDATLFLARFANGAIGSFEATRFAAGHRSTNSFEINGSLGSVKFDFERMNELEVYL 298 PVTVDDATLF+ARFANGA+GSFEATRFA GHRSTNSFEINGS GSV FDFER+NEL+VY Sbjct: 241 PVTVDDATLFMARFANGALGSFEATRFATGHRSTNSFEINGSKGSVIFDFERLNELQVYF 300 Query: 299 TSDEEDVQGFRRVLATDPAHDYAEAWWPPGHTIGFEHTFIHEFLEL 344 T D++DVQGFRRVLATD AH Y++ WWP GHTIG+EHTFIHE EL Sbjct: 301 TDDQDDVQGFRRVLATDGAHAYSDRWWPAGHTIGYEHTFIHEIAEL 346 >ref|NP_630650.1| putative oxidoreductase [Streptomyces coelicolor A3(2)] pir||T34927 probable oxidoreductase - Streptomyces coelicolor emb|CAA19628.1| putative oxidoreductase [Streptomyces coelicolor A3(2)] Length = 430 Score = 343 bits (880), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 175/351 (49%), Positives = 235/351 (66%), Gaps = 6/351 (1%) Query: 4 LRIGMIGYKFMGKAHSNAYRSLPMFFPKALKPEMAVLCGRNAVDLQEAAARLGWSDTVTD 63 LR+GM+GY FMG AHS +R+ F L P +A +CGR+A ++ AA R GW+ T TD Sbjct: 44 LRVGMVGYAFMGAAHSQGWRTAGRVFDLPLNPVLAAICGRDADAVRLAADRHGWASTETD 103 Query: 64 WRELVGRDDIDLIDINAPSDXXXXXXXXXXXXXXHIFCEKPLALTLADSREMLEAAEEA- 122 WR LV RDDIDL+DI P D H+ CEKPLA T+ +++ M AAEEA Sbjct: 104 WRTLVERDDIDLVDICTPGDSHSEIALAALAAGKHVLCEKPLANTVEEAQAMTRAAEEAA 163 Query: 123 --GVMHMVGFNYRFSPAVRLAKRLVESGRLGQIYHFRAWFLQDWILDPEFPLVWRLQKEI 180 G + MVGFNYR PA LA+R+V GR+G++ H R +LQDW++DP+ PL WRL+KE+ Sbjct: 164 ARGQLAMVGFNYRRVPATALARRMVAEGRVGRLRHLRVTYLQDWLVDPKAPLTWRLRKEL 223 Query: 181 AGSGSHGDLGAHLIDLAHFLVGD-MKEVIGMSETFIKERPL-AAEMTGLSAKASAGAPRG 238 AGSG+ GDLGAH++DLA +L G+ + V ++ETF++ERPL A GLSA ++ G G Sbjct: 224 AGSGALGDLGAHIVDLAQYLSGERIAGVSALTETFVRERPLPAGAPRGLSAGSADGV-TG 282 Query: 239 PVTVDDATLFLARFANGAIGSFEATRFAAGHRSTNSFEINGSLGSVKFDFERMNELEVYL 298 VTVDDA +F R +GA+ SFEATR+A G ++ E+NG GS+ FD ER+NEL + Sbjct: 283 QVTVDDAAVFTGRLTSGALVSFEATRYATGRKNALRIELNGERGSLAFDLERLNELSYHD 342 Query: 299 TSDEEDVQGFRRVLATDPAHDYAEAWWPPGHTIGFEHTFIHEFLELASAGA 349 ++ + GFRR+L T+P H Y EAWWPPGH +G+EHTF+H+ +L A A Sbjct: 343 GTEPGEHAGFRRILVTEPEHPYLEAWWPPGHGLGYEHTFVHQARDLVHAVA 393 >ref|NP_823001.1| putative oxidoreductase [Streptomyces avermitilis MA-4680] dbj|BAC69536.1| putative oxidoreductase [Streptomyces avermitilis MA-4680] Length = 402 Score = 339 bits (870), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 169/348 (48%), Positives = 228/348 (65%), Gaps = 5/348 (1%) Query: 4 LRIGMIGYKFMGKAHSNAYRSLPMFFPKALKPEMAVLCGRNAVDLQEAAARLGWSDTVTD 63 L IGM+GY FMG AHS +R++ F +P +A +CGR+ ++ A R GW+ TD Sbjct: 17 LGIGMVGYAFMGAAHSQGWRTVGRVFDLPSRPVLAAVCGRDGQAVRAMAERHGWAAAETD 76 Query: 64 WRELVGRDDIDLIDINAPSDXXXXXXXXXXXXXXHIFCEKPLALTLADSREMLEAAE--- 120 WR L+ RDD+D++DI P D H+ CEKPLA T+ ++ M A E Sbjct: 77 WRALIARDDVDVVDICTPGDSHAEIAVAALAAGKHVLCEKPLANTVEEAEAMAAAGEQAY 136 Query: 121 EAGVMHMVGFNYRFSPAVRLAKRLVESGRLGQIYHFRAWFLQDWILDPEFPLVWRLQKEI 180 G + MVGFNYR PA LA+R+V GRLG + H R +LQDW++DPEFPL WRL++E+ Sbjct: 137 RQGRLTMVGFNYRRLPATSLARRMVREGRLGTLRHVRVTYLQDWLVDPEFPLTWRLRREV 196 Query: 181 AGSGSHGDLGAHLIDLAHFLVGD-MKEVIGMSETFIKERPLAAEMTGLSAKASAGAPRGP 239 AGSG+ GDLGAH++DLA +L G+ + V ++ETF++ERPL TG A SAG G Sbjct: 197 AGSGALGDLGAHIVDLAQYLAGEPLAGVSALTETFVRERPLPGGTTGGLAAVSAGG-LGT 255 Query: 240 VTVDDATLFLARFANGAIGSFEATRFAAGHRSTNSFEINGSLGSVKFDFERMNELEVYLT 299 VTVDDA LF ARFA+GA+ +FEA+RFA G +++ E+NG GS+ FD ER+NEL + Sbjct: 256 VTVDDAALFTARFASGALATFEASRFATGRKNSLRIELNGERGSLAFDLERLNELAYHDH 315 Query: 300 SDEEDVQGFRRVLATDPAHDYAEAWWPPGHTIGFEHTFIHEFLELASA 347 ++ GFRR+L T+P H Y EAWWPPGH +G+EHTF+H+ +L A Sbjct: 316 TEPLAHAGFRRILVTEPDHPYLEAWWPPGHGLGYEHTFVHQARDLVHA 363 >gb|EAK31301.1| unknown [environmental sequence] Length = 382 Score = 297 bits (761), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 150/343 (43%), Positives = 210/343 (61%), Gaps = 16/343 (4%) Query: 2 KQLRIGMIGYKFMGKAHSNAYRSLPMFFPK-ALKPEMAVLCGRNAVDLQEAAARLGWSDT 60 K++R+GMIGY FMGKAHSNAYR FFP +PE+ + C RN + A G+ Sbjct: 3 KKIRVGMIGYGFMGKAHSNAYRQASKFFPDLPYEPELKIFCARNKERADQFANNWGYDQV 62 Query: 61 VTDWRELVGRDDIDLIDINAPSDXXXXXXXXXXXXXXHIFCEKPLALTLADSREMLEAAE 120 TDWR++V DD+DLIDI AP++ + EKPL++ +++ EM+ A E Sbjct: 63 ETDWRKVVESDDVDLIDICAPNNMHKEIAVAAAQNGKWVLTEKPLSMNVSEGEEMVSAVE 122 Query: 121 EAGVMHMVGFNYRFSPAVRLAKRLVESGRLGQIYHFRAWFLQDWILDPEFPL----VWRL 176 +AGV +MV +NYR PAV LAK +++ G LG+I+H+RA FLQDW + + P +WRL Sbjct: 123 KAGVPNMVWYNYRRIPAVTLAKNIIDKGSLGKIFHYRANFLQDWTISSDLPQGGEGLWRL 182 Query: 177 QKEIAGSGSHGDLGAHLIDLAHFLVGDMKEVIGMSETFIKERPLAAEMTGLSAKASAGAP 236 ++AGSG GDL AH ID A +L G + EV M+ETFIKER +S K Sbjct: 183 DVDVAGSGVTGDLLAHCIDTAMWLNGSIVEVTAMTETFIKER-----QHNISGKVE---- 233 Query: 237 RGPVTVDDATLFLARFANGAIGSFEATRFAAGHRSTNSFEINGSLGSVKFDFERMNELEV 296 V +DDA FLA+F+NG++ FE+TR+A GH++ +FEING S+ +D ++ L+ Sbjct: 234 --KVGIDDACAFLAKFSNGSLAIFESTRYARGHKALYTFEINGEKSSIFWDLHDLHRLKY 291 Query: 297 YLTSDEEDVQGFRRVLATDPAHDYAEAWWPPGHTIGFEHTFIH 339 + +DE V+G+R + TD Y + WW PG IGFEH+F H Sbjct: 292 FDHADESIVRGWRDIHVTDGDQPYMDKWWVPGLNIGFEHSFTH 334 >ref|NP_870285.1| unknown conserved protein BH0710 [Pirellula sp. 1] emb|CAD77360.1| unknown conserved protein BH0710 [Pirellula sp.] Length = 377 Score = 296 bits (759), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 146/344 (42%), Positives = 206/344 (59%), Gaps = 15/344 (4%) Query: 1 MKQLRIGMIGYKFMGKAHSNAYRSLPMFFPKALKPEMAVLCGRNAVDLQEAAARLGWSDT 60 MK L IG+IGY FMG+ H+N YR P FF P + +C RN + A + G+ Sbjct: 1 MKPLNIGLIGYGFMGRTHTNGYRQAPRFFDLEYHPVLKAVCARNEEKAKAFAEQQGYESV 60 Query: 61 VTDWRELVGRDDIDLIDINAPSDXXXXXXXXXXXXXXHIFCEKPLALTLADSREMLEAAE 120 TDWR+L+ RDDID +D+ P++ + CEKPLA+ A+ EM EA E Sbjct: 61 ETDWRKLLERDDIDAVDVCTPNNLHKEISIAAAEAGKMVLCEKPLAMNTAEGIEMCEAVE 120 Query: 121 EAGVMHMVGFNYRFSPAVRLAKRLVESGRLGQIYHFRAWFLQDWILDPEFP----LVWRL 176 +AGV +MV +NYR PAV LAK+L++ GRLG+I+H+RA FLQDW ++ + P WRL Sbjct: 121 KAGVRNMVWYNYRRVPAVTLAKQLIDEGRLGKIFHYRANFLQDWTINADVPQGGAATWRL 180 Query: 177 QKEIAGSGSHGDLGAHLIDLAHFLVGDMKEVIGMSETFIKERPLAAEMTGLSAKASAGAP 236 E AGSG GDL AH ID A +L G +++V ++ETF+KER S Sbjct: 181 DAEAAGSGVTGDLLAHCIDTALWLNGSIQDVSAVTETFVKERV-----------HSETGE 229 Query: 237 RGPVTVDDATLFLARFANGAIGSFEATRFAAGHRSTNSFEINGSLGSVKFDFERMNELEV 296 + PV +DDA F F NG++G FE+TR+A GH++ + EING GS+++D ++ LE Sbjct: 230 KTPVKIDDACAFHCHFGNGSLGLFESTRYARGHKALYTLEINGENGSLRWDLHDLHRLEF 289 Query: 297 YLTSDEEDVQGFRRVLATDPAHDYAEAWWPPGHTIGFEHTFIHE 340 + +D+ V+G+R + +D Y WW PG IG+EHTF+H+ Sbjct: 290 FDHNDDSIVRGWRSIHVSDGDQPYMANWWVPGLQIGYEHTFVHQ 333 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.137 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 539,373,565 Number of extensions: 21274911 Number of successful extensions: 44982 Number of sequences better than 1.0e-05: 678 Number of HSP's gapped: 44647 Number of HSP's successfully gapped: 678 Length of query: 381 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 254 Effective length of database: 412,420,005 Effective search space: 104754681270 Effective search space used: 104754681270 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)