BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0502.0004.p
         (206 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_718080.1| transcriptional regulator, TetR family [Shewane...    58   1e-07
gb|EAK69414.1| unknown [environmental sequence]                        58   2e-07
ref|NP_384671.1| PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Sinor...    58   2e-07
ref|NP_518659.1| PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Ralst...    55   8e-07
gb|EAI69780.1| unknown [environmental sequence]                        55   9e-07

>ref|NP_718080.1| transcriptional regulator, TetR family [Shewanella oneidensis MR-1]
 gb|AAN55524.1| transcriptional regulator, TetR family [Shewanella oneidensis MR-1]
          Length = 239

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 13  KDTKQTILEATVDLIRAYGFSCATMRNIAAKAETNLALVNYHYGSKEKLLADAVRVLLST 72
            DTK  IL+A   L    GFS  ++R I +KAE NLA VNYH+GSK++L    +R +L+ 
Sbjct: 31  SDTKTRILDAAEKLFAERGFSETSLRLITSKAEVNLASVNYHFGSKKEL----IRAVLAR 86

Query: 73  FDDAF------KVLEDDTVPPRERLKEFFIRYIEEL 102
           + D F       +    T P +  L+E F   ++ L
Sbjct: 87  YLDVFMPAASTAIKRLHTAPSQASLEEIFSALVDPL 122


>gb|EAK69414.1| unknown [environmental sequence]
          Length = 238

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 13  KDTKQTILEATVDLIRAYGFSCATMRNIAAKAETNLALVNYHYGSKEKLLADAVRVLLST 72
            DTK  IL+A   L    GFS  ++R I +KAE NLA VNYH+GSK++L    +R +L+ 
Sbjct: 31  SDTKTRILDAAEKLFAERGFSETSLRLITSKAEVNLASVNYHFGSKKEL----IRAVLAR 86

Query: 73  FDDAF------KVLEDDTVPPRERLKEFFIRYIEEL 102
           + D F       +    T P +  L+E F   ++ L
Sbjct: 87  YLDVFMPAASTAIKRLHTAPTQASLEEIFSALVDPL 122


>ref|NP_384671.1| PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Sinorhizobium meliloti]
 emb|CAC45137.1| PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Sinorhizobium meliloti]
          Length = 204

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 56/95 (58%), Gaps = 4/95 (4%)

Query: 1  MNRNDSIADHADKDTKQTILEATVDLIRAYGFSCATMRNIAAKAETNLALVNYHYGSKEK 60
          MNR  S     + + +Q ++EAT+D I  +G   AT+R IA +A     LV +++ SK++
Sbjct: 1  MNRR-SFYRAPEGERRQELIEATLDCISEFGLKGATVRQIALRAGVTAGLVRHYFESKDQ 59

Query: 61 LLADAVRVLLSTFDDAFKVLEDDTVPPRERLKEFF 95
          ++A+A R ++++  +  K +E D   P  RLK+F 
Sbjct: 60 MVAEAYRAVIASLTEKAKNVEGD---PATRLKDFI 91


>ref|NP_518659.1| PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
 emb|CAD14066.1| PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
          Length = 340

 Score = 55.5 bits (132), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 36/56 (64%)

Query: 7  IADHADKDTKQTILEATVDLIRAYGFSCATMRNIAAKAETNLALVNYHYGSKEKLL 62
          +A     DTK  ILEAT  L   +G+   ++R I A+A+ NLA VNYH+GSKE L+
Sbjct: 1  MARPGAGDTKNRILEATELLFIEFGYEAMSLRQITARAKVNLAAVNYHFGSKEALM 56


>gb|EAI69780.1| unknown [environmental sequence]
          Length = 238

 Score = 55.1 bits (131), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 4/65 (6%)

Query: 13 KDTKQTILEATVDLIRAYGFSCATMRNIAAKAETNLALVNYHYGSKEKLLADAVRVLLST 72
           DTK  IL+A   L    GFS  ++R I +KAE NLA VNYH+GSK++L    +R +L+ 
Sbjct: 31 SDTKTRILDAAEKLFAERGFSETSLRLITSKAEVNLASVNYHFGSKKEL----IRAVLAR 86

Query: 73 FDDAF 77
          + D F
Sbjct: 87 YLDVF 91


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.322    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 288,490,851
Number of extensions: 10463652
Number of successful extensions: 32204
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 32254
Number of HSP's successfully gapped: 15
Length of query: 206
Length of database: 757,237,578
Length adjustment: 120
Effective length of query: 86
Effective length of database: 431,425,698
Effective search space: 37102610028
Effective search space used: 37102610028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)