BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0502.0002.p (254 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAE06408.1| unknown [environmental sequence] 199 7e-50 ref|NP_625679.1| putative D-alanyl-D-alanine dipeptidase (putati... 190 2e-47 gb|AAF42763.1| Svh [Salmonella enteritidis] 187 2e-46 ref|NP_460558.1| periplasmic dipeptidase precursor [Salmonella t... 187 3e-46 ref|NP_455898.1| D-alanyl-D-alanine dipeptidase [Salmonella ente... 186 5e-46 >gb|EAE06408.1| unknown [environmental sequence] Length = 225 Score = 199 bits (505), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 122/182 (67%) Query: 68 QYEIRYFSENNFTGSRVDGYKAPLAIFSQVGAKALKAVSDDLARKGYILRIYDAYRPQKA 127 + E+RYFSE NF G ++ GY++ AI ++ A AL D + GY ++I+DAYRPQ A Sbjct: 39 ELELRYFSEQNFVGQQIPGYESNKAILTRKAANALLLAQRDFIQLGYKIKIFDAYRPQTA 98 Query: 128 VDDFVAWSQDAADIKMKQQYYPKLDKRNLFKLGFIAKKSGHTRGGTIDLTLAYAKTGNLV 187 VD FV W+ D D+K K +YYP ++K NLF G+IA +SGH+RG +DLTL ++G + Sbjct: 99 VDFFVNWASDLQDLKNKSEYYPNVEKSNLFSEGYIAARSGHSRGSAVDLTLVDLESGQEI 158 Query: 188 DMGSPYDFFGEISYYNTSLISTTQHANRKILKDAMVKHGFKPYSKEWWHFTLIKEPFPSQ 247 DMGSP+DFF IS+ + ++ Q ANR++L M KHGF +EWWHF L+ EPFP+ Sbjct: 159 DMGSPWDFFDPISWPTSEKVTEQQRANRRLLAATMQKHGFASIKEEWWHFYLVDEPFPNT 218 Query: 248 YF 249 YF Sbjct: 219 YF 220 >ref|NP_625679.1| putative D-alanyl-D-alanine dipeptidase (putative secreted protein) [Streptomyces coelicolor A3(2)] emb|CAB88892.1| putative D-alanyl-D-alanine dipeptidase (putative secreted protein) [Streptomyces coelicolor A3(2)] Length = 274 Score = 190 bits (483), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 97/224 (43%), Positives = 128/224 (57%), Gaps = 24/224 (10%) Query: 54 PKGFVYLDEIIPTAQYEIRYFSENNFTGSRVDGYKAPLAIFSQVGAKALKAVSDDLARKG 113 P+ FV L + PT E+RY + +NF G RVDGY+ PL I ++ A+AL L R+G Sbjct: 42 PEDFVALRGVDPTIIEEMRYVTAHNFVGERVDGYRQPLCILTRPAAEALHLAQTRLLRQG 101 Query: 114 YILRIYDAYRPQKAVDDFVAWSQDAADIKMKQQYYPKLDKRNLFKLGFIAKKSGHTRGGT 173 Y L++YD YRPQ+AVD FV W++D D MK ++YP +DK LF G+IA+KSGH+RG T Sbjct: 102 YSLKVYDCYRPQRAVDHFVRWAEDLDDQDMKAEFYPDVDKTRLFADGYIAEKSGHSRGST 161 Query: 174 IDLTL-------------------AYAKTG-----NLVDMGSPYDFFGEISYYNTSLIST 209 +DLTL +A G N VDMG+ YD F S+ I Sbjct: 162 VDLTLVRLPAKPTRPYHPGQPLVPCFAPKGERFPDNSVDMGTGYDCFDTRSHTLDPRIEG 221 Query: 210 TQHANRKILKDAMVKHGFKPYSKEWWHFTLIKEPFPSQYFNFDV 253 Q ANR +LKD + + G +EWWHFT EP+P YF+F V Sbjct: 222 VQRANRLLLKDTLEEAGLVNLPEEWWHFTYKPEPYPDTYFDFPV 265 >gb|AAF42763.1| Svh [Salmonella enteritidis] Length = 256 Score = 187 bits (474), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 133/224 (59%), Gaps = 23/224 (10%) Query: 54 PKGFVYLDEIIPTAQYEIRYFSENNFTGSRVDGYKAPLAIFSQVGAKALKAVSDDLARKG 113 PK FV + + P Q ++RYFS +NF G + GY AP+ + ++ A A+K V+D L G Sbjct: 30 PKDFVDITTVAPDVQVDMRYFSSHNFIGRPIKGYNAPVCLLTRPAANAVKQVADRLRPFG 89 Query: 114 YILRIYDAYRPQKAVDDFVAWSQDAADIKMKQQYYPKLDKRNLFKLGFIAKKSGHTRGGT 173 L+IYD YRPQ AV+DF+AW++D + +MK ++YP+++K LF+ G++A +SGH+RG T Sbjct: 90 LTLKIYDCYRPQSAVNDFIAWAKDPSQNQMKNEFYPQVEKNRLFEEGYLAARSGHSRGST 149 Query: 174 IDLTL-----------------------AYAKTGNLVDMGSPYDFFGEISYYNTSLISTT 210 +DLT+ A N +D G+ +D F +S+ + +++ Sbjct: 150 LDLTIVPLDSKIPIYDPGRPLVNCTASAAQRSPDNSLDFGTGFDCFSPLSHPDNVMLTAQ 209 Query: 211 QHANRKILKDAMVKHGFKPYSKEWWHFTLIKEPFPSQYFNFDVE 254 Q ANR +L+ M GF P EWWHF+L EP+P+ +F+F V+ Sbjct: 210 QRANRLLLQTLMRDAGFTPLDTEWWHFSLTHEPYPNTWFDFPVK 253 >ref|NP_460558.1| periplasmic dipeptidase precursor [Salmonella typhimurium LT2] gb|AAD25390.1| D-alanyl-D-alanine dipeptidase PcgL precursor [Salmonella typhimurium] gb|AAL20517.1| Periplasmic dipeptidase [Salmonella typhimurium LT2] Length = 256 Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 133/224 (59%), Gaps = 23/224 (10%) Query: 54 PKGFVYLDEIIPTAQYEIRYFSENNFTGSRVDGYKAPLAIFSQVGAKALKAVSDDLARKG 113 PK FV + + P Q ++RYFS +NF G + GY AP+ + ++ A A+K V+D L G Sbjct: 30 PKDFVDITTVAPDVQVDMRYFSSHNFIGRPIKGYNAPVCLLTRPAANAVKQVADRLRPFG 89 Query: 114 YILRIYDAYRPQKAVDDFVAWSQDAADIKMKQQYYPKLDKRNLFKLGFIAKKSGHTRGGT 173 L+IYD YRPQ AV+DF+AW++D + +MK ++YP+++K LF+ G++A +SGH+RG T Sbjct: 90 LTLKIYDCYRPQSAVNDFIAWAKDPSQNQMKNEFYPQVEKNRLFEEGYLAARSGHSRGST 149 Query: 174 IDLTL-----------------------AYAKTGNLVDMGSPYDFFGEISYYNTSLISTT 210 +DLT+ A N +D G+ +D F +S+ + +++ Sbjct: 150 LDLTIVPLDSKIPIYDPGRPLVNCTASAAQRSPDNSLDFGTGFDCFSPLSHPDNVILTAQ 209 Query: 211 QHANRKILKDAMVKHGFKPYSKEWWHFTLIKEPFPSQYFNFDVE 254 Q ANR +L+ M GF P EWWHF+L EP+P+ +F+F V+ Sbjct: 210 QRANRLLLQTLMRDAGFTPLDTEWWHFSLTHEPYPNTWFDFPVK 253 >ref|NP_455898.1| D-alanyl-D-alanine dipeptidase [Salmonella enterica subsp. enterica serovar Typhi] ref|NP_805294.1| D-alanyl-D-alanine dipeptidase [Salmonella enterica subsp. enterica serovar Typhi Ty2] pir||AE0669 D-alanyl-D-alanine dipeptidase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) emb|CAD01726.1| D-alanyl-D-alanine dipeptidase [Salmonella enterica subsp. enterica serovar Typhi] gb|AAO69143.1| D-alanyl-D-alanine dipeptidase [Salmonella enterica subsp. enterica serovar Typhi Ty2] Length = 256 Score = 186 bits (472), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 133/224 (59%), Gaps = 23/224 (10%) Query: 54 PKGFVYLDEIIPTAQYEIRYFSENNFTGSRVDGYKAPLAIFSQVGAKALKAVSDDLARKG 113 PK FV + + P Q ++RYF+ +NF G + GY AP+ + ++ A A+K V+D L G Sbjct: 30 PKDFVDITTVAPDVQVDMRYFTSHNFIGRPIKGYNAPVCLLTRPAANAVKQVADRLRPFG 89 Query: 114 YILRIYDAYRPQKAVDDFVAWSQDAADIKMKQQYYPKLDKRNLFKLGFIAKKSGHTRGGT 173 L+IYD YRPQ AV+DF+AW++D + +MK ++YP+++K LF+ G++A +SGH+RG T Sbjct: 90 LTLKIYDCYRPQSAVNDFIAWAKDPSQNQMKNEFYPQVEKNRLFEEGYLAARSGHSRGST 149 Query: 174 IDLTL-----------------------AYAKTGNLVDMGSPYDFFGEISYYNTSLISTT 210 +DLT+ A N +D G+ +D F +S+ + +++ Sbjct: 150 LDLTIVPLDSKIPIYHPGRPLVNCTASAAQRSPDNSLDFGTGFDCFSPLSHPDNVMLTAQ 209 Query: 211 QHANRKILKDAMVKHGFKPYSKEWWHFTLIKEPFPSQYFNFDVE 254 Q ANR +L+ M GF P EWWHF+L EP+P+ +F+F V+ Sbjct: 210 QRANRLLLQTLMRDAGFTPLDTEWWHFSLTHEPYPNTWFDFPVK 253 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 388,880,734 Number of extensions: 16174621 Number of successful extensions: 35628 Number of sequences better than 1.0e-05: 90 Number of HSP's gapped: 35585 Number of HSP's successfully gapped: 90 Length of query: 254 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 131 Effective length of database: 423,280,401 Effective search space: 55449732531 Effective search space used: 55449732531 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)