BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0500.0018.p
         (129 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB47524.1| mercuric resistance operon regulatory protein [Sy...    80   2e-14
gb|EAK56232.1| unknown [environmental sequence]                        78   6e-14
gb|EAH94849.1| unknown [environmental sequence]                        75   5e-13
ref|ZP_00125312.1| COG0789: Predicted transcriptional regulators...    74   7e-13
ref|NP_629575.1| putative MerR-family transcriptional regulator ...    74   1e-12

>gb|AAB47524.1| mercuric resistance operon regulatory protein [Synechococcus sp.
           PCC 7942]
          Length = 144

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 72/122 (59%), Gaps = 3/122 (2%)

Query: 5   MRIGELTERAGVTQRTVRYYESIGLLPSGEREGNGHHYYTEETVARLRKIDQLKKLGLSL 64
           ++IGE+ ++ GV   T+RYYE++ L+    R  NG+ YY  +T+ +L+ I Q + LG SL
Sbjct: 2   LKIGEIAKQVGVAVGTIRYYETLQLIQPSTRGENGYRYYKPQTIQQLQFIRQAQTLGFSL 61

Query: 65  EEIGDVIELYFTDPSGVQPKRKVLGLLRRHLADTDKKLDALGQFRDDLQSHIERFEQWLE 124
           EEI  ++ +Y     G  P   V  LL + +A  ++KL  +  F+  L+S+ +R++Q   
Sbjct: 62  EEIRQILTVY---AEGTPPCSLVQTLLNQKIASLEEKLQQIQTFKAQLESYRDRWQQTHP 118

Query: 125 TN 126
           +N
Sbjct: 119 SN 120


>gb|EAK56232.1| unknown [environmental sequence]
          Length = 124

 Score = 78.2 bits (191), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 67/117 (57%), Gaps = 5/117 (4%)

Query: 5   MRIGELTERAGVTQRTVRYYESIGLLPSGER--EGNGHHYYTEETVARLRKIDQLKKLGL 62
           MRIGEL +RAGV+  TVRYYE +GLL    R    N + +Y+E ++ R+R I   K LG 
Sbjct: 1   MRIGELCKRAGVSHDTVRYYERMGLLDKATRPHATNTYKHYSERSLQRIRLIIHAKALGF 60

Query: 63  SLEEIGDVIELYFTDPSGVQPKRKVLGLLRRHLADTDKKLDALGQFRDDLQSHIERF 119
           +L EIGDVI ++ +   GV  K   +  L+  L + D+K  AL   R  L + + + 
Sbjct: 61  TLTEIGDVIHVWDSPTFGVAQK---VACLQAKLTEIDEKSRALVMLRAGLLNALAKV 114


>gb|EAH94849.1| unknown [environmental sequence]
          Length = 342

 Score = 75.1 bits (183), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 4   RMRIGELTERAGVTQRTVRYYESIGLLPSGEREGNGHHYYTEETVARLRKIDQLKKLGLS 63
           R+++GEL +R+G+T RT+ +Y +IGLL    R  NG+  Y    +ARL +I  L++ GLS
Sbjct: 2   RLKVGELAKRSGLTVRTLHHYHAIGLLTPSARADNGYRLYDRHDIARLHQIQALRRFGLS 61

Query: 64  LEEIGDVIELYFTDPSGVQPKRKVLGLLRRHLADTDKKLDALGQFRDDLQSHIE-RFEQW 122
           L EIGD   L   D   V+   K + LL R LA T +  + L      L +  E     W
Sbjct: 62  LTEIGD--HLNQPDTPLVEIVAKQIALLDRQLAQTAQLRERLVNLHAQLAAGAEPELADW 119

Query: 123 LET 125
           L T
Sbjct: 120 LTT 122


>ref|ZP_00125312.1| COG0789: Predicted transcriptional regulators [Pseudomonas syringae
           pv. syringae B728a]
          Length = 132

 Score = 74.3 bits (181), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 66/113 (58%), Gaps = 3/113 (2%)

Query: 5   MRIGELTERAGVTQRTVRYYESIGLLPSGEREGNGHHYYTEETVARLRKIDQLKKLGLSL 64
           M IG+  + +G++ + +RYYESIGLL +  R  +G+  Y+ + +  L  I + + LG SL
Sbjct: 1   MNIGQAAKNSGLSAKMIRYYESIGLLQAAHRSESGYRLYSADDLHTLAFIKRSRDLGFSL 60

Query: 65  EEIGDVIELYFTDPSGVQPKRKVLGLLRRHLADTDKKLDALGQFRDDLQSHIE 117
           EE+G ++ L+       +    V  L R+H+A+ ++K+D L   RD LQ  +E
Sbjct: 61  EEVGKLLTLW---QDRQRASADVKALARQHIAELNRKIDELASLRDTLQELVE 110


>ref|NP_629575.1| putative MerR-family transcriptional regulator [Streptomyces
           coelicolor A3(2)]
 emb|CAB72413.1| putative MerR-family transcriptional regulator [Streptomyces
           coelicolor A3(2)]
          Length = 132

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 65/117 (55%), Gaps = 3/117 (2%)

Query: 5   MRIGELTERAGVTQRTVRYYESIGLLPSGEREGNGHHYYTEETVARLRKIDQLKKLGLSL 64
           MRIGEL  RAG T RT+RYYES GLLP+  R GNG+  Y E+ +  LR+I  L+  G  L
Sbjct: 1   MRIGELAARAGTTTRTLRYYESRGLLPA-RRGGNGYRTYDEDDLKLLRQIRTLQDFGFDL 59

Query: 65  EEIGDVIE-LYFTDPSGVQPKRKVLGLLRRHLADTDKKLDALGQFRDDLQSHIERFE 120
           EE    +E L    P G      ++ + RR LA+ D  ++ L   R  + + + R E
Sbjct: 60  EETRPFVECLRAGHPEGDSCPASLV-VYRRKLAELDTLIEQLTSVRAQVAAQLTRAE 115


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.138    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 199,960,500
Number of extensions: 8067200
Number of successful extensions: 23905
Number of sequences better than 1.0e-05: 338
Number of HSP's gapped: 24017
Number of HSP's successfully gapped: 338
Length of query: 129
Length of database: 757,237,578
Length adjustment: 92
Effective length of query: 37
Effective length of database: 507,448,470
Effective search space: 18775593390
Effective search space used: 18775593390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)