BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0500.0015.p (216 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_847084.1| conserved hypothetical protein [Bacillus anthra... 135 8e-31 ref|NP_658665.1| DUF161, Uncharacterized BCR, YitT family COG128... 133 3e-30 ref|NP_981062.1| conserved hypothetical protein [Bacillus cereus... 130 2e-29 ref|NP_834339.1| hypothetical Membrane Spanning Protein [Bacillu... 130 2e-29 ref|NP_242544.1| BH1678~unknown conserved protein [Bacillus halo... 97 2e-19 >ref|NP_847084.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP28570.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 220 Score = 135 bits (339), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 79/206 (38%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 9 IILSGTLLLAFTYYHINYQNHLTEGGFVGLSLLGKYVLGISPSLTILILDIPVLLIAMIF 68 ++L G+ +LA YHI++QNHLTEGGFVG++L + ISPS++ +I+DIP++L+ F Sbjct: 15 MVLIGSFILAAALYHIHFQNHLTEGGFVGIALFIQNFYDISPSISTVIMDIPIILLCASF 74 Query: 69 KGRAFVLNTFISVGAFTVFYSLMERYSGWVINLQDNLPLAALLSGVLTXXXXXXXXXXXX 128 GR V +F+ +F VFYSLME YS + I+L +NL +AA++ G L Sbjct: 75 LGRKMVGYSFLGSISFGVFYSLMENYSPFTIDLSNNLFIAAVVGGALAGIGLGFILRFGG 134 Query: 129 XXXXDDILSLLISEWKGIKVGTVFILMDVIVLALSLFYMPLKETLYTVMAVVVAGYVITF 188 DDIL++++S+ +G +F + D IVLALSL+Y+ E +T++++ V + Sbjct: 135 ATGGDDILTIVLSKKTRFTIGQIFFVFDAIVLALSLYYLNWTEIAFTILSIAVQAKTLDL 194 Query: 189 TTSLGRPKLGKAPTIQPT---LSKPH 211 + PK KA QP +SK H Sbjct: 195 ---IYYPKTEKAEEKQPVSIPMSKKH 217 >ref|NP_658665.1| DUF161, Uncharacterized BCR, YitT family COG1284 [Bacillus anthracis A2012] Length = 206 Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 9 IILSGTLLLAFTYYHINYQNHLTEGGFVGLSLLGKYVLGISPSLTILILDIPVLLIAMIF 68 ++L G+ +LA YHI++QNHLTEGGF G++L + ISPS++ +I+DIP++L+ F Sbjct: 1 MVLIGSFILAAALYHIHFQNHLTEGGFXGIALFIQNFYDISPSISTVIMDIPIILLCASF 60 Query: 69 KGRAFVLNTFISVGAFTVFYSLMERYSGWVINLQDNLPLAALLSGVLTXXXXXXXXXXXX 128 GR V +F+ +F VFYSLME YS + I+L +NL +AA++ G L Sbjct: 61 LGRKMVGYSFLGSISFGVFYSLMENYSPFTIDLSNNLFIAAVVGGALAGIGLGFILRFGG 120 Query: 129 XXXXDDILSLLISEWKGIKVGTVFILMDVIVLALSLFYMPLKETLYTVMAVVVAGYVITF 188 DDIL++++S+ +G +F + D IVLALSL+Y+ E +T++++ V + Sbjct: 121 ATGGDDILTIVLSKKTRFTIGQIFFVFDAIVLALSLYYLNWTEIAFTILSIAVQAKTLDL 180 Query: 189 TTSLGRPKLGKAPTIQPT---LSKPH 211 + PK KA QP +SK H Sbjct: 181 ---IYYPKTEKAEEKQPVSIPMSKKH 203 >ref|NP_981062.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS43670.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 220 Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/206 (36%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 9 IILSGTLLLAFTYYHINYQNHLTEGGFVGLSLLGKYVLGISPSLTILILDIPVLLIAMIF 68 ++L G+ +LA YHI++QNHLTEGGFVG++L + ISPS++ +++DIP++L+ Sbjct: 15 MVLIGSFILAAALYHIHFQNHLTEGGFVGIALFIQNFYDISPSISTVMMDIPIILLCASL 74 Query: 69 KGRAFVLNTFISVGAFTVFYSLMERYSGWVINLQDNLPLAALLSGVLTXXXXXXXXXXXX 128 GR V +F+ +F VFYSLME YS + ++L +NL +AA++ G L Sbjct: 75 LGRKMVGYSFLGSISFGVFYSLMENYSPFTVDLSNNLFIAAVVGGALAGIGLGFILRFGG 134 Query: 129 XXXXDDILSLLISEWKGIKVGTVFILMDVIVLALSLFYMPLKETLYTVMAVVVAGYVITF 188 DDIL++++S+ +G +F + D IVLALSL+Y+ E +T++++ V + Sbjct: 135 ATGGDDILTIVLSKKTRFTIGQIFFVFDAIVLALSLYYLNWTEIAFTILSIAVQAKTLDL 194 Query: 189 TTSLGRPKLGKAPTIQPT---LSKPH 211 + PK KA QP +SK H Sbjct: 195 ---IYYPKTEKAEEKQPVSIPMSKKH 217 >ref|NP_834339.1| hypothetical Membrane Spanning Protein [Bacillus cereus ATCC 14579] gb|AAP11540.1| hypothetical Membrane Spanning Protein [Bacillus cereus ATCC 14579] Length = 220 Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 120/206 (58%), Gaps = 6/206 (2%) Query: 9 IILSGTLLLAFTYYHINYQNHLTEGGFVGLSLLGKYVLGISPSLTILILDIPVLLIAMIF 68 ++L G+ +LA YHI++QNHLTEGGFVG++L + ISPS++ +++DIP++L+ F Sbjct: 15 MVLIGSFILAAALYHIHFQNHLTEGGFVGIALFIQNFYDISPSISTVLMDIPIILLCASF 74 Query: 69 KGRAFVLNTFISVGAFTVFYSLMERYSGWVINLQDNLPLAALLSGVLTXXXXXXXXXXXX 128 GR V +F+ +F VFYS ME YS + ++L +NL +AA++ G L Sbjct: 75 LGRKMVGYSFLGSISFGVFYSFMENYSPFTVDLSNNLFIAAVVGGALAGIGLGFILRFGG 134 Query: 129 XXXXDDILSLLISEWKGIKVGTVFILMDVIVLALSLFYMPLKETLYTVMAVVVAGYVITF 188 DDIL++++S+ +G +F + D IVLALSL+Y+ E +T++++ V + Sbjct: 135 ATGGDDILTIVLSKRTRFTIGQIFFVFDAIVLALSLYYLNWTEIAFTILSIAVQAKTLDL 194 Query: 189 TTSLGRPKLGKAPTIQPT---LSKPH 211 + PK K QP +SK H Sbjct: 195 ---IYYPKTEKTAEKQPVSVPMSKKH 217 >ref|NP_242544.1| BH1678~unknown conserved protein [Bacillus halodurans] pir||F83859 hypothetical protein BH1678 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05397.1| BH1678~unknown conserved protein [Bacillus halodurans] Length = 290 Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 100/183 (54%) Query: 6 RLTIILSGTLLLAFTYYHINYQNHLTEGGFVGLSLLGKYVLGISPSLTILILDIPVLLIA 65 + IL G+ + +F + N +N+L EGGF G++L+ ++ I+P++T L+L+IP+LLI Sbjct: 9 NIVFILLGSAIFSFGLVYFNMENNLAEGGFTGITLILYFMFQINPAVTNLVLNIPILLIG 68 Query: 66 MIFKGRAFVLNTFISVGAFTVFYSLMERYSGWVINLQDNLPLAALLSGVLTXXXXXXXXX 125 GR ++ T I + +VF + +R+ I L D++ LAAL +GV Sbjct: 69 WKILGRVTLIYTIIGTVSVSVFLEMFQRWKFMDIPLHDDMTLAALFAGVFVGTGLGIVFR 128 Query: 126 XXXXXXXDDILSLLISEWKGIKVGTVFILMDVIVLALSLFYMPLKETLYTVMAVVVAGYV 185 DI++ L + G +G + D +V+A SL Y+ +E +YT++AV +A V Sbjct: 129 FGGTTGGVDIIAKLGFRYLGWSMGKTMFMFDAVVIASSLIYLNYREAMYTLLAVFIAAKV 188 Query: 186 ITF 188 I F Sbjct: 189 IDF 191 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.327 0.144 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 281,774,999 Number of extensions: 10432652 Number of successful extensions: 34577 Number of sequences better than 1.0e-05: 92 Number of HSP's gapped: 34541 Number of HSP's successfully gapped: 92 Length of query: 216 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 95 Effective length of database: 428,710,599 Effective search space: 40727506905 Effective search space used: 40727506905 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 123 (52.0 bits)