BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0498.0009.p (318 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241350.1| transmembrane lipoprotein [Bacillus halodurans]... 258 1e-67 ref|NP_693011.1| hypothetical protein OB2090 [Oceanobacillus ihe... 256 6e-67 gb|EAJ48148.1| unknown [environmental sequence] 249 5e-65 ref|NP_241931.1| BH1065~unknown conserved protein [Bacillus halo... 245 1e-63 ref|ZP_00035516.1| COG4209: ABC-type polysaccharide transport sy... 244 2e-63 >ref|NP_241350.1| transmembrane lipoprotein [Bacillus halodurans] pir||D83710 transmembrane lipoprotein BH0484 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04203.1| transmembrane lipoprotein [Bacillus halodurans] Length = 325 Score = 258 bits (660), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 131/297 (44%), Positives = 198/297 (66%), Gaps = 2/297 (0%) Query: 18 RQAWIRIWGMRALYLMLLPCLIWYFVFKYLPMYGVIISFKDYSFTDGILHSPWADPWYKY 77 +Q RI+ + LYLM+LP L+++ +FKY+PM+G+II+F+DY G+ S W +K+ Sbjct: 26 QQKLKRIFRNKYLYLMILPGLVYFLIFKYVPMWGLIIAFQDYQPFLGVTGSEWVG--FKH 83 Query: 78 FKMFFDSPYFLQLMSNTLLISLYKLVFGMLPSIILAILFHECRVMWLKRWVQTLSYMPHF 137 F+ F P F QL+ NTL++ LY L+F IILA+L +E R+M KR+VQT+ Y+PHF Sbjct: 84 FERLFTEPTFFQLLRNTLVLFLYNLIFFFPVPIILAVLLNEIRLMVFKRFVQTMIYIPHF 143 Query: 138 LSWIIIYGISVAFFSETTGLVNRWITEAGGSSISFLGSTEWFRSMLVSTEIWKDIGWGAI 197 +SW+I+ ++ F+ G++N I G +++FL S +WFR + + IW++ GW I Sbjct: 144 MSWVIVVSLTYVLFTTDGGVINEIIYSITGKNVNFLMSEDWFRPLYILQVIWREAGWATI 203 Query: 198 VYLAAISGIDPTLFEAARVDGASRLRMIWHITLPGIRNVXXXXXXXXXGSIMDAGFEQIY 257 +Y AAI+ IDP+L+EAA++DGA+R R IWHITLP IR+V G I++ GFE ++ Sbjct: 204 IYFAAIAAIDPSLYEAAKMDGANRFRQIWHITLPAIRSVIVVLLILKIGDILELGFEHVF 263 Query: 258 VFYNPRVYEVGDIIDTWVYRTGLEQMNFSLATTVGLFKSAIGFVLVLGANKLAKRWG 314 + N EV +I DT+VY GL++ FS +T VG FKS +G ++V+ AN LAK++G Sbjct: 264 LMLNAMNREVAEIFDTYVYTAGLKEGQFSYSTAVGFFKSIVGLIMVMLANWLAKKFG 320 >ref|NP_693011.1| hypothetical protein OB2090 [Oceanobacillus iheyensis HTE831] dbj|BAC14046.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 320 Score = 256 bits (653), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 129/313 (41%), Positives = 196/313 (62%), Gaps = 2/313 (0%) Query: 2 EESIGMTRNKTAESPLRQAWIRIWGMRALYLMLLPCLIWYFVFKYLPMYGVIISFKDYSF 61 E + M +S + I + +YLM+LP ++++F++KYLPM G++ISF+DY Sbjct: 5 EGELRMESASIKKSRRHEILKNIKKNKLIYLMILPGILYFFIYKYLPMTGLVISFQDYKP 64 Query: 62 TDGILHSPWADPWYKYFKMFFDSPYFLQLMSNTLLISLYKLVFGMLPSIILAILFHECRV 121 GI S W +++F+ F SP F + NTL++ +++ II++++ +E R Sbjct: 65 YLGISGSEWVG--FEHFERLFTSPDFWMIFRNTLILFALQIIIFFPIPIIISLMLNEVRH 122 Query: 122 MWLKRWVQTLSYMPHFLSWIIIYGISVAFFSETTGLVNRWITEAGGSSISFLGSTEWFRS 181 KR +QTL Y+PHF+SW++I IS + G++N I G I+FL + EWFR Sbjct: 123 SLYKRGIQTLIYIPHFMSWVVIVSISYVMLTLDGGIINSLIEYFGFEKINFLMNEEWFRP 182 Query: 182 MLVSTEIWKDIGWGAIVYLAAISGIDPTLFEAARVDGASRLRMIWHITLPGIRNVXXXXX 241 M + IW++ GWG I++LAAI+G+DP L+EAA++DGA+RLR +WHITLP IR+V Sbjct: 183 MYILQVIWREAGWGTIIFLAAITGVDPQLYEAAKMDGANRLRQMWHITLPAIRSVIIIML 242 Query: 242 XXXXGSIMDAGFEQIYVFYNPRVYEVGDIIDTWVYRTGLEQMNFSLATTVGLFKSAIGFV 301 G +++ GFE +Y+ N EVG+I DT+VY GL+Q FS +T VG FK +G + Sbjct: 243 ILKIGDVLELGFEHVYLLLNASNREVGEIFDTYVYTAGLQQGQFSYSTAVGFFKGVVGLI 302 Query: 302 LVLGANKLAKRWG 314 LV+ AN+LAKR+G Sbjct: 303 LVIFANRLAKRFG 315 >gb|EAJ48148.1| unknown [environmental sequence] Length = 251 Score = 249 bits (637), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 121/245 (49%), Positives = 173/245 (70%), Gaps = 1/245 (0%) Query: 75 YKYFKMFFDSPYFLQLMSNTLLISLYKLVFGMLPSIILAILFHECRVMWLKRWVQTLSYM 134 +K+F+ F S YFL ++ NTL+IS K++FG IILA+L +E M LKR +QT+SY+ Sbjct: 7 FKHFERFTSSVYFLDVIENTLIISGLKILFGFPAPIILALLLNEVLRMSLKRIMQTISYL 66 Query: 135 PHFLSWIIIYGISVAFFSETTGLVNRWITEAGGSSISFLGSTEWFRSMLVSTEIWKDIGW 194 PHF+SW++ G+ A + + GL+ I + GS+I+FLG+ ++F +LV++ +WK IGW Sbjct: 67 PHFISWVVTAGMITALLATSGGLLTETINDFTGSNINFLGNKDYFVGILVTSHVWKTIGW 126 Query: 195 GAIVYLAAISGIDPTLFEAARVDGASRLRMIWHITLPGIRNVXXXXXXXXXGSIMDAGFE 254 +I+YLAA+S IDP L+E+AR+DGA+RL+M WHITLP I V G++++AGFE Sbjct: 127 SSIIYLAAMSSIDPALYESARIDGANRLQMAWHITLPSIMFVIVIMFLLEIGNLLEAGFE 186 Query: 255 QIYVFYNPRVYEVGDIIDTWVYRTGLEQMNFSLATTVGLFKSAIGFVLVLGANKLAKRWG 314 QI + Y+P VY+V DIIDT+VYR GL + +S A VGLFK+ I FVL+ AN+LA R G Sbjct: 187 QILLLYSPSVYKVADIIDTFVYREGLLALKYSFAAAVGLFKAVIAFVLLYTANRLANRLG 246 Query: 315 G-GIW 318 G+W Sbjct: 247 QTGLW 251 >ref|NP_241931.1| BH1065~unknown conserved protein [Bacillus halodurans] pir||A83783 hypothetical protein BH1065 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04784.1| BH1065~unknown conserved protein [Bacillus halodurans] Length = 317 Score = 245 bits (626), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 131/317 (41%), Positives = 202/317 (63%), Gaps = 9/317 (2%) Query: 3 ESIGMTRN-KTAESPLRQAWIRIWGMR---ALYLMLLPCLIWYFVFKYLPMYGVIISFKD 58 ES +T N KT E L++ + W R L+++L+P L+ +F+Y PM+G++++F+D Sbjct: 2 ESQAVTSNAKTVERKLKK---QKWNFRRTWQLHVLLIPALVLALIFQYGPMFGIVMAFQD 58 Query: 59 YSFTDGILHSPWADPWYKYFKMFFDSPYFLQLMSNTLLISLYKLVFGMLPSIILAILFHE 118 Y G S W ++F F+ Y Q++ NTL+IS+ K++FG++ II+A+L +E Sbjct: 59 YKPWLGFTGSEWVG--LQHFITMFEYDYAKQVIWNTLVISVLKMIFGLIVPIIVALLLNE 116 Query: 119 CRVMWLKRWVQTLSYMPHFLSWIIIYGISVAFFSETTGLVNRWITEAGGSSISFLGSTEW 178 M +KR VQT+ Y+P+FLSW+I+ GI + S G+VN+ + G I FLGS +W Sbjct: 117 MYQMVVKRTVQTIIYLPYFLSWVILGGILIDVLSPDGGIVNQALGLFGIDPIFFLGSNDW 176 Query: 179 FRSMLVSTEIWKDIGWGAIVYLAAISGIDPTLFEAARVDGASRLRMIWHITLPGIRNVXX 238 FR+ +V +++WK+ G+ IV+LAAI+ ++P L+EAA VDGA+R + HITLP + + Sbjct: 177 FRTTVVISDLWKETGFNTIVFLAAITAVNPNLYEAAVVDGANRWKQTLHITLPAMLPIII 236 Query: 239 XXXXXXXGSIMDAGFEQIYVFYNPRVYEVGDIIDTWVYRTGLEQMNFSLATTVGLFKSAI 298 G+I++AGF+QI+ YNP VY+ GDIIDT+VYR L +FS T VGLFKS I Sbjct: 237 VVATLSLGNILNAGFDQIFNLYNPLVYQTGDIIDTYVYRVSLVNGDFSYGTAVGLFKSLI 296 Query: 299 GFVLVLGANKLAKRWGG 315 VL++ +LA ++ Sbjct: 297 SLVLIIIGYRLAYKYAN 313 >ref|ZP_00035516.1| COG4209: ABC-type polysaccharide transport system, permease component [Enterococcus faecium] Length = 324 Score = 244 bits (623), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 129/317 (40%), Positives = 192/317 (60%), Gaps = 8/317 (2%) Query: 2 EESIGMTRNKTAESPLRQAWIRIWGMRA---LYLMLLPCLIWYFVFKYLPMYGVIISFKD 58 +E +T +K E R+ I I G++ LY+M+LP ++++ +F+YLPM G++I+F+D Sbjct: 7 QEPFQLTLSKKEEKLRRRKKI-IAGIKTNKFLYVMILPGVLYFLIFRYLPMGGLVIAFQD 65 Query: 59 YSFTDGILHSPWADPWYKYFKMFFDSPYFLQLMSNTL-LISLYKLVFGMLPSIILAILFH 117 Y GI+ SPW +K+F F P F L+ NTL L L VF +P IIL++L + Sbjct: 66 YQPFLGIMGSPWVG--FKHFIRLFTEPTFFTLLRNTLILFGLNIFVFFPMP-IILSLLLN 122 Query: 118 ECRVMWLKRWVQTLSYMPHFLSWIIIYGISVAFFSETTGLVNRWITEAGGSSISFLGSTE 177 E LK +QT+ Y+PHF+SW+II I+ F + G++N ++ G ISFL S E Sbjct: 123 EVTNKRLKNGIQTIIYIPHFMSWVIIVSITYVFLNVDGGVLNEFLATMGFEKISFLTSPE 182 Query: 178 WFRSMLVSTEIWKDIGWGAIVYLAAISGIDPTLFEAARVDGASRLRMIWHITLPGIRNVX 237 W R++ + IWK++GW I+YL+AI+ +D L+EAA +DGA RLR WH+TLP IR V Sbjct: 183 WTRTVYIGQVIWKELGWSTIIYLSAITAVDTQLYEAAEMDGAGRLRKTWHVTLPAIRPVI 242 Query: 238 XXXXXXXXGSIMDAGFEQIYVFYNPRVYEVGDIIDTWVYRTGLEQMNFSLATTVGLFKSA 297 G +D GFE +Y+ N V +I DT++Y GL+ S +T +GLFK Sbjct: 243 ITLLILKIGQTLDLGFEHMYLLLNSLNRSVAEIFDTYIYTAGLKNGQLSFSTAMGLFKGV 302 Query: 298 IGFVLVLGANKLAKRWG 314 +G +V+ ANK+AK+ G Sbjct: 303 VGLFMVILANKIAKKLG 319 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.328 0.142 0.475 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 471,208,121 Number of extensions: 18698826 Number of successful extensions: 63017 Number of sequences better than 1.0e-05: 464 Number of HSP's gapped: 62861 Number of HSP's successfully gapped: 465 Length of query: 318 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 193 Effective length of database: 417,850,203 Effective search space: 80645089179 Effective search space used: 80645089179 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 126 (53.1 bits)