BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0498.0006.p (766 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAP49320.1| Uvs077 [uncultured bacterium] 252 2e-65 gb|EAA75744.1| conserved hypothetical protein [Gibberella zeae P... 243 1e-62 gb|AAO64249.1| unknown [Fusarium sporotrichioides] 213 1e-53 ref|NP_811371.1| putative pyridine nucleotide-disulphide oxidore... 169 2e-40 ref|NP_868020.1| similar to NADH-dependant oxidoreductases [Pire... 124 6e-27 >gb|AAP49320.1| Uvs077 [uncultured bacterium] Length = 760 Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 208/370 (56%), Gaps = 25/370 (6%) Query: 35 IIQDRPVLGGNSSSEIRVTPHGAAQF----HAYARETGIISELLIEERALNHEPILENGW 90 +IQDRPVLGGN+SSE+R+ GA + ++RE G+I E++++ N L N Sbjct: 47 LIQDRPVLGGNASSEVRLWALGATSHMGNNNRWSREGGVIDEIMLDNLKQNQ---LGNAL 103 Query: 91 TNSVWDMVLYNLAVSTPNLTLHLNSTVTEVHKNAERHISSVTVRVAGAETQIAIEGRVFI 150 ++D +L N + N+TL LN+ V +V+K HI SV + TQ I +F Sbjct: 104 ---IFDSILLNKVSAETNITLLLNTAVFQVNKTLATHIDSVIAFCSQNSTQYHINAPLFC 160 Query: 151 DCTGDGVVADLAGCEWRWGSEGREEFSEPHAPLAASGDTMGSSIHFKAKDMGRPVPFAAP 210 D +GDG++A AG +R G+E +EF E AP S D +G S+ F +K + RPV F P Sbjct: 161 DSSGDGILAFNAGASFRMGAESCDEFGELMAPKNESTDLLGHSLFFYSKKLDRPVVFTKP 220 Query: 211 DWAVRHEDPAFF-YDQGRHFYDLAAGYWWIEIGIPWNTIYDNEHIRHELTRHTLGIWDWI 269 D+A HE+ A + + D +WW+E G +TIY +E I+ EL + GIWD+I Sbjct: 221 DFAYSHEEIAAIPRCKNINGNDSGCKFWWLEFGGVLDTIYQSEDIKWELWKIVYGIWDYI 280 Query: 270 KNRDPLLKEKAANYALDWIGQVPGKRESRRVLGRYFMTEHDPAGRTIFPDEIAYGGWFID 329 KN N L+W+G +PGKRESRR G Y + + D + IF D ++YGGW ID Sbjct: 281 KNSGEF--SDVENLTLEWVGTIPGKRESRRFEGHYMLKQQDIVTQQIFDDAVSYGGWAID 338 Query: 330 LHSTGGLLAPTAEPSSAEGYAETSEYAIKSYCGPYGIPLRILMSKDIDNLLLAGRNVSVS 389 LH G+ + +P+ ++ +++ G Y IP R +S+DIDNL LAGR +S + Sbjct: 339 LHPAEGIYSD--KPACSQFHSK----------GIYQIPYRCFVSRDIDNLFLAGRIISAT 386 Query: 390 HAALGTVRVM 399 H A G+ RVM Sbjct: 387 HMAFGSTRVM 396 >gb|EAA75744.1| conserved hypothetical protein [Gibberella zeae PH-1] Length = 757 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 207/761 (27%), Positives = 319/761 (41%), Gaps = 92/761 (12%) Query: 35 IIQDRPVLGGNSSSEIRVTPHGAAQF----HAYARETGIISELLIEERALNHE--PILEN 88 +IQDRPVLGGN+SSE+R+ GA + YARE G++ E+L+E N E P+ Sbjct: 57 LIQDRPVLGGNASSEVRLWILGATSHMFNNNRYAREGGLVDEILLENLYRNPEGNPL--- 113 Query: 89 GWTNSVWDMVLYNLAVSTPNLTLHLNSTVTEVHKNAERHISSVTVRVAGAETQIAIEGRV 148 + D +L PN+ L LN+ + K+ +R ISSV+ + + + I Sbjct: 114 -----ILDTILLEKVRLEPNIQLFLNTALVGCEKDGDR-ISSVSTFNSQSSLKFNIRAEQ 167 Query: 149 FIDCTGDGVVADLAGCEWRWGSEGREEFSEPHAPLAASGDTMGSSIHFKAKDMGRPVPFA 208 FIDCTGDG ++ LAG +R G+E R+EF E AP + G +G SI+F KD+G+PV F Sbjct: 168 FIDCTGDGTLSFLAGAPFRIGAEKRDEFGELFAPSSEYGHLLGHSIYFYTKDVGKPVKFV 227 Query: 209 APDWAVRHEDPAFFYDQGRHFYDLAAGYWWIEIGIPWNTIYDNEHIRHELTRHTLGIWDW 268 AP +A++ + + ++ WWIE G +TI+D E I+ EL + G+WD+ Sbjct: 228 APSYALKDVETEIPRFKSFSTKEMGCNLWWIEYGGRLDTIHDTEEIKWELWKVVYGVWDY 287 Query: 269 IKN--RDPLLKEKAANYALDWIGQVPGKRESRRVLGRYFMTEHDPAGRTIFPDEIAYGGW 326 KN R P +A L+W+G +PGKRESRR +G M + D + D +++GGW Sbjct: 288 FKNSGRFP----EAETLTLEWVGTIPGKRESRRFVGPKMMVQQDIVEQRFHSDAVSFGGW 343 Query: 327 FIDLHSTGGLLAPTAEPSSAEGYAETSEYAIKSYCGPYGIPLRILMSKDIDNLLLAGRNV 386 +DLH A+G+ G Y IP ++ DI NL+ GR + Sbjct: 344 SLDLH-------------PADGWHSK---------GVYQIPFSSMVCSDIPNLMYGGRII 381 Query: 387 SVSHAALGTVRVMXXXXXXXXXXXXXXXXXXXXXREACS-LDFADIREVQQILLREGCFL 445 S SH A + RVM + L A+++ Q L+R G F+ Sbjct: 382 SASHVAFASTRVMATCGANANALGIAASLCKKNTIDPVQLLQKAEMKNFQLELMRFGQFI 441 Query: 446 PNCRNEDPGDXXXXXXXXXXXXXXXHGVGPESRDYTGGFGGTRLPDKEP---LTHRRGQW 502 P + ED D + + F ++LP P L Q Sbjct: 442 PGYKLEDEKDLIRSATKI---------------EDSSTFELSQLPADGPPKVLVRSLAQM 486 Query: 503 IAAGTEEIRSLAVCLSNESGTEQTIEASLVPVDSIWDYECGAKQPLARQQLAVPPGRMQW 562 + + ++ + TE T++ S Y + LA ++ ++ PG Sbjct: 487 LPISQGPVPKFSITAMSVESTELTVQLR----GSEKPYNYTPEVILAEKRFSLDPGENHL 542 Query: 563 VAWEAGLTAADGLRSGGYVRLELAANPQVEWHKGGTVIPG---------HTSAYEMGPSK 613 V + YV L N V T + + ++G + Sbjct: 543 V-----IDFEIENPQTQYVFLAFMQNESVALCTSKTRVSALMTVEHECTQSPPSDVGVDE 597 Query: 614 MRRYGD-----GGTLSFRIEPPQACYEPSNVLTGIARPYDYTNMWRSDPAGPLPQRLELE 668 R+ G L+ +EPP + N+ G+ RP TN W +GP + L++ Sbjct: 598 FERWTPVRRPMGHNLALTLEPPLQAWGVQNLCNGVTRPTKRTNCWVPG-SGPDRKLLKVF 656 Query: 669 WETEECIGTVELAFP---GQLFREYHRYPPFYRDPQCPRDYSIDAWTGVGWTTVASVTGN 725 W + V + F R P P C + + + + G + N Sbjct: 657 WSNPVEVSKVVVCFDTDYDHALESVLRGHPERTIPFCVKKWRLLDLSE-GEKELYVEDEN 715 Query: 726 YQTRRRHPLSEAVKTDKLRVTVHATNGDPSAC--IAEIRCY 764 + +RR L K L V + NG S I E+R Y Sbjct: 716 HMSRREVVLDSRRKLTNLGVEILELNGGESVLGGIFEVRVY 756 >gb|AAO64249.1| unknown [Fusarium sporotrichioides] Length = 760 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 200/763 (26%), Positives = 308/763 (40%), Gaps = 93/763 (12%) Query: 35 IIQDRPVLGGNSSSEIRVTPHGAAQF----HAYARETGIISELLIEERALNHE--PILEN 88 +IQDRPVLGGN+SSE+R+ GA + YARE G++ E+L+E N E P+ Sbjct: 57 LIQDRPVLGGNASSEVRLWILGATSHMFNNNRYAREGGLVDEILLENLYRNPEGNPL--- 113 Query: 89 GWTNSVWDMVLYNLAVSTPNLTLHLNSTVTEVHKNAERHISSVTVRVAGAETQIAIEGRV 148 + D +L PN+ L LN+ + K+ +R ISS++ + + I Sbjct: 114 -----ILDTILLEKVKLEPNIKLFLNTALAGCEKDGDR-ISSISAFSSQTSLKFNIRADQ 167 Query: 149 FIDCTGDGVVADLAGCEWRWGSEGREEFSEPHAPLAASGDTMGSSIHFKAKDMGRPVPFA 208 FIDCTGDG ++ LAG +R G+E R+EF E AP + G +G SI+F KD+G+PV F Sbjct: 168 FIDCTGDGTLSFLAGAPFRIGAEKRDEFGELFAPSSEYGHLLGHSIYFYTKDVGKPVKFV 227 Query: 209 APDWAVRHEDPAFFYDQGRHFYDLAAGYWWIEIGIPWNTIYDNEHIRHELTRHTLGIWDW 268 AP +A++ + + ++ WWIE G +TI+D E I+ EL + G+WD+ Sbjct: 228 APSYALKDVEAEIPRFKSFSTKEMGCNLWWIEYGGRLDTIHDTEEIKWELWKVVYGVWDY 287 Query: 269 IKN--RDPLLKEKAANYALDWIGQVPGKRESRRVLGRYFMTEHDPAGRTIFPDEIAYGGW 326 KN R P +A N L+W+G +PGKRESRR G+Y + Sbjct: 288 FKNSGRFP----EAENLTLEWVGTIPGKRESRR-FGQYSL-------------------- 322 Query: 327 FIDLHSTGGLLAPTAEPSSAEGYAETSEYAIKSYCGP--YGIPLRILMSKDIDNLLLAGR 384 + LHS G +L + Y + K P Y IP ++ +I NL+ GR Sbjct: 323 -LGLHSRGSILTLSLSVVGHSIYTLRMVSSPKWMAAPSVYQIPFSSMVCSEIPNLMYGGR 381 Query: 385 NVSVSHAALGTVRVMXXXXXXXXXXXXXXXXXXXXXREACS-LDFADIREVQQILLREGC 443 +S SH A + RVM + L +++ Q L+R G Sbjct: 382 IISASHVAFASTRVMATCGANANALGVAASLCKAKAVDPVQLLQKGEMKNFQLELMRFGQ 441 Query: 444 FLPNCRNEDPGDXXXXXXXXXXXXXXXHGVGPESRDYTGGFGGTRLPDKEP---LTHRRG 500 F+P + ED D + + F ++LP P L Sbjct: 442 FIPGYKLEDAKDLVRSASKI---------------EGSPAFELSQLPADGPPKVLVRSLA 486 Query: 501 QWIAAGTEEIRSLAVCLSNESGTEQTIEASLVPVDSIWDYECGAKQPLARQQLAVPPGRM 560 Q + + ++ + T+ T++ S Y + LA ++ PG Sbjct: 487 QMLPMSQGPVPKFSITAISVEATKLTVQLR----GSEKPYNYTPEVILAETTFSLDPGAN 542 Query: 561 QWVAWEAGLTAADGLRSGGYVRLELAANPQVEWHKGGTVIPG---------HTSAYEMGP 611 V + A YV L N V T + + ++G Sbjct: 543 DLV-----IDFAIENPQTQYVFLAFIQNEAVALCTSKTRVSALMTVENECTQSPPSDIGV 597 Query: 612 SKMRRYGD-----GGTLSFRIEPPQACYEPSNVLTGIARPYDYTNMWRSDPAGPLPQRLE 666 R+ G L+ +EPP + NV G+ RP TN W + L Sbjct: 598 DAFERWTPVRRPMGHNLALGVEPPLKAWGVENVRNGVPRPTKRTNCWVPCSNSDGRKLLR 657 Query: 667 LEWETEECIGTVELAFP---GQLFREYHRYPPFYRDPQCPRDYSIDAWTGVGWTTVASVT 723 + W + + V + F R P P C + + + + G + Sbjct: 658 VTWPSPVEVSKVVVCFDTDYDHALESVLRGHPERAIPFCVKKWRLLDLSQ-GEQELYIEY 716 Query: 724 GNYQTRRRHPLSEAVKTDKLRVTVHATNGDPSAC--IAEIRCY 764 N+ +RR L + K L V + NG + I E+R Y Sbjct: 717 ENHMSRREVVLDSSRKVTDLGVEMLELNGGENVLGGIFEVRVY 759 >ref|NP_811371.1| putative pyridine nucleotide-disulphide oxidoreductase [Bacteroides thetaiotaomicron VPI-5482] gb|AAO77565.1| putative pyridine nucleotide-disulphide oxidoreductase [Bacteroides thetaiotaomicron VPI-5482] Length = 626 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 127/378 (33%), Positives = 177/378 (46%), Gaps = 49/378 (12%) Query: 35 IIQDRPVLGGNSSSEIRVTPHGAAQFHAYARETGIISEL--LIEERAL---NHEPILENG 89 +I DRPV+GGN+SSEIRV GA + Y G+ E + E A N+E + Sbjct: 218 LINDRPVVGGNNSSEIRVHLGGAIEIGKYPELGGLQKEFGPVKEGNAQPAGNYEDHKKME 277 Query: 90 WTNSVWDMVLYNLAVSTPNLTLHLNSTVTEVHKNAERHISSVTVRVAGAETQIAIEGRVF 149 W + N++L LN V K +R IS + E +I GR+F Sbjct: 278 WLQA------------ETNVSLFLNYRAFSVKKEEDRIISITACHIESGE-EIEFYGRLF 324 Query: 150 IDCTGDGVVADLAGCEWRWGSEGREEFSEPHAPLAASGDTMGSSIHFKAKDMGRPVPFAA 209 DCTGDG + LAG ++R G E R E+ E AP A MG+S+ + + + + F Sbjct: 325 ADCTGDGTIGYLAGADYRMGRESRSEYGETIAPEIADSLVMGTSVQWYSVEDTKTSYF-- 382 Query: 210 PDWAVRHEDPAFFYDQGRHFYD-----LAAGYWWIEIGIPWNTIYDNEHIRHELTRHTLG 264 P F Y G F + + G W E G+ N I D+E IR Sbjct: 383 ---------PEFRY--GIEFNEETCEPVTYGEWTWETGMNKNQINDSEQIRDYGMLVIYS 431 Query: 265 IWDWIKNRDPLLKEKAANYALDWIGQVPGKRESRRVLGRYFMTEHDPAGRTIFPDEIAYG 324 W ++KN+ K +L+W+ + GKRESRR+LG Y + E D D Sbjct: 432 NWSYLKNQSERRKYYKKR-SLEWVAYIAGKRESRRLLGDYVLKEDDLTKHVAHEDASFTT 490 Query: 325 GWFIDLHSTGGLLAPTAEPSS---AEGYAETSEYAIKSYCGPYGIPLRILMSKDIDNLLL 381 W IDLH P E + + T+++ + PY +P R L S++IDNL + Sbjct: 491 TWSIDLHR------PDPENTRYFPGREFKATTDHVV---IYPYPVPYRCLYSRNIDNLFM 541 Query: 382 AGRNVSVSHAALGTVRVM 399 AGRN+SV+H ALGTVRVM Sbjct: 542 AGRNISVTHVALGTVRVM 559 >ref|NP_868020.1| similar to NADH-dependant oxidoreductases [Pirellula sp. 1] emb|CAD75567.1| similar to NADH-dependant oxidoreductases [Pirellula sp.] Length = 822 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 106/368 (28%), Positives = 152/368 (41%), Gaps = 36/368 (9%) Query: 35 IIQDRPVLGGNSSSEIRVTPHGAAQFHAYARETGIISELLIEERALNHEPILENGWTNSV 94 +IQDR VLGGN SSE+RV G + + R I+ E + + G Sbjct: 278 LIQDRGVLGGNGSSEVRVWAMGNIRRGKFPRIGEIVEEF-------SDKATKSPGTYEEF 330 Query: 95 WDMVLYNLAVSTPNLTLHLNSTVTEVHKNAE---RHISSVTVRVAGAETQIAIEGRVFID 151 D + + PN+ L LN V + + I V + + G F+D Sbjct: 331 GDEQKEEIVRAEPNIDLLLNHHAYAVKMKPDSETKQIEHVLALNTQTGEDLRVAGDRFVD 390 Query: 152 CTGDGVVADLAGCEWRWGSEGREEFSEPHAPLAASGDTMGSSIHFKAKDMGRPVPFAAPD 211 CTG G + + A + +GR MG S ++ ++ + F A Sbjct: 391 CTGHGWIGEWASADLDITDKGR----------------MGMSNMWRWDEVEQAPEFPATP 434 Query: 212 WAVRHEDPAFFYDQGRHFYDLAAGYWWIEIGIPWNTIYDNEHIRHELTRHTLGIWDWIKN 271 WA+ F Y + H G W+ E G + + D E IR R G ++ +KN Sbjct: 435 WALPLNMDDFPYPRDHH------GQWFWESGFDIDPLGDAEAIRDWNLRAVYGAFNAMKN 488 Query: 272 RDPLLKEKAANYALDWIGQVPGKRESRRVLGRYFMTEHDPAGRTIFPDEIAYGGWFIDLH 331 D N L W+ + G RESRR+LG + + D + FPD W IDLH Sbjct: 489 GDGAADH--PNAQLTWVAYIGGPRESRRLLGDVVLNQEDIVSKREFPDGCVPSTWSIDLH 546 Query: 332 STGGLLAPTAEPSSAEGYAETSEYAIKSYCGPYGIPLRILMSKDIDNLLLAGRNVSVSHA 391 A + A +SY Y P R S+++DNL +AGR +SV+H Sbjct: 547 YPKKEYATKFPENPFISIAVHDRRVDRSYG--YPAPYRCFYSRNVDNLFMAGRCISVTHE 604 Query: 392 ALGTVRVM 399 ALGTVRVM Sbjct: 605 ALGTVRVM 612 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,172,674,102 Number of extensions: 50862679 Number of successful extensions: 101494 Number of sequences better than 1.0e-05: 14 Number of HSP's gapped: 101476 Number of HSP's successfully gapped: 14 Length of query: 766 Length of database: 757,237,578 Length adjustment: 133 Effective length of query: 633 Effective length of database: 396,129,411 Effective search space: 250749917163 Effective search space used: 250749917163 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)