BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0497.0002.p
         (53 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_632643.1| conserved protein [Methanosarcina mazei Goe1] >...    90   1e-17
ref|NP_781617.1| thymidylate kinase [Clostridium tetani E88] >gi...    90   1e-17
ref|NP_391962.1| similar to hypothetical proteins [Bacillus subt...    90   2e-17
gb|AAH65526.1| FLJ21347 protein [Homo sapiens]                         89   2e-17
ref|ZP_00062180.1| COG1331: Highly conserved protein containing ...    89   3e-17

>ref|NP_632643.1| conserved protein [Methanosarcina mazei Goe1]
 gb|AAM30315.1| conserved protein [Methanosarcina mazei Goe1]
          Length = 700

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/50 (78%), Positives = 45/50 (90%)

Query: 4  HKVPNRLAKEKSPYLLQHAHNPVNWFPWSEEAFEIAKRDNKPVFLSIGYS 53
           K PNRL KEKSPYLLQHA+NPV+W+PW EEAFE A+++NKPVFLSIGYS
Sbjct: 8  QKEPNRLIKEKSPYLLQHAYNPVDWYPWGEEAFEKARKENKPVFLSIGYS 57


>ref|NP_781617.1| thymidylate kinase [Clostridium tetani E88]
 gb|AAO35554.1| thymidylate kinase [Clostridium tetani E88]
          Length = 713

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 48/51 (94%)

Query: 3  THKVPNRLAKEKSPYLLQHAHNPVNWFPWSEEAFEIAKRDNKPVFLSIGYS 53
          +++VPNRLA+EKSPYLLQHA+NPV+W+PW EEAF+ AK ++KP+FLSIGYS
Sbjct: 40 SNRVPNRLAQEKSPYLLQHAYNPVDWYPWGEEAFQKAKEEDKPIFLSIGYS 90


>ref|NP_391962.1| similar to hypothetical proteins [Bacillus subtilis]
 sp|P37512|YYAL_BACSU Hypothetical protein yyaL
 pir||S66006 conserved hypothetical protein yyaL - Bacillus subtilis
 dbj|BAA05212.1| unknown [Bacillus subtilis]
 emb|CAB16119.1| yyaL [Bacillus subtilis subsp. subtilis str. 168]
          Length = 689

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/47 (82%), Positives = 42/47 (89%)

Query: 7  PNRLAKEKSPYLLQHAHNPVNWFPWSEEAFEIAKRDNKPVFLSIGYS 53
          PNRL  EKSPYLLQHAHNPV+WFPW EEAFE AKR+NKPV +SIGYS
Sbjct: 7  PNRLINEKSPYLLQHAHNPVDWFPWGEEAFEKAKRENKPVLVSIGYS 53


>gb|AAH65526.1| FLJ21347 protein [Homo sapiens]
          Length = 742

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/52 (69%), Positives = 46/52 (88%)

Query: 2  TTHKVPNRLAKEKSPYLLQHAHNPVNWFPWSEEAFEIAKRDNKPVFLSIGYS 53
          T  +VPNRL  EKSPYLLQHA+NPV+W+PW EEAF+ A+++NKP+FLS+GYS
Sbjct: 13 TPQRVPNRLIHEKSPYLLQHAYNPVDWYPWGEEAFDKARKENKPIFLSVGYS 64


>ref|ZP_00062180.1| COG1331: Highly conserved protein containing a thioredoxin domain
          [Clostridium thermocellum ATCC 27405]
          Length = 888

 Score = 89.0 bits (219), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 38/53 (71%), Positives = 46/53 (86%)

Query: 1  MTTHKVPNRLAKEKSPYLLQHAHNPVNWFPWSEEAFEIAKRDNKPVFLSIGYS 53
          M+ +K  NRL  EKSPYLLQHA+NPV+W+PW +EAFE AKR+NKP+FLSIGYS
Sbjct: 1  MSAYKQANRLIHEKSPYLLQHAYNPVDWYPWCDEAFEKAKRENKPIFLSIGYS 53


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.317    0.132    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 83,534,971
Number of extensions: 2345671
Number of successful extensions: 6074
Number of sequences better than 1.0e-05: 176
Number of HSP's gapped: 6073
Number of HSP's successfully gapped: 176
Length of query: 53
Length of database: 757,237,578
Length adjustment: 26
Effective length of query: 27
Effective length of database: 686,645,004
Effective search space: 18539415108
Effective search space used: 18539415108
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)