BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0495.0014.p (364 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00103967.1| COG3210: Large exoproteins involved in heme u... 178 2e-43 ref|ZP_00019066.1| hypothetical protein [Chloroflexus aurantiacus] 134 4e-30 ref|NP_971240.1| hypothetical protein TDE0626 [Treponema dentico... 114 3e-24 ref|ZP_00061072.1| COG3210: Large exoproteins involved in heme u... 72 3e-11 ref|NP_720544.1| conserved hypothetical protein [Streptococcus m... 54 6e-06 >ref|ZP_00103967.1| COG3210: Large exoproteins involved in heme utilization or adhesion [Desulfitobacterium hafniense] Length = 644 Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 103/237 (43%), Positives = 144/237 (60%) Query: 29 KGLKAGGDLTVNGGSFTINSADDALHSNSNVSVTNGEFKITAGDDGIHADSLTSLSGGTI 88 KG KAG ++ +N GSF I+S+DDALHSN + +T G + +++GDDG+HAD +++GG + Sbjct: 344 KGFKAGKEMILNEGSFDIDSSDDALHSNGKLVITGGTYAVSSGDDGLHADGDLTITGGIL 403 Query: 89 DITKSYEGIEGGNITISGGDIRVVAXXXXXXXXXXXXXXAAQGTAQQDQFXXXXXXXXXX 148 + KSYEGIEG ITI+GG I V A A Q Sbjct: 404 LVAKSYEGIEGNTITITGGIIEVTARDDGLNVAGGNDGSAFGRPGQNSFTQVSTDHYLRI 463 Query: 149 XXXXVTVDSTGDGLDSNGSVSMTGGTVIVNGPTNDGNGPLDYDGTFDMTGGLLVAAGSSG 208 + VD+ GDGLDSNG++ + GGT+ V+GP N+GN LDYDGT ++GG+L+ GSSG Sbjct: 464 SGGEIKVDAAGDGLDSNGNLFVEGGTITVSGPINNGNAALDYDGTATISGGVLMVTGSSG 523 Query: 209 MAQAPGEDSSQYSVSMSFTAAQQAGTLVHLEDGDGNNILTFAPSKNFSSVVVSSPDL 265 MAQ E+S QYS+ + + + AG+ V L D + IL + +K F+SV +SSPDL Sbjct: 524 MAQGFSEESGQYSLLHNLSTSVAAGSEVTLTDVNDKVILKWTANKEFTSVHLSSPDL 580 >ref|ZP_00019066.1| hypothetical protein [Chloroflexus aurantiacus] Length = 575 Score = 134 bits (336), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 133/234 (56%), Gaps = 7/234 (2%) Query: 29 KGLKAGGDLTVNGGSFTINSADDALHSNSNVSVTNGEFKITAGDDGIHADSLTSLSGGTI 88 KGLKA G + +N G ++ A+D LH+++++++ G F I A DD IHA+ +++ G + Sbjct: 299 KGLKAAGQIIINDGEIRLDVAEDGLHADTSITINGGTFTIAAADDAIHAEQQVTITAGEM 358 Query: 89 DITKSYEGIEGGNITISGGDIRVVAXXXXXXXX-XXXXXXAAQGTAQQDQFXXXXXXXXX 147 ++T SYEGIEG +I I GG I ++A G Q+ Sbjct: 359 NVTDSYEGIEGQHIRIDGGTITIIASDDALNAADGSGAQGGGFGGMGGGQWTLTMTGGS- 417 Query: 148 XXXXXVTVDSTGDGLDSNGSVSMTGGTVIVNGPTNDGNGPLDYDGTFDMTGGLLVAAGSS 207 +TVD+ GDG+D NGS++M+GG ++V GPT N LDYD F ++ G L+A GS+ Sbjct: 418 -----LTVDAGGDGIDVNGSITMSGGVMVVYGPTESMNAALDYDRAFTISAGQLIAVGSA 472 Query: 208 GMAQAPGEDSSQYSVSMSFTAAQQAGTLVHLEDGDGNNILTFAPSKNFSSVVVS 261 GMA AP S+Q +V ++ + Q AGT + + + G I++ P K++ S+V S Sbjct: 473 GMAMAPDTSSTQPAVLINLSTVQTAGTSIAIVNAAGEPIVSLTPDKSYQSLVYS 526 >ref|NP_971240.1| hypothetical protein TDE0626 [Treponema denticola ATCC 35405] gb|AAS11121.1| hypothetical protein TDE0626 [Treponema denticola ATCC 35405] Length = 504 Score = 114 bits (285), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 91/282 (32%), Positives = 131/282 (46%), Gaps = 47/282 (16%) Query: 30 GLKAGGDLTVNGGSFTINSADDALHSNSNVSVTNGEFKITAGDDGIHADSL--------- 80 G+ + DL V GGSFT++++ AL NVS+ +G+F +TAG DGIH+++ Sbjct: 194 GIVSKKDLRVTGGSFTVSASKHALKGCDNVSIADGKFTLTAGKDGIHSENEENAESGNIY 253 Query: 81 --------------------TSLSGGTIDITKSYEGIEGGNITISGGDIRVVAX---XXX 117 ++ GG I+I K+ EG+E I I+GG I VV+ Sbjct: 254 IKNGEFTINAASEALDAINDITIDGGYINIAKADEGMEALTININGGKIMVVSSDDGLNA 313 Query: 118 XXXXXXXXXXAAQGTAQQDQFXXXXXXXXXXXXXX-------------VTVDSTGDGLDS 164 GTA D VT++S DG+DS Sbjct: 314 SYSDKEEIEAKLSGTALTDNSSKKTEKKGPPVLSESAASTYVNITGGEVTINSQADGIDS 373 Query: 165 NGSVSMTGGTVIVNGPTNDGNGPLDYDGTFDMTGGLLVAAGSSGMAQAPGEDSSQYSVSM 224 NGSV ++GG V + GP +DG+ LDYD T ++GG +A+GS GM Q + S+Q S Sbjct: 374 NGSVYVSGGKVNILGPVSDGDAALDYDLTALISGGEFIASGSRGMVQGFSDKSTQASFIA 433 Query: 225 SFTAAQQAGTLVHLEDGDGNNILTFAPSKNFSSVVVSSPDLK 266 +F+ + +V D G IL K+F S+VVSS LK Sbjct: 434 NFSKTVKGEVIVS--DSSGAVILKTNQDKDFQSIVVSSKGLK 473 >ref|ZP_00061072.1| COG3210: Large exoproteins involved in heme utilization or adhesion [Clostridium thermocellum ATCC 27405] Length = 548 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 113/241 (46%), Gaps = 37/241 (15%) Query: 30 GLKAGGDLTVNGGSFTINSADDALHSNSNVSVTNGEFKITAGDDGIHADSLTSLSGGTID 89 GL A + + GG+ T+ + DA+ S + +T G +TA DD IH++ + G I+ Sbjct: 281 GLHANSGIEIKGGNITVTAKSDAIESEKDFEMTGGTLNLTADDDAIHSEKDLVIDDGEIN 340 Query: 90 ITKSYEGIEGGN-ITISGGDIRVVAXXXXXXXXXXXXXXAAQGTAQQDQFXXXXXXXXXX 148 I K YEGIE ITI+GG I + + +D Sbjct: 341 ILKCYEGIESKTTITINGGKINI--------------------NSNEDGLNAASGLYING 380 Query: 149 XXXXVTVDSTGDGLDSNGSVSMTGGTVIVNGPTNDGNGP---LDYDGT-FDMTGGLLVAA 204 +T S DG+DSNG + + GG + G GN P +D D + GG L+AA Sbjct: 381 GELYIT--SGYDGIDSNGPIYINGGYIFSFG----GNIPEGGIDCDWNPLIINGGTLIAA 434 Query: 205 GSSGMAQAPGEDSSQYSVSMSFTAAQQAGTLVHLEDGDGNNILTFAPSKNFSSVVVSSPD 264 G G P S+Q SV + + A +++ ++ +G+ I++F KN+ ++V SSPD Sbjct: 435 G--GSNSTPSTSSTQCSVLL---GSGTANSVISIQR-NGSEIISFTAPKNYQNMVFSSPD 488 Query: 265 L 265 L Sbjct: 489 L 489 >ref|NP_720544.1| conserved hypothetical protein [Streptococcus mutans UA159] gb|AAN57850.1| conserved hypothetical protein [Streptococcus mutans UA159] Length = 613 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 65/254 (25%), Positives = 110/254 (43%), Gaps = 28/254 (11%) Query: 30 GLKAGGDLTVNGGSFTINSADDALHSNSNVSVTNGEF-------KITAGDDGIHADSLTS 82 G+ A ++++ + TI++ DD + + N V +G+ KIT+ GI A+ + Sbjct: 312 GINATSNVSIKKSNVTISAEDDGIQAEDNTDVNSGDIQIKDSIVKITSTSKGITANDEIT 371 Query: 83 LSGGT-IDITKSYEGIEGGNITISGGDIRVVAXXXXXXXXXXXXXXAAQGTAQQDQFXXX 141 + G T I IT EGIEG + + G I + A A + T + D Sbjct: 372 VKGSTFITITSGSEGIEGRYVNLKKGQITINAGDDAIN--------ATEWTTKDDADLSH 423 Query: 142 XXXXXXXXXXXVTVDSTG---------DGLDSNGSVSMTGGTVIVNGPTNDGNGPLDYDG 192 V + +G DG+DSNG++ +T G++ + T D + +DYDG Sbjct: 424 LKNSKKDIENEVAIVISGANISGIGKDDGVDSNGNLYITDGSLKIQSIT-DYSSAIDYDG 482 Query: 193 TFDMTGGLLVAAGSSGMAQAPGEDSSQYSVSMSFTAAQQAGTLVHLEDGDGNNILTFAPS 252 T +GG A G G AQ + + Q ++ + AG + + D G+ + Sbjct: 483 TGFASGGTTWAIGHMGFAQGFSKGTKQAYIAAIVSGL--AGDTITITDSKGHIVAKTKAD 540 Query: 253 KNFSSVVVSSPDLK 266 +F VV S+ +K Sbjct: 541 VDFDHVVFSNKTIK 554 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.308 0.129 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 406,776,972 Number of extensions: 15941184 Number of successful extensions: 38179 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 38148 Number of HSP's successfully gapped: 8 Length of query: 364 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 237 Effective length of database: 412,420,005 Effective search space: 97743541185 Effective search space used: 97743541185 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 126 (53.1 bits)