BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0494.0008.p (818 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241202.1| BH0336~unknown conserved protein in others [Bac... 879 0.0 ref|ZP_00044927.1| COG1203: Predicted helicases [Magnetococcus s... 465 e-129 ref|NP_722087.1| conserved hypothetical protein [Streptococcus m... 343 1e-92 ref|ZP_00088989.1| COG1203: Predicted helicases [Azotobacter vin... 324 5e-87 ref|NP_269633.1| conserved hypothetical protein [Streptococcus p... 302 3e-80 >ref|NP_241202.1| BH0336~unknown conserved protein in others [Bacillus halodurans] pir||H83691 hypothetical protein BH0336 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04055.1| BH0336~unknown conserved protein in others [Bacillus halodurans] Length = 800 Score = 879 bits (2271), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/819 (54%), Positives = 584/819 (71%), Gaps = 23/819 (2%) Query: 3 YIAHIRESDMKVQTVTEHLLEVRTLAEKYGKKLGIKYMAGLAGMLHDLGKYTEEFRNYIV 62 YIAHIRE D +QT+ EHL V+ LAE +G KL ++++AGLAG+LHDLGKYT EF++YI Sbjct: 2 YIAHIREVDKVIQTLKEHLCGVQCLAETFGAKLRLQHVAGLAGLLHDLGKYTNEFKDYIY 61 Query: 63 QAVYHPE-APPSRGSVDHSTAGGKLLFERFHRVPADLSNKEAHINKMILAEVVGNAILSH 121 +AV+ PE A RG VDHSTAGG+LL++ H ++E ++ +LAEVVGNAI+SH Sbjct: 62 KAVFEPELAEKKRGQVDHSTAGGRLLYQMLH-------DRENSFHEKLLAEVVGNAIISH 114 Query: 122 HSYLQDFLNPDSESNFLNRVQDKCLPEFERAKDSFFELVMNETEFHLYVDKAVEELSDYL 181 HS LQD+++P ESNFL RV +K LPE+E A + FF+ VM E E YV KAV+E+ + Sbjct: 115 HSNLQDYISPTIESNFLTRVLEKELPEYESAVERFFQEVMTEAELARYVAKAVDEIKQF- 173 Query: 182 KVDSSSTTELKLMFLTKYVFSALIDADRTNTRCFEEN--QPDPSYNPQQLFSAYYTKLMT 239 D+S T FLTKY+FS LIDADRTNTR F+E + +P+ PQQLF Y+ +L+ Sbjct: 174 -TDNSPTQSF---FLTKYIFSCLIDADRTNTRMFDEQAREEEPT-QPQQLFEHYHQQLLN 228 Query: 240 KIDSFHNHKHAHSAINQLRQGMSEQCEQFAAEPSGIYTLSIPTGGGKTLASLRYXXXXXX 299 + S A IN LR MSEQCE FA PSGIYTLSIPTGGGKTLASLRY Sbjct: 229 HLASLKESDSAQKPINVLRSAMSEQCESFAMRPSGIYTLSIPTGGGKTLASLRYALKHAQ 288 Query: 300 XXXXXXIIYVVPYTTIIEQNANEIRSILKDDEHILEHHSNVVEEETQDDEHEDGSLSLRQ 359 IIY+VP+TTIIEQNA E+R+IL DDE+ILEHHSNVVE+ DE EDG ++ ++ Sbjct: 289 EYNKQRIIYIVPFTTIIEQNAQEVRNILGDDENILEHHSNVVEDSENGDEQEDGVITKKE 348 Query: 360 KLKLAKDNWDAPIIFTTMVQFLNVFYADGSRNIRRLHNLSESVIVFDEVQKVPVRCVSLF 419 +L+LA+DNWD PIIFTT+VQFLNVFYA G+RN RRLHNLS SV++FDEVQKVP +CVSLF Sbjct: 349 RLRLARDNWDRPIIFTTLVQFLNVFYAKGNRNTRRLHNLSHSVLIFDEVQKVPTKCVSLF 408 Query: 420 NQALNFLKSYAHSSIVLCTATQPELDYVRLKLEIEPEAEMIHNLDHVIEAFRRVEIVDRA 479 N+ALNFLK +AH SI+LCTATQP L+ V+ L + + E++ NL V EAF+RVEI+D+ Sbjct: 409 NEALNFLKEFAHCSILLCTATQPTLENVKHSLLKDRDGEIVQNLTEVSEAFKRVEILDK- 467 Query: 480 TNEHFDNDTLTEFVITQMREVSSVLVILNTKSVVQALYRSLNERNLSVPIYHLSTSMCAA 539 T++ N+ L E+V + S L+ILNTK VV+ LY L L P++HLSTSMCAA Sbjct: 468 TDQPMTNERLAEWVRDEAPSWGSTLIILNTKKVVKDLYEKLEGGPL--PVFHLSTSMCAA 525 Query: 540 HRNQILDKVKALLEDKEPVICISTQLIEAGVDVSFQCVIRSLAGLDSIAQAAGRCNRHGE 599 HR LD+++ALL++ P IC++TQLIEAGVDVSF+CVIRSLAGLDSIAQAAGRCNRHGE Sbjct: 526 HRKDQLDEIRALLKEGTPFICVTTQLIEAGVDVSFKCVIRSLAGLDSIAQAAGRCNRHGE 585 Query: 600 DLIRQVYVIDHIEENLKHLKEIKIGKEISRKILIDLSRDASLHGGHILSIQAMEKYFKEF 659 + ++ VYVIDH EE L LKEI++G+EI+ +L + A + G++LS AM +YF+ + Sbjct: 586 EQLQYVYVIDHAEETLSKLKEIEVGQEIAGNVLARFKKKAEKYEGNLLSQAAMREYFRYY 645 Query: 660 YTELATSLNYSIPKLGQEMTTLLSGPRKNNAYYQAYLSKHRAALPLFLLNSYKTAAENFQ 719 Y+++ +LNY + ++ ++MT LL N+Y Y PL L SYKTAA++F+ Sbjct: 646 YSKMDANLNYFVKEVDKDMTKLLMSHAVENSYVTYYQKNTGTHFPLLLNGSYKTAADHFR 705 Query: 720 VIDNLTTTVVVPFGDGPEEGKDIIAELNGQQSIPDLTRLLRKAQQYTINIYSYEKDLLSK 779 VID TT+ +VP+G EG+DIIA+LN + + DL+++L+KAQQYT+N+YS E D L K Sbjct: 706 VIDQNTTSAIVPYG----EGQDIIAQLNSGEWVDDLSKVLKKAQQYTVNLYSQEIDQLKK 761 Query: 780 NGSLVPYLDGKILALKEGAYHPEYGLNLENDSPLDMYMF 818 G++V +LDG + LKE Y +YG++ + + +D F Sbjct: 762 EGAIVMHLDGMVYELKESWYSHQYGVDFKGEGGMDFMSF 800 >ref|ZP_00044927.1| COG1203: Predicted helicases [Magnetococcus sp. MC-1] Length = 829 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 294/845 (34%), Positives = 459/845 (54%), Gaps = 69/845 (8%) Query: 3 YIAHIRESDMKVQTVTEHLLEVRTLAEKYGKKLGIKYMAGLAGMLHDLGKYTEEFRNYIV 62 +IAH R+ D +QTV HL V LA + K+G+ L G+LHDLGKY+ F++YI Sbjct: 5 FIAHARQGDHTIQTVDAHLYGVAALARSFAGKVGLPLTGELMGLLHDLGKYSAAFQDYIR 64 Query: 63 QAVYH-------PEAPPSRGSVDHSTAGGKLLFERFHRVPADLSNKEAHINKMILAEVVG 115 + P AP ++G VDHSTAG +LL++ L ++ + +L +++ Sbjct: 65 SNLGKMDPDGDAPSAPSAKGKVDHSTAGAQLLWDHL------LEQPKSPTAQRMLFQIME 118 Query: 116 NAILSHHSYLQDFLNPDSESNFLNRVQDKCLPEFERAKDSFFELVMN-ETEFHLYVDKAV 174 I SHH L D L D N R + E ++ + +L+ + + H + + + Sbjct: 119 LCIASHHGGLMDCLTADP--NHPTRNAHRQRMEKDKQQTHLPQLLPHVDAPLHQRIQQLL 176 Query: 175 EE----------LSDYLKVDSSSTTELKLMFLTKYVFSALIDADRTNTRCFEENQPDPSY 224 + + S + + LT+++FS+L+DADR ++ FEE P Sbjct: 177 ADPQLLESFTARYKSLCRAGSPTVVHFRFGLLTRFLFSSLLDADRLDSAEFEE--PKRRD 234 Query: 225 NPQQLFSAYYTKLMTKIDSFHNHKHAHSAINQLRQGMSEQCEQFAAEPSGIYTLSIPTGG 284 N L SA + L+ ++++ SA+N +R +++ C+ A P G YTL++PTGG Sbjct: 235 NRLSLGSAQWPALIQRLEAELCSYDRTSAVNAIRHTIADHCQSAANRPRGTYTLTVPTGG 294 Query: 285 GKTLASLRYXXXXXXXXXXXXIIYVVPYTTIIEQNANEIRSILK-----DDEHILEHHSN 339 GKTLASLR+ I Y++P+TTII+QNA IR IL+ + +LEHHSN Sbjct: 295 GKTLASLRFALHHAQQHKMDHIFYIIPFTTIIDQNAQTIRRILEPHPLPEGSVVLEHHSN 354 Query: 340 VVEEETQDDEHEDGSLSLRQKLKLAKDNWDAPIIFTTMVQFLNVFYADGSRNIRRLHNLS 399 + EE L + KLA +NWD P++ TTMVQFL + G+R RR+H+L+ Sbjct: 355 LSEER------------LTWQNKLASENWDRPVVLTTMVQFLETLFGGGTRGARRMHHLA 402 Query: 400 ESVIVFDEVQKVPVRCVSLFNQALNFLKSYAHSSIVLCTATQPELDYV-RLKLEIEPEA- 457 SV++FDE+Q +P++C LFN A+NFL+ ++++LC+ATQP L V K I+ EA Sbjct: 403 NSVLIFDEIQALPLKCTHLFNNAINFLQQQCGATVLLCSATQPHLHCVNETKGAIQREAN 462 Query: 458 -EMIHNLDHVIEAFRRVEIVDRATNEHFDNDTLTEFVITQMREVSSVLVILNTKSVVQAL 516 E++ N + + +RV++ + + T+ + S LV++NTK +AL Sbjct: 463 HELMPNAQQLFKDLKRVQVKSHLHAGELSLTAIAQLAQTEQQRAGSCLVVVNTKKQSRAL 522 Query: 517 YRSLNERNLSVPIYHLSTSMCAAHRNQILDKVKALLEDKEPVICISTQLIEAGVDVSFQC 576 ++ L +++ +YHLST MC HR I +++ L+ ++P +CISTQLIEAGVDV F Sbjct: 523 FQ-LCQKSGVDGLYHLSTDMCQHHRKTIFKEIRQRLDTQQPTLCISTQLIEAGVDVDFDG 581 Query: 577 VIRSLAGLDSIAQAAGRCNRHGEDLIRQVYVI--DHIEENLKHLKEIKIGKEISRKILID 634 VIR AGLDSIAQAAGRCNRHG+ + ++V+ +ENL LKEI+ K+ +++ + Sbjct: 582 VIRFAAGLDSIAQAAGRCNRHGKRPMGTLHVVMPTQAQENLSRLKEIETAKKDFQRMDKE 641 Query: 635 LSRDASLHGGHILSIQAMEKYFKEFYTELATS----LNYSIPK--LGQEMT--TLLSGPR 686 + D + +L+++AME+Y+ Y S L+Y I + +G++ T ++LS Sbjct: 642 MQNDPADLEHDLLTLKAMERYYTYKYGHYNNSMYEYLSYIIDRRQVGRDDTLLSILSDHE 701 Query: 687 KNNAYYQAYLSKHRAALPLFLLNSYKTAAENFQVIDNLTTTVVVPFGDGPEEGKDIIAEL 746 K N +A H+ L ++K A + FQ ID T +++VP EG+ II +L Sbjct: 702 KANIKGEA---THQDDKKTVLRQAFKQAGQIFQAIDAPTRSLLVPHA----EGRSIIQQL 754 Query: 747 NGQQS-IPDLTRLLRKAQQYTINIYSYEKDLLSKNGSLVPYL-DGKILALKEGAYHP-EY 803 G + +L + LR+AQ YT+N+Y Y DLL K S+ D I L AY+ ++ Sbjct: 755 CGWEGDYRELKKWLRQAQPYTVNLYPYTWDLLLKERSIAQTQEDSGIWYLINDAYYSDDF 814 Query: 804 GLNLE 808 GL E Sbjct: 815 GLFYE 819 >ref|NP_722087.1| conserved hypothetical protein [Streptococcus mutans UA159] gb|AAN59393.1| conserved hypothetical protein [Streptococcus mutans UA159] Length = 802 Score = 343 bits (879), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 268/838 (31%), Positives = 426/838 (50%), Gaps = 90/838 (10%) Query: 15 QTVTEHLLEVRTLAEKYGKKLGIKYMAGLAGMLHDLGKYTEEFRNYIVQAVYHPEAPPSR 74 Q++ +H V A + + +G + L GM HDLGK E+F+N + + +P Sbjct: 15 QSLEDHSFNVANKAREDAEFIGQGDLLFLLGMFHDLGKADEKFQNKLTK---NPTM---- 67 Query: 75 GSVDHSTAGGKLLFERFH-RVPADLSNKEAHINKMILAEVVGNAILSHHSYLQDFLNPDS 133 VDH+ AG K L+E+ R+ A +K ++ E+V I +HH D ++ +S Sbjct: 68 -HVDHAYAGAKYLYEKIKIRLSAKGVDKAT---RLQFNEIVAYVIAAHHGMF-DIVDLES 122 Query: 134 ESNFLNRVQDK-CLPE----FERAKDSFFELVMNETEFHLY------VDKAVEELSDYL- 181 E + N+++++ P+ F+ +F + + E + Y +DK+ E L Sbjct: 123 EQHAYNKLRNRIARPKSDYHFDSDVTNFANFLETKLEHYGYQDLGMLIDKSFENYQQALS 182 Query: 182 KVDSSSTTE---LKLMFLTKYVFSALIDADRTNTRCFEENQPDPSYNPQQ------LFSA 232 K+D ++E + F+ Y+ S L +AD +T N NP + L + Sbjct: 183 KLDCQDSSEEVYYQSCFVRLYL-SLLKNADILDTI----NAYGLLINPLKQEEKIRLNRS 237 Query: 233 YYTKLMTKIDSFHNHKHAHSAINQLRQGMSEQCEQFA-AEPSGIYTLSIPTGGGKTLASL 291 Y + K F + + +N++R ++E+ + ++ +GIY L +PTG GKT S+ Sbjct: 238 YLEAIEKKYGEFGS---PTTRLNEIRSQIAERVKSRGESDSTGIYRLDLPTGAGKTNLSM 294 Query: 292 RYXXXXXXXXXXXXIIYVVPYTTIIEQNANEIRSILKDDEHILEHHSNVVEEETQDDEHE 351 RY Y+ P+ +++EQNA I+ ++ +D +LEHHSNVV+ + ++++ Sbjct: 295 RYAFHQLVDQDRSRFFYITPFLSVLEQNAAAIKKVIGED-GVLEHHSNVVQNKQENEDKG 353 Query: 352 DGSLSLRQKLKLAKDNWDAPIIFTTMVQFLNVFYADGSRNIRRLHNLSESVIVFDEVQKV 411 D SL + + ++WD+P++ T+MVQF + S NIRR +L+ SV++ DEVQ + Sbjct: 354 DEKESLLPEYLI--ESWDSPVVLTSMVQFFQTLFKTKSANIRRFSSLANSVLILDEVQSL 411 Query: 412 PVRCVSLFNQALNFLKSYAHSSIVLCTATQPELDYVRLKLEIEPEAEMIHNLDHV----- 466 P+ +LFN +NFL +++I+LCTATQP D +K ++ + D V Sbjct: 412 PIEVTALFNLTMNFLNKVMNTTIILCTATQPAYDSTAIKHKLSYGGKYGEATDMVELTHD 471 Query: 467 -IEAFRRVEIVDRATNEHFDNDTLTEFVITQMREVSSVLVILNTKSVVQALYRSLNERNL 525 E F R E+ R +E N L++ V + S+LVI NTK V Y SL E+ Sbjct: 472 EKEVFSRTEL--RKFDETNQNSKLSDLVDFVLENDESILVIFNTKKTVDRFY-SLLEKLT 528 Query: 526 SVPIYHLSTSMCAAHRNQILDKVKALLEDKEPVICISTQLIEAGVDVSFQCVIRSLAGLD 585 PIY LST+MCA HR I+ ++K LED P+ICISTQLIEAGVDV F VIRS AG+D Sbjct: 529 DRPIYQLSTNMCAQHRLDIISEIKQGLEDGIPLICISTQLIEAGVDVDFNHVIRSYAGID 588 Query: 586 SIAQAAGRCNRHGEDLIRQVYVIDHI--EENLKHLKEIKIGKEISRKILIDLSR--DASL 641 SI QA+GRCNR G+ QV +I+ EEN+ LKEIK K+ + IL +S D SL Sbjct: 589 SIVQASGRCNREGKRDKGQVTLINLTSEEENISPLKEIKAKKDATEYILHKISSPIDTSL 648 Query: 642 HGGHILSIQAMEKYFKEFYTELATSLNYSIPKLGQEMTTLLSGPRKNNAYYQAYLSKHRA 701 +F+ +Y S++Y + G+ + LS +YQ + Sbjct: 649 LN---------RDFFEYYYANNQGSMDYPLEHDGESVYDYLSVN-----FYQK-----KV 689 Query: 702 ALPLFLLNSYKTAAENFQVIDNLTTTVVVPFGDGPEEGKDIIAELNGQQSIPD------L 755 L ++KTA +I+N T ++VP+ D E K +I E + P + Sbjct: 690 GFKGKLKQAFKTAGLKMNLINNETIGILVPYRDAAE--KLLILEELCKSDYPSEEDYRAI 747 Query: 756 TRLLRKAQQYTINIYSYEKDLLSKNGSLVPYLDGKILALKEGAYHPEYGLNLENDSPL 813 LL++ Q YT+N+ + + L + PYL+G+I L + Y + G+ LE+ S L Sbjct: 748 KALLKELQSYTVNVREHNQILEATK----PYLNGQIQILSDSYYDDKKGITLESASFL 801 >ref|ZP_00088989.1| COG1203: Predicted helicases [Azotobacter vinelandii] Length = 713 Score = 324 bits (831), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 247/809 (30%), Positives = 380/809 (46%), Gaps = 127/809 (15%) Query: 28 AEKYGKKLGIKYMAGLAGMLHDLGKYTEEFRNYIVQAVYHPEAPPSRGSVDHSTAGGKLL 87 AEK G G + +AG+AG+LHDLGKYT+EF+ I + VDH+T G L Sbjct: 6 AEKAGI-FGGQQLAGIAGLLHDLGKYTDEFQRRISGDLIR---------VDHATRGAMLA 55 Query: 88 FERFHRVPADLSNKEAHINKMILAEVVGNAILSHHSYLQDFLNPDSESNFLNRVQDKCLP 147 ER+ L ++ I HHS L + +P S R++ + LP Sbjct: 56 VERYG----------------ALGRLLAYGIAGHHSGLANGRDPGECSTLEERLKGQSLP 99 Query: 148 EFERAKDSFFELVMNETEFHLYVDKAVEELSDYLKVDSSSTTELKLMFLTKYVFSALIDA 207 + + NE + A+ EL +L FL + +FS L+DA Sbjct: 100 -------ALLDQWQNEIQL-----PAMSELGPLPIKPVRERQVFQLAFLARMLFSCLVDA 147 Query: 208 DRTNTRCF----EENQPDPSYNPQQLFSAYYTKLMTKIDSFHNHKHAHSAINQLRQGMSE 263 D +T + E+ S P L + F A S +N++R + Sbjct: 148 DFLDTEAYYDRIEQRPSRRSARPS--LPHLQQALNVHLAGFR----ADSPVNRIRADILG 201 Query: 264 QCEQFAAEPSGIYTLSIPTGGGKTLASLRYXXXXXXXXXXXXIIYVVPYTTIIEQNANEI 323 Q A + G+++L++PTGGGKTLASL + IIYV+P+T+I+EQNA Sbjct: 202 HVRQQAVQEPGLFSLTVPTGGGKTLASLAFALDHAIRHGLRRIIYVIPFTSIVEQNAAVF 261 Query: 324 RSILKD--DEHILEHHSNVVEEETQDDEHEDGSLSLRQKLKLAKDNWDAPIIFTTMVQFL 381 R L + ++ +LEHHS + QD + D KL+LA +NWDAPII TT VQF Sbjct: 262 RKALGEFGEQAVLEHHSAFSDNRAQDRQARD-------KLRLAMENWDAPIIVTTAVQFF 314 Query: 382 NVFYADGSRNIRRLHNLSESVIVFDEVQKVPVR----CVSLFNQ-ALNFLKSYAHSSIVL 436 YAD R+LHN++ SVI+ DE Q +P+R CV+ ++ ALN+ S VL Sbjct: 315 ESLYADRPSRCRKLHNIAGSVIILDEAQTLPLRLLRPCVTAIDELALNY-----RCSPVL 369 Query: 437 CTATQPELDYVRLKLEIEPEAEMIHNLDHVIEAFRRVEIVDRATNEHFDNDTLTEFVIT- 495 CTATQP L + ++ E+ + + + RV++ L++ + Sbjct: 370 CTATQPALQAPEFRGGLQGVRELAPQPEQLFQRLVRVQVRQVG--------ILSDAALQR 421 Query: 496 QMREVSSVLVILNTKSVVQALYRSLNERNLSVPIYHLSTSMCAAHRNQILDKVKALLEDK 555 QM E VL I+N + +ALY S+ + + HL+T MCA HR+Q+L +V+ L D Sbjct: 422 QMAEREQVLCIVNNRRHARALYESIAGSDGA---RHLTTLMCARHRSQVLAEVRQRLHDG 478 Query: 556 EPVICISTQLIEAGVDVSFQCVIRSLAGLDSIAQAAGRCNRHGEDLIRQVYVIDHIEEN- 614 +P ++T LIEAGVDV F V+R+ AGLDSIAQAAGRCNR G + V+ EN Sbjct: 479 QPCRLVATSLIEAGVDVDFPTVLRAEAGLDSIAQAAGRCNREGLRALEASEVLVFQAENP 538 Query: 615 -LKHLKEIKIGKEISRKILIDLSRDASLHGGHILSIQAMEKYFKEFYTELATSLNYSIPK 673 K ++++ + +R++L + + G L+ + +YF+ Y + Sbjct: 539 DWKAPQDLQQFAQAAREVLRNTT-------GDPLAPGVITRYFQHLYWQ----------- 580 Query: 674 LGQEMTTLLSGPRKNNA--YYQAYLSKHRAALPLFLLNSYKTAAENFQVIDNLTTTVVVP 731 G R+ +A SK +P +L A F++ID++ V++P Sbjct: 581 ---------KGDRELDAKDLLAQIESKRLEGIPFEML------AREFRMIDSMQCPVIIP 625 Query: 732 FGDGPEEGKDIIAELNGQQSIPDLTRLLRKAQQYTINIYSYEKDLLSKNGSLVP-----Y 786 F D +E + +G L R+ Q Y + + D L K G++ P Y Sbjct: 626 FDDEAQESLRALEFADG------CGELARQLQPYIVQLPRQGYDALLKAGAIQPVAPERY 679 Query: 787 LDGKILALKEGAYHPEYGLNLENDSPLDM 815 + + + YH +YGL+ +N + +D+ Sbjct: 680 AEQFMQLVNPDLYHAQYGLHWDNPTFMDV 708 >ref|NP_269633.1| conserved hypothetical protein [Streptococcus pyogenes] gb|AAK34354.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS] Length = 802 Score = 302 bits (773), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 263/847 (31%), Positives = 407/847 (48%), Gaps = 91/847 (10%) Query: 4 IAHIRESDMKVQTVTEHLLEVRTLAEKYGKKLGIKYMAGLAGMLHDLGKYTEEFRNYIVQ 63 +AH K Q++ EHL V + + +G + L G+ HDLGK F++ ++ Sbjct: 5 LAHYDCKKDKKQSLDEHLWHVACSSRQEASIIGQGDVLFLIGLYHDLGKADRTFQDKLLN 64 Query: 64 AVYHPEAPPSRGSVDHSTAGGKLLFERFHRVPADLSNKEAHIN-KMILAEVVGNAILSHH 122 P+R VDHS AG K L + L N+ N +M E+VG I +HH Sbjct: 65 -------NPNR-HVDHSYAGAKYLCSI---IGPHLKNRGVDKNERMTFNEMVGYVISAHH 113 Query: 123 S-YLQDFLNPDSE----SNFLNRVQDKCLPEFERAKDSFFELVMNETEFHLYVDKAVEEL 177 Y + D+E + F NR+ ++ L + +D + E + Y K + EL Sbjct: 114 GMYDLCYYFDDAEYYGFNKFKNRI-NRDLDGYHYHEDIKGYALKLEKKLCDYGYKDLREL 172 Query: 178 SD-----YLKVDSSSTTELKLMF------LTKYVFSALIDADRTNTRCFEENQPDPSYNP 226 D Y + SS + K + + + S L +AD +T + P Sbjct: 173 IDKAFDNYQQAMSSLNWQDKSEWDYYQSCMVRLYLSLLKNADILDTVNAYGLKISPMDKT 232 Query: 227 QQLF--SAYYTKLMTKIDSFHNHKHAHSAINQLRQGMSEQCEQFAAEPS-GIYTLSIPTG 283 ++ F +Y + K SF ++ +N +R ++E+ ++ S GIY L +PTG Sbjct: 233 ERSFLKHSYLAAIEQKYASF---GQPNNQLNTIRTEIAERVKERGKRDSKGIYRLDLPTG 289 Query: 284 GGKTLASLRYXXXXXXXXXXXXIIYVVPYTTIIEQNANEIRSILKDDEHILEHHSNVVEE 343 GKT S+RY Y+ P+ +++EQNA+EIR + D +LEHHSNVV++ Sbjct: 290 AGKTNLSMRYAFHQLVHHDKSRFFYITPFLSVLEQNASEIRKV-TGDLGVLEHHSNVVKQ 348 Query: 344 ETQDDEHEDGSLSLRQKLKLAKDNWDAPIIFTTMVQFLNVFYADGSRNIRRLHNLSESVI 403 +DD+ +D LS D+WD+ ++ T+MVQF + S N+RR +L SV+ Sbjct: 349 ANEDDDDKDSLLS-----AYLSDSWDSQVVLTSMVQFFQTLFKTKSANLRRFSSLINSVV 403 Query: 404 VFDEVQKVPVRCVSLFNQALNFLKSYAHSSIVLCTATQPELDYVRLKLEIEPEAEMIHNL 463 + DEVQ +P+ +LFN +NFL ++IVLCTATQP D EI+ NL Sbjct: 404 ILDEVQSLPIEVTTLFNLTMNFLNKVMDTTIVLCTATQPAYD----SSEIDHRICYGGNL 459 Query: 464 DHVIE----AFRRVEIVDRATNEHFDNDT----LTEFVITQMREVSSVLVILNTKSVVQA 515 + E +I R FD+ LT+ + + E +SVL I NTK V Sbjct: 460 GELAEIVELTIEEKQIFSRTELRKFDDSDQKVHLTDVINLILGEENSVLAIFNTKKTVHN 519 Query: 516 LYRSLNERNLSVPIYHLSTSMCAAHRNQILDKVKALLEDKEPVICISTQLIEAGVDVSFQ 575 Y L + P+Y LST+MCA HR ++ K+K L++ P+ICISTQLIEAGVDV F Sbjct: 520 CYTMLKDMT-DRPVYQLSTNMCAQHRLDLIAKIKTELQNNIPIICISTQLIEAGVDVDFH 578 Query: 576 CVIRSLAGLDSIAQAAGRCNRHGEDLIRQVYVID--HIEENLKHLKEIKIGKEISRKILI 633 VIRS +G+DSI QAAGRCNR G+ QV +++ + EEN+ L EIK KE + IL Sbjct: 579 RVIRSYSGIDSIVQAAGRCNREGKRDKGQVTLVNLTNEEENISRLTEIKTKKEATESILH 638 Query: 634 DLSRDASLHGGHILSIQAMEKYFKEFYTELATSLNYSIPKLGQEMTTLLSGPRKNNAYYQ 693 + G + I + + F E+Y L+ P ++N Sbjct: 639 KI--------GSPIDISTLNRDFFEYYY--------------ANNQGLMDYPLEDNLSIY 676 Query: 694 AYLSK--HRAALPLF---LLNSYKTAAENFQVIDNLTTTVVVPFGDGPEEGKDI----IA 744 YLS ++ A F L ++KTA +I+N ++VP+G+ ++ + ++ Sbjct: 677 DYLSLNIYQTANKKFKGKLKQAFKTAGAKMNLINNDMIGILVPYGEAEKKLAYLEELGVS 736 Query: 745 ELNGQQSIPDLTRLLRKAQQYTINIYSYEKDLLSKNGSLVPYLDGKILALKEGAYHPEYG 804 + + LL++ Q +T+N+ E D L + + YL+G+IL L Y E G Sbjct: 737 HFLSAKDYQTIKSLLKELQPFTVNV--RENDPLFE--TTKSYLNGQILVLTSEYYDTERG 792 Query: 805 LNLENDS 811 + ++ S Sbjct: 793 VKYDSAS 799 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.134 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,149,323,201 Number of extensions: 47202230 Number of successful extensions: 141347 Number of sequences better than 1.0e-05: 53 Number of HSP's gapped: 141208 Number of HSP's successfully gapped: 55 Length of query: 818 Length of database: 757,237,578 Length adjustment: 134 Effective length of query: 684 Effective length of database: 393,414,312 Effective search space: 269095389408 Effective search space used: 269095389408 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)