BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0494.0004.p (218 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241206.1| BH0340~unknown [Bacillus halodurans] >gi|253817... 253 3e-66 ref|ZP_00098223.1| COG1468: RecB family exonuclease [Desulfitoba... 242 4e-63 ref|NP_269629.1| conserved hypothetical protein [Streptococcus p... 224 1e-57 ref|NP_722082.1| conserved hypothetical protein [Streptococcus m... 195 7e-49 ref|NP_662022.1| conserved hypothetical protein [Chlorobium tepi... 166 4e-40 >ref|NP_241206.1| BH0340~unknown [Bacillus halodurans] pir||D83692 hypothetical protein BH0340 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04059.1| BH0340~unknown [Bacillus halodurans] Length = 174 Score = 253 bits (645), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 111/174 (63%), Positives = 140/174 (80%) Query: 45 LHRNADQPLIREKRVDKIIVRAMPVKSRELNISGICDVVEFIRDDSGVEINGADGKYAAY 104 +H+ ADQP ++EKR K+ VRAMP++S+ L ISGICDVVEF++D G+E++G G Y A+ Sbjct: 1 MHKKADQPFMKEKRGSKLTVRAMPIQSKNLQISGICDVVEFVQDSEGIELSGVSGSYKAF 60 Query: 105 PVEYKRGKPKREDEDILQLAAQAMCLEEMLLCEVSTGYIFYNEIKHRIEVPLTAELKANV 164 PVEYKRGKPK+ DEDI+QL AQAMCLEEML+C + GY+FYNEIKHR+EVP+T L+ V Sbjct: 61 PVEYKRGKPKKGDEDIVQLVAQAMCLEEMLVCRIDKGYLFYNEIKHRVEVPITDALRDKV 120 Query: 165 KAIVEVMQSYYHRRHTPKVKTGPFCKSCSLQHICLPKLMNKQSVKSYVEGKIRE 218 + + M YY RHTPKVKTGPFC +CSLQ ICLPKLMNK+SVK Y+EG++ E Sbjct: 121 VQMAKEMHHYYENRHTPKVKTGPFCNNCSLQSICLPKLMNKRSVKRYIEGRLSE 174 >ref|ZP_00098223.1| COG1468: RecB family exonuclease [Desulfitobacterium hafniense] Length = 223 Score = 242 bits (618), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 118/218 (54%), Positives = 148/218 (67%) Query: 1 MEYDDEDELMLSGIQHFHFCKRQWALIHIEQQWEENVRTIEGQHLHRNADQPLIREKRVD 60 MEY ++D L+LSGIQH+ FCKRQWALIHIEQQW+EN RTIEG LH I+EKR Sbjct: 1 MEYQEDDFLLLSGIQHYVFCKRQWALIHIEQQWQENFRTIEGAILHEKTHDSTIKEKRGA 60 Query: 61 KIIVRAMPVKSRELNISGICDVVEFIRDDSGVEINGADGKYAAYPVEYKRGKPKREDEDI 120 II R M + SR L I+G CDVVEF + GV + G +G Y PVEYKRGKPK+++ D+ Sbjct: 61 LIISRGMGIFSRTLGITGACDVVEFHKSRDGVTLYGREGTYQPVPVEYKRGKPKQDNADV 120 Query: 121 LQLAAQAMCLEEMLLCEVSTGYIFYNEIKHRIEVPLTAELKANVKAIVEVMQSYYHRRHT 180 LQL AQAMCLEEMLLC + G+++Y E + R +V L E++ VK I + M Y +R+T Sbjct: 121 LQLCAQAMCLEEMLLCTIPEGFLYYGEPRRRTKVILDEEIREEVKRICQEMHELYAKRYT 180 Query: 181 PKVKTGPFCKSCSLQHICLPKLMNKQSVKSYVEGKIRE 218 PKVKT C++CSL ICLPKL S Y++ I E Sbjct: 181 PKVKTTKACRACSLSEICLPKLCKNPSALDYMKKMIAE 218 >ref|NP_269629.1| conserved hypothetical protein [Streptococcus pyogenes] gb|AAK34350.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS] Length = 224 Score = 224 bits (571), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 109/213 (51%), Positives = 141/213 (66%), Gaps = 1/213 (0%) Query: 1 MEYDDEDELMLSGIQHFHFCKRQWALIHIEQQWEENVRTIEGQHLHRNADQPLIREKRVD 60 M Y ++D LMLSGIQHF FCKRQWALIHIEQQW +N T GQ LH AD P I+EKR + Sbjct: 1 MVYAEDDYLMLSGIQHFQFCKRQWALIHIEQQWLDNEATAHGQVLHTKADNPYIKEKRKE 60 Query: 61 KIIVRAMPVKSRELNISGICDVVEFIRDDSGVEINGADGKYAAYPVEYKRGKPKREDEDI 120 ++ RAMP+ S EL +SGI DVVEF +DD GV + G GK+ VEYKRGKPK++ DI Sbjct: 61 LLVSRAMPISSAELGLSGIMDVVEFYKDDQGVSLRGKRGKWLPKVVEYKRGKPKKDTRDI 120 Query: 121 LQLAAQAMCLEEMLLCEVSTGYIFYNEIKHRIEVPLTAELKANVKAIVEVMQSYYHRRHT 180 +QL AQ MCLEE L C+++ G ++Y+ + R+ VP+T+ L+ VK + M Y + Sbjct: 121 VQLVAQTMCLEETLDCDINEGCLYYHSVNQRVIVPMTSALRQEVKELAAEMHEVYQSQML 180 Query: 181 PKVKTGPFCKSCSLQHICLPKLMNK-QSVKSYV 212 PK C+ CSL IC P+L K +SV Y+ Sbjct: 181 PKAAYFKNCQLCSLVDICKPRLSKKTRSVSRYI 213 >ref|NP_722082.1| conserved hypothetical protein [Streptococcus mutans UA159] gb|AAN59388.1| conserved hypothetical protein [Streptococcus mutans UA159] Length = 214 Score = 195 bits (495), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 100/205 (48%), Positives = 128/205 (62%), Gaps = 1/205 (0%) Query: 10 MLSGIQHFHFCKRQWALIHIEQQWEENVRTIEGQHLHRNADQPLIREKRVDKIIVRAMPV 69 MLSGIQHF FCKRQW LIHIEQQW EN T GQ LH+ AD P IREKR D I RAM V Sbjct: 1 MLSGIQHFQFCKRQWGLIHIEQQWAENEATAHGQILHQKADNPYIREKRKDIITSRAMHV 60 Query: 70 KSRELNISGICDVVEFIRDDSGVEINGADGKYAAYPVEYKRGKPKREDEDILQLAAQAMC 129 S+ L + GI DVVEF +D +GV + G GK+ VEYKRGKPKR+ DI+QL AQ +C Sbjct: 61 SSKTLGLYGILDVVEFHKDKNGVTLKGKRGKWLPRIVEYKRGKPKRDTRDIVQLVAQTIC 120 Query: 130 LEEMLLCEVSTGYIFYNEIKHRIEVPLTAELKANVKAIVEVMQSYYHRRHTPKVKTGPFC 189 LEE C + TG ++Y+ + + + +T L+ V + M YY + K + C Sbjct: 121 LEETFGCPIETGCLYYHSVNQKKVIEITEALRQEVFDLAGQMHYYYDNKIIDKAEYFKNC 180 Query: 190 KSCSLQHICLPKLMNK-QSVKSYVE 213 CSL IC P+L K ++V +Y++ Sbjct: 181 PLCSLVDICKPRLSKKSRNVANYIK 205 >ref|NP_662022.1| conserved hypothetical protein [Chlorobium tepidum TLS] gb|AAM72364.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 214 Score = 166 bits (419), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 88/217 (40%), Positives = 126/217 (58%), Gaps = 11/217 (5%) Query: 3 YDDEDELMLSGIQHFHFCKRQWALIHIEQQWEENVRTIEGQHLHRNADQPLIREKRVDKI 62 Y + D + LS +QH+ FC RQ ALIH+EQ W EN+ T EG+ +H AD + + K+ Sbjct: 2 YAETDFIALSALQHYVFCPRQCALIHLEQVWSENLYTAEGREMHERADSAVTSYREGVKV 61 Query: 63 IVRAMPVKSRELNISGICDVVEFIRDDSGVEINGADGKYAAYPVEYKRGKPKREDEDILQ 122 R++P++S L +SG+ DVVE+ R + G E +PVEYKRGKPK+ D D +Q Sbjct: 62 -TRSVPLRSAVLGVSGVADVVEWHRREGGFE---------PFPVEYKRGKPKKHDADKVQ 111 Query: 123 LAAQAMCLEEMLLCEVSTGYIFYNEIKHRIEVPLTAELKANVKAIVEVMQSYYHRRHTPK 182 L AQAMCLEEM C + +G +FY + R++V L++ A + + TP Sbjct: 112 LCAQAMCLEEMRSCAIPSGALFYGQTMRRLDVVFDEVLRSKTVAAAAGVHGLFSLGVTPH 171 Query: 183 VKTGPFCKSCSLQHICLPKLMNKQ-SVKSYVEGKIRE 218 + GP CK CSL CLP+++ + S K YV+ RE Sbjct: 172 PEFGPKCKLCSLVDECLPEVLERHGSAKRYVQKLYRE 208 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.136 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 322,353,375 Number of extensions: 12422474 Number of successful extensions: 25714 Number of sequences better than 1.0e-05: 22 Number of HSP's gapped: 25690 Number of HSP's successfully gapped: 22 Length of query: 218 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 97 Effective length of database: 428,710,599 Effective search space: 41584928103 Effective search space used: 41584928103 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)