BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0494.0003.p (343 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241207.1| BH0341~unknown conserved protein in others [Bac... 529 e-149 ref|ZP_00098222.1| COG1518: Uncharacterized protein predicted to... 427 e-118 ref|NP_644148.1| conserved hypothetical protein [Xanthomonas axo... 320 4e-86 ref|NP_900899.1| conserved hypothetical protein [Chromobacterium... 319 6e-86 ref|NP_269628.1| conserved hypothetical protein [Streptococcus p... 314 2e-84 >ref|NP_241207.1| BH0341~unknown conserved protein in others [Bacillus halodurans] pir||E83692 hypothetical protein BH0341 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04060.1| BH0341~unknown conserved protein in others [Bacillus halodurans] Length = 343 Score = 529 bits (1362), Expect = e-149, Method: Compositional matrix adjust. Identities = 249/343 (72%), Positives = 285/343 (83%) Query: 1 MKKLLNTLYITQPSVYLSLDGDNVVLLKEEEKLGRFPLHNLESIVTFGYTGASPALMGYC 60 MKKLLNTLY+TQP YLSLDGDNVVLLKE+EKLGR PLHNLE+IV FGYTGASPALMGYC Sbjct: 1 MKKLLNTLYVTQPDTYLSLDGDNVVLLKEQEKLGRLPLHNLEAIVGFGYTGASPALMGYC 60 Query: 61 ADSNISLLFLTMNGRYLARVTGQSRGNVVLRKKQYNLSEDEVRSAKIARNFIIGKIYNHK 120 A+ NIS+ FLT NGR+LARV G+SRGNVVLRK QY +SE++ S KIARNFI GK+YN K Sbjct: 61 AERNISITFLTKNGRFLARVVGESRGNVVLRKTQYRISENDQESTKIARNFITGKVYNSK 120 Query: 121 WMLERMTRDYPLRVNVELFKETSQQLSSLILEVRACEQLDRLRGLEGQAAATYYSQFNQM 180 WMLERMTR++PLRVNVE FK TSQ LS ++ E+R C+ L+ LRG EGQAA Y F+QM Sbjct: 121 WMLERMTREHPLRVNVEQFKATSQLLSVMMQEIRNCDSLESLRGWEGQAAINYNKVFDQM 180 Query: 181 ILQQKEDFYFHSRTRRPPLDNVNAMLSLAYTLLTHDTASALEAVGLDAYVGFLHRDRPGR 240 ILQQKE+F FH R+RRPP DNVNAMLS AYTLL +D A+ALE VGLDAYVGF+H+DRPGR Sbjct: 181 ILQQKEEFAFHGRSRRPPKDNVNAMLSFAYTLLANDVAAALETVGLDAYVGFMHQDRPGR 240 Query: 241 VSLALDVMEELRGVFADKFVLTLINKKLISKADFLKKENGAVIMTDEARKKFLAAWQSKK 300 SLALD+MEELRG++AD+FVL+LIN+K ++ F KKENGAV+MTDEARK FL AWQ+KK Sbjct: 241 ASLALDLMEELRGLYADRFVLSLINRKEMTADGFYKKENGAVLMTDEARKTFLKAWQTKK 300 Query: 301 QETITHPYLGEKISWGLVPXXXXXXXXXXXXNDLDEYPPFLWK 343 QE ITHPYLGEK+SWGLVP DLDEYPPFLWK Sbjct: 301 QEKITHPYLGEKMSWGLVPYVQALLLARFLRGDLDEYPPFLWK 343 >ref|ZP_00098222.1| COG1518: Uncharacterized protein predicted to be involved in DNA repair [Desulfitobacterium hafniense] Length = 343 Score = 427 bits (1097), Expect = e-118, Method: Compositional matrix adjust. Identities = 205/343 (59%), Positives = 260/343 (75%) Query: 1 MKKLLNTLYITQPSVYLSLDGDNVVLLKEEEKLGRFPLHNLESIVTFGYTGASPALMGYC 60 M+KLLNTLY+T P+ YLSLDG+N+V+LK++ + R PLHNLESI+ FGYTGASPALMG C Sbjct: 1 MRKLLNTLYVTSPNTYLSLDGENIVILKDDVEALRVPLHNLESIIAFGYTGASPALMGAC 60 Query: 61 ADSNISLLFLTMNGRYLARVTGQSRGNVVLRKKQYNLSEDEVRSAKIARNFIIGKIYNHK 120 A NISL F+ NG++L RV G+ RGNV LRK QY LS+DE S +IA++FI+GK+YN + Sbjct: 61 AKRNISLSFMKSNGKFLGRVVGEVRGNVTLRKAQYRLSDDEATSHRIAKSFILGKVYNSR 120 Query: 121 WMLERMTRDYPLRVNVELFKETSQQLSSLILEVRACEQLDRLRGLEGQAAATYYSQFNQM 180 W++ER TRD+ R++VE K Q L++ + V + LD+LRG+EG+AAA Y+ + + Sbjct: 121 WVVERATRDHGARLDVEKLKGVCQTLANALRLVENSKDLDQLRGVEGEAAAQYFRVLDDL 180 Query: 181 ILQQKEDFYFHSRTRRPPLDNVNAMLSLAYTLLTHDTASALEAVGLDAYVGFLHRDRPGR 240 ILQQKEDFYF R +RPPLDNVNAMLS YTLL HD A+ALE VGLD YVGFLHRDRPGR Sbjct: 181 ILQQKEDFYFKCRNKRPPLDNVNAMLSFIYTLLAHDAAAALETVGLDPYVGFLHRDRPGR 240 Query: 241 VSLALDVMEELRGVFADKFVLTLINKKLISKADFLKKENGAVIMTDEARKKFLAAWQSKK 300 +SLALD+MEELR VFAD+FVL+LIN++ ++ + F + ENGAV+M D+ R+ L AWQS+K Sbjct: 241 ISLALDLMEELRAVFADRFVLSLINRREVNPSGFTRMENGAVVMDDDTRRDILKAWQSRK 300 Query: 301 QETITHPYLGEKISWGLVPXXXXXXXXXXXXNDLDEYPPFLWK 343 QE I HP+L EK+ WGLVP DLD YP F+WK Sbjct: 301 QEEIKHPFLQEKMEWGLVPYAQAMLLARFIRGDLDGYPAFMWK 343 >ref|NP_644148.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] gb|AAM38684.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 346 Score = 320 bits (819), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 160/344 (46%), Positives = 218/344 (63%), Gaps = 1/344 (0%) Query: 1 MKKLLNTLYITQPSVYLSLDGDNVVLLKEEEKLGRFPLHNLESIVTFGYTGASPALMGYC 60 M++ LNTLY+T +L DG NVVL E ++ R P+H LESIV G G SP L+G+C Sbjct: 3 MRRQLNTLYVTTDGAWLHKDGANVVLNVERQERTRLPVHMLESIVCIGRVGVSPQLLGFC 62 Query: 61 ADSNISLLFLTMNGRYLARVTGQSRGNVVLRKKQYNLSEDEVRSAKIARNFIIGKIYNHK 120 A+ IS+ +LT GR+LARV G GNV+LR++QY S+D VR A I R+ + GKI+N + Sbjct: 63 AEQGISICYLTAQGRFLARVEGPVSGNVLLRREQYRCSDDPVRCAAIVRHMLAGKIHNQR 122 Query: 121 WMLERMTRDYPLR-VNVELFKETSQQLSSLILEVRACEQLDRLRGLEGQAAATYYSQFNQ 179 +L R RD+ R +++ F+ ++L + + +D LRGLEG+AA +Y+ F Q Sbjct: 123 AVLARGWRDHGDRMIDIPAFQHALKRLKRIPQRLLIETSVDVLRGLEGEAAQSYFGVFGQ 182 Query: 180 MILQQKEDFYFHSRTRRPPLDNVNAMLSLAYTLLTHDTASALEAVGLDAYVGFLHRDRPG 239 ++ + F R RRPP D NA+LS YTLLTHD SALE VGLD VGFLHRDRPG Sbjct: 183 LVRTESPLLRFGGRNRRPPRDAFNALLSFLYTLLTHDCRSALETVGLDPAVGFLHRDRPG 242 Query: 240 RVSLALDVMEELRGVFADKFVLTLINKKLISKADFLKKENGAVIMTDEARKKFLAAWQSK 299 R SLALD+ EE R + ++ L+LIN++ +++ DF +NGAV++ D+ARK L A+Q + Sbjct: 243 RPSLALDLAEEFRPLLGERLALSLINRRQLNQRDFQVFDNGAVLLKDDARKTVLIAYQER 302 Query: 300 KQETITHPYLGEKISWGLVPXXXXXXXXXXXXNDLDEYPPFLWK 343 K+E + H LGEKI GL+P DLD YP F WK Sbjct: 303 KREQLQHALLGEKIDIGLLPFVQAQLMARHLRGDLDGYPSFFWK 346 >ref|NP_900899.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] gb|AAQ58904.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 346 Score = 319 bits (817), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 158/346 (45%), Positives = 221/346 (63%), Gaps = 3/346 (0%) Query: 1 MKKLLNTLYITQPSVYLSLDGDNVVLLKEEEKLGRFPLHNLESIVTFGYTGASPALMGYC 60 M++ LNT+Y+T +L DG+N+V+ E + R P+H LE +V FG SP LMG+C Sbjct: 1 MRRQLNTVYVTTEGAWLRKDGENLVMEVEGSERARLPVHMLEGLVCFGRVLVSPPLMGFC 60 Query: 61 ADSNISLLFLTMNGRYLARVTGQSRGNVVLRKKQYNLSEDEVRSAKIARNFIIGKIYNHK 120 A+ I + +L+ NGR+LARV G GNV+LR+ QY S+D SA +AR+ ++GK++N + Sbjct: 61 AERGIVISYLSPNGRFLARVEGPVSGNVLLRRAQYRASDDGPASASLARHLLLGKLHNQR 120 Query: 121 WMLERMTRDYPLRVNVELFKETSQ---QLSSLILEVRACEQLDRLRGLEGQAAATYYSQF 177 +L R RD+ + E E Q +LS L ++ + LD LRG+EG+AA Y++ F Sbjct: 121 AVLSRALRDHGEGLKNEARSELEQARKRLSRLADKLWHVDDLDALRGVEGEAAQNYFAVF 180 Query: 178 NQMILQQKEDFYFHSRTRRPPLDNVNAMLSLAYTLLTHDTASALEAVGLDAYVGFLHRDR 237 ++ F R+RRPP D VNA+LS YTLLTHD SALE+VGLD VGFLHRDR Sbjct: 181 PHLLRMDDPALRFAGRSRRPPRDPVNAVLSFLYTLLTHDCRSALESVGLDPTVGFLHRDR 240 Query: 238 PGRVSLALDVMEELRGVFADKFVLTLINKKLISKADFLKKENGAVIMTDEARKKFLAAWQ 297 PGR SLALD++EE R V AD+ L+L N++ ++ DF ++NG V+++DEARK L A+Q Sbjct: 241 PGRPSLALDLVEEFRPVLADRLALSLFNRRQLAAKDFRGQDNGGVLLSDEARKTVLVAYQ 300 Query: 298 SKKQETITHPYLGEKISWGLVPXXXXXXXXXXXXNDLDEYPPFLWK 343 +K++++ H YL EK+ GL P DLD YPPFLWK Sbjct: 301 ERKRDSLLHAYLDEKVELGLFPAIQAQLLARHLRGDLDAYPPFLWK 346 >ref|NP_269628.1| conserved hypothetical protein [Streptococcus pyogenes] gb|AAK34349.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS] Length = 341 Score = 314 bits (805), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 153/341 (44%), Positives = 217/341 (63%), Gaps = 1/341 (0%) Query: 1 MKKLLNTLYITQPSVYLSLDGDNVVLLKEEEKLGRFPLHNLESIVTFGYTGASPALMGYC 60 MKKLLNTLY+TQ Y++ +GDN+V+ +E + L RFP ++ IV F Y G S AL+ C Sbjct: 1 MKKLLNTLYLTQEDFYVTKEGDNIVIKQEGKVLKRFPFRIIDGIVCFSYLGVSSALVKLC 60 Query: 61 ADSNISLLFLTMNGRYLARVTGQSRGNVVLRKKQYNLSEDEVRSAKIARNFIIGKIYNHK 120 ++ I+L F T GR+ R G + GNV+LR++ Y LS+ E S + A+ FI+ KI N + Sbjct: 61 TENQINLSFHTPQGRFCGRYIGSTNGNVLLRREHYRLSDRE-ESLEYAKRFILAKISNSR 119 Query: 121 WMLERMTRDYPLRVNVELFKETSQQLSSLILEVRACEQLDRLRGLEGQAAATYYSQFNQM 180 L R RD+ +++ +LF+ + +L + V+A + D LRG+EGQAA Y+ FN + Sbjct: 120 KYLLRFKRDHRQQIDTKLFEAVNDELIWALEMVQAADNKDSLRGIEGQAANQYFRIFNDL 179 Query: 181 ILQQKEDFYFHSRTRRPPLDNVNAMLSLAYTLLTHDTASALEAVGLDAYVGFLHRDRPGR 240 +L K+ FYF R++RPPLD VNA+LS Y+LLT + SALEAVGLD+YVGF H DRPGR Sbjct: 180 VLTDKKTFYFQGRSKRPPLDCVNALLSFGYSLLTFECQSALEAVGLDSYVGFFHTDRPGR 239 Query: 241 VSLALDVMEELRGVFADKFVLTLINKKLISKADFLKKENGAVIMTDEARKKFLAAWQSKK 300 SLALD++EE R D+FV +LINK + K F KENG++++T+ R F+ WQ +K Sbjct: 240 ASLALDLVEEFRSYIVDRFVFSLINKGQLQKKHFEVKENGSILLTENGRAIFIDLWQKRK 299 Query: 301 QETITHPYLGEKISWGLVPXXXXXXXXXXXXNDLDEYPPFL 341 + HP+ EK+ L+P DL+ YPPF+ Sbjct: 300 HTEVEHPFTKEKVKLMLLPYVQAQLLAKAIRGDLESYPPFM 340 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 469,944,432 Number of extensions: 17819712 Number of successful extensions: 42477 Number of sequences better than 1.0e-05: 74 Number of HSP's gapped: 42372 Number of HSP's successfully gapped: 74 Length of query: 343 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 217 Effective length of database: 415,135,104 Effective search space: 90084317568 Effective search space used: 90084317568 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)