BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0494.0002.p
         (96 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_241208.1| BH0342~unknown conserved protein in others [Bac...   138   4e-32
ref|ZP_00098221.1| COG1343: Uncharacterized protein predicted to...   129   2e-29
ref|ZP_00014577.1| COG1343: Uncharacterized protein predicted to...   121   6e-27
ref|NP_662020.1| conserved hypothetical protein [Chlorobium tepi...   115   2e-25
ref|ZP_00044933.1| COG1343: Uncharacterized protein predicted to...   114   7e-25

>ref|NP_241208.1| BH0342~unknown conserved protein in others [Bacillus halodurans]
 pir||F83692 hypothetical protein BH0342 [imported] - Bacillus halodurans
          (strain C-125)
 dbj|BAB04061.1| BH0342~unknown conserved protein in others [Bacillus halodurans]
          Length = 96

 Score =  138 bits (347), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/96 (65%), Positives = 78/96 (81%)

Query: 1  MLVVITYDVSTLSGEGQSRLRKVSKICQNYGQRVQNSVFECVVDAAQFAELKIKLKTIID 60
          MLV+ITYDV T S  G  RLRKV+K CQNYGQRVQNSVFEC+VD+ Q   LK++L ++ID
Sbjct: 1  MLVLITYDVQTSSMGGTKRLRKVAKACQNYGQRVQNSVFECIVDSTQLTSLKLELTSLID 60

Query: 61 DDEDSIRFYQLGNNHKNKVEHVGIKKSIDLEGPLIL 96
          +++DS+R Y+LGNN+K KVEH+G K SIDLE PLI 
Sbjct: 61 EEKDSLRIYRLGNNYKTKVEHIGAKPSIDLEDPLIF 96


>ref|ZP_00098221.1| COG1343: Uncharacterized protein predicted to be involved in DNA
          repair [Desulfitobacterium hafniense]
          Length = 99

 Score =  129 bits (324), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 79/96 (82%)

Query: 1  MLVVITYDVSTLSGEGQSRLRKVSKICQNYGQRVQNSVFECVVDAAQFAELKIKLKTIID 60
          +LV+ITYDV+T +  G+ RLR+V+K C NYGQRVQNSVFECV+DAA+F E++ KL+ IID
Sbjct: 4  ILVLITYDVNTQTAAGRKRLRQVAKQCVNYGQRVQNSVFECVLDAAKFREVQHKLEQIID 63

Query: 61 DDEDSIRFYQLGNNHKNKVEHVGIKKSIDLEGPLIL 96
           + DS+RFY LGNN+KNKVEH+G K S ++E  LI+
Sbjct: 64 TETDSLRFYMLGNNYKNKVEHIGAKPSFNVEDTLII 99


>ref|ZP_00014577.1| COG1343: Uncharacterized protein predicted to be involved in DNA
          repair [Rhodospirillum rubrum]
          Length = 96

 Score =  121 bits (303), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 53/96 (55%), Positives = 74/96 (77%)

Query: 1  MLVVITYDVSTLSGEGQSRLRKVSKICQNYGQRVQNSVFECVVDAAQFAELKIKLKTIID 60
          M++++TYDV+T+   G+ RLR+V+K CQ+YGQRVQNSVFE  VD A++  LK +L+ IID
Sbjct: 1  MMILVTYDVNTVEPGGRRRLRQVAKACQDYGQRVQNSVFEVEVDPARWVALKARLEAIID 60

Query: 61 DDEDSIRFYQLGNNHKNKVEHVGIKKSIDLEGPLIL 96
             DS+R+Y LG N + +V+HVG K ++DL GPLIL
Sbjct: 61 PALDSLRYYDLGANWQRRVDHVGAKPAVDLHGPLIL 96


>ref|NP_662020.1| conserved hypothetical protein [Chlorobium tepidum TLS]
 gb|AAM72362.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 96

 Score =  115 bits (289), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/96 (57%), Positives = 72/96 (75%)

Query: 1  MLVVITYDVSTLSGEGQSRLRKVSKICQNYGQRVQNSVFECVVDAAQFAELKIKLKTIID 60
          MLV++TYDV+T +  G+ RLR+++K CQNYGQRVQ SVFEC VD AQ+ +L+ KL   +D
Sbjct: 1  MLVLVTYDVNTETPAGRRRLRRIAKTCQNYGQRVQFSVFECNVDPAQWVKLRSKLLNEMD 60

Query: 61 DDEDSIRFYQLGNNHKNKVEHVGIKKSIDLEGPLIL 96
             DS+RFY LG+N + +VEH G K+  DLEG LIL
Sbjct: 61 PKLDSLRFYFLGSNWQGRVEHEGAKEPRDLEGTLIL 96


>ref|ZP_00044933.1| COG1343: Uncharacterized protein predicted to be involved in DNA
          repair [Magnetococcus sp. MC-1]
          Length = 95

 Score =  114 bits (285), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 53/96 (55%), Positives = 73/96 (76%), Gaps = 1/96 (1%)

Query: 1  MLVVITYDVSTLSGEGQSRLRKVSKICQNYGQRVQNSVFECVVDAAQFAELKIKLKTIID 60
          MLV+I+YDV++ SG G  RLR+++K CQ++GQRVQ SVFEC++  AQ++ L+ +L   +D
Sbjct: 1  MLVLISYDVASGSG-GAKRLRRIAKACQDHGQRVQYSVFECLITPAQWSMLRQRLLDEMD 59

Query: 61 DDEDSIRFYQLGNNHKNKVEHVGIKKSIDLEGPLIL 96
           D+DS+RFY LG N +N+VEHVG K   D E PLIL
Sbjct: 60 ADQDSLRFYFLGANWRNRVEHVGAKAGYDPEAPLIL 95


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.137    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 130,769,621
Number of extensions: 4308114
Number of successful extensions: 12950
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 12949
Number of HSP's successfully gapped: 30
Length of query: 96
Length of database: 757,237,578
Length adjustment: 64
Effective length of query: 32
Effective length of database: 583,471,242
Effective search space: 18671079744
Effective search space used: 18671079744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)