BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0493.0028.p (224 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_782510.1| sporulation initiation inhibitor soj family pro... 201 1e-50 ref|NP_816894.1| ATPase, ParA family [Enterococcus faecalis V583... 149 4e-35 ref|NP_244926.1| centromere-like function involved in forespore ... 147 2e-34 ref|NP_624291.1| ATPases involved in chromosome partitioning [Th... 145 6e-34 ref|ZP_00035792.1| COG1192: ATPases involved in chromosome parti... 144 2e-33 >ref|NP_782510.1| sporulation initiation inhibitor soj family protein [Clostridium tetani E88] gb|AAO36447.1| sporulation initiation inhibitor soj family protein [Clostridium tetani E88] Length = 264 Score = 201 bits (510), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 105/225 (46%), Positives = 138/225 (61%), Gaps = 30/225 (13%) Query: 30 RTTVITIANQKGGTGKTTTAYNLAYALSNEGKKVLLVDFDPQGNLSMCFGIEQPDQLQLS 89 + VI+I NQKGG KT T NL YAL+ GKKVLL+DFDPQ +L++CFG + D ++ + Sbjct: 6 KNKVISIVNQKGGVAKTVTTLNLGYALAEMGKKVLLIDFDPQSSLTVCFGYDNTDSIKTT 65 Query: 90 MFNVMNAIMSDEPLPPAEEYIHTHGNIDLIPSNIELSVAEI------------------- 130 ++N+M + ++ LP EEYI + GNID+IP ++ELS EI Sbjct: 66 IYNLMALAIEEKSLPKKEEYILSAGNIDIIPCSLELSAVEIALVNVMSRELVLKSIVDKV 125 Query: 131 -----------NPSLGLLTINALAASDSVLIPVNPQPWSATGLTQLLRIIVKVKKCINPR 179 +PSLG+LTINALAA DSV+IPV PQ SA GL LLR I++VKK INP Sbjct: 126 KTDYDYVIIDCSPSLGMLTINALAACDSVIIPVTPQYLSAKGLELLLRNIIRVKKRINPS 185 Query: 180 ISIEGILMTMCNTRTNLYKEAFRLVKVYYRETFHIFEVQIPLSVK 224 I ++GIL+TM R L KE +++ Y HIFE +IP SVK Sbjct: 186 IEVDGILLTMYAERMKLSKEVLSIIQEAYGSHIHIFESKIPTSVK 230 >ref|NP_816894.1| ATPase, ParA family [Enterococcus faecalis V583] gb|AAO82964.1| ATPase, ParA family [Enterococcus faecalis V583] Length = 253 Score = 149 bits (376), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 128/224 (57%), Gaps = 37/224 (16%) Query: 31 TTVITIANQKGGTGKTTTAYNLAYALSNEGKKVLLVDFDPQGNLSMCFGIEQPDQLQLSM 90 T +I++ANQKGG GKTTT NL L+N GKKVLL+D D QGN + G+ +PD Sbjct: 2 TRIISVANQKGGVGKTTTTVNLGACLANLGKKVLLIDIDAQGNATSGMGVPKPD----VA 57 Query: 91 FNVMNAIMSDEPLPPAEEYIHTHGNIDLIPSNIELSVAEIN------------------- 131 +V + ++++EP+ ++ + N+D++P+ I+L+ AEI Sbjct: 58 HDVYDVLVNEEPITSVVQHT-SRENLDIVPATIQLAGAEIELTSMMARESRLKLAIDEVR 116 Query: 132 -----------PSLGLLTINALAASDSVLIPVNPQPWSATGLTQLLRIIVKVKKCINPRI 180 PSLG LTINA ASDS+LIPV + ++ GL+QLL I V+K NP + Sbjct: 117 DMYDFVLIDCPPSLGHLTINAFTASDSILIPVQCEYYALEGLSQLLNTIRLVQKHFNPEL 176 Query: 181 SIEGILMTMCNTRTNLYKEAFRLVKVYYRETFHIFEVQIPLSVK 224 IEG+L+TM + RTNL E V+ Y+RE +++ IP +V+ Sbjct: 177 KIEGVLLTMYDARTNLGAEVVEEVRKYFRE--KVYDTIIPRNVR 218 >ref|NP_244926.1| centromere-like function involved in forespore chromosome partition [Bacillus halodurans] sp|Q9K5N0|SOJ_BACHD Sporulation initiation inhibitor protein soj pir||B84157 centromere-like function involved in forespore chromosome partition soj [imported] - Bacillus halodurans (strain C-125) dbj|BAB07777.1| centromere-like function involved in forespore chromosome partition [Bacillus halodurans] Length = 253 Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/224 (41%), Positives = 131/224 (58%), Gaps = 41/224 (18%) Query: 33 VITIANQKGGTGKTTTAYNLAYALSNEGKKVLLVDFDPQGNLSMCFGIEQPDQLQLSMFN 92 VI+IANQKGG GKTTTA NL+ L++ G++VLLVD DPQGN + GIE+ D + +++ Sbjct: 4 VISIANQKGGVGKTTTAVNLSACLAHLGQRVLLVDIDPQGNATSGVGIEKGD-IDECIYD 62 Query: 93 VMNAIMSDEPLPPAEEYIHTHG--NIDLIPSNIELSVAEIN------------------- 131 V+ + ++ I T N+D++PS I+LS AEI Sbjct: 63 VLVEDVD------TQDVIRTTNMENLDVLPSTIQLSGAEIELVSTISREVRLKRALDQVG 116 Query: 132 -----------PSLGLLTINALAASDSVLIPVNPQPWSATGLTQLLRIIVKVKKCINPRI 180 PSLGLLTINAL ASDSVLIPV + ++ GL+QLL + V+K +N + Sbjct: 117 RKYDFIFIDCPPSLGLLTINALTASDSVLIPVQCEYYALEGLSQLLNTVRLVQKHLNTDL 176 Query: 181 SIEGILMTMCNTRTNLYKEAFRLVKVYYRETFHIFEVQIPLSVK 224 +IEG+L+TM + RTNL + VK Y+RE +F+ IP +V+ Sbjct: 177 AIEGVLLTMLDARTNLGIQVIDEVKKYFRE--KVFDTIIPRNVR 218 >ref|NP_624291.1| ATPases involved in chromosome partitioning [Thermoanaerobacter tengcongensis] gb|AAM25895.1| ATPases involved in chromosome partitioning [Thermoanaerobacter tengcongensis] Length = 255 Score = 145 bits (366), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 129/222 (58%), Gaps = 37/222 (16%) Query: 33 VITIANQKGGTGKTTTAYNLAYALSNEGKKVLLVDFDPQGNLSMCFGIEQPDQLQLSMFN 92 VI +ANQKGG GKTTT NL YAL+ +GKKVL +D DPQ N++ FG+ P L + + Sbjct: 4 VIAVANQKGGVGKTTTVVNLGYALAVKGKKVLCIDIDPQSNMTSGFGV-NPASLDHTTYT 62 Query: 93 VMNAIMSDEPLPPAEEYIHTHGNIDLIPSNIELSVAEIN--------------------- 131 V+ + +E + A + +G +D++PS+I+L+ AEI Sbjct: 63 VL---IDEEEIENAILKLEQYG-LDIVPSSIQLAGAEIELVPMISREYRLKKAIESVKEK 118 Query: 132 ---------PSLGLLTINALAASDSVLIPVNPQPWSATGLTQLLRIIVKVKKCINPRISI 182 PSLGLLTINAL A+DSV++P+ + ++ GLTQL+ I VKK +NP + I Sbjct: 119 YDYILIDCPPSLGLLTINALTAADSVIVPIQCEYYALEGLTQLMNTINLVKKSLNPSLEI 178 Query: 183 EGILMTMCNTRTNLYKEAFRLVKVYYRETFHIFEVQIPLSVK 224 EG+++TM N RTNL + VK +++E ++ IP +++ Sbjct: 179 EGVVLTMFNARTNLSIQVVDEVKKFFKE--KVYRTIIPRNIR 218 >ref|ZP_00035792.1| COG1192: ATPases involved in chromosome partitioning [Enterococcus faecium] Length = 255 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 126/222 (56%), Gaps = 37/222 (16%) Query: 33 VITIANQKGGTGKTTTAYNLAYALSNEGKKVLLVDFDPQGNLSMCFGIEQPDQLQLSMFN 92 +I++ANQKGG GKTTT NL L++ GKKVLLVD D QGN + GI +PD + + Sbjct: 4 IISVANQKGGVGKTTTTVNLGACLASLGKKVLLVDMDAQGNATSGVGIRKPDVTR----D 59 Query: 93 VMNAIMSDEPLPPAEEYIHTHGNIDLIPSNIELSVAEIN--------------------- 131 + + ++++ P+ A I H N+ ++P+ ++L+ AEI Sbjct: 60 IYDVLVNELPIDEAT-LITEHENLSIVPATLQLAGAEIELTSMMARESRLKGSLAEVSSQ 118 Query: 132 ---------PSLGLLTINALAASDSVLIPVNPQPWSATGLTQLLRIIVKVKKCINPRISI 182 PSLG LTIN+ ASDS+LIPV + ++ GL+QLL + V+K NP + I Sbjct: 119 YDYILIDCPPSLGHLTINSFTASDSILIPVQCEYYALEGLSQLLNTVRLVQKHFNPELEI 178 Query: 183 EGILMTMCNTRTNLYKEAFRLVKVYYRETFHIFEVQIPLSVK 224 EG+L+TM + RTNL E V+ Y+RE ++E IP +++ Sbjct: 179 EGVLLTMYDARTNLGNEVVEEVRKYFRE--KVYETIIPRNIR 218 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 328,283,214 Number of extensions: 13255232 Number of successful extensions: 43985 Number of sequences better than 1.0e-05: 929 Number of HSP's gapped: 43532 Number of HSP's successfully gapped: 1041 Length of query: 224 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 103 Effective length of database: 428,710,599 Effective search space: 44157191697 Effective search space used: 44157191697 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)