BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0493.0025.p
         (401 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00096967.1| COG0534: Na+-driven multidrug efflux pump [De...    64   6e-09

>ref|ZP_00096967.1| COG0534: Na+-driven multidrug efflux pump [Desulfitobacterium
           hafniense]
          Length = 417

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 78/189 (41%), Gaps = 11/189 (5%)

Query: 128 NLTDEQLANFYVDWKGSFTEYLSNEQNLFPYTEKQIEIISQKMQKVTTPFLFKYDSGWEY 187
            ++ E+ ANFY       ++YLS E    P   +Q   I++K   V  PF + Y  G   
Sbjct: 136 EISPEEAANFYEQRTERLSDYLSQEYKDSPDAARQALAINEK---VKAPFYYIYGVGDSD 192

Query: 188 LKIGLLHTIHLFFMFLAFILCEGFSKNGSKGIDKVTLSTKESRRKLISYKLGAACVFSTI 247
               L   I L  M    I    FS +   G D +   T+  RR+L   KL +A + +T 
Sbjct: 193 TSEYLTMCIFLLVMLCTVIAAPIFSADYQSGADDILRCTRHGRRRLAVVKLSSAILLTTA 252

Query: 248 AYFVYIAVVLLFITAVYTLHGWDS-----SVQIGTITFYSMNQLKEGLLYIAMGYFSTLV 302
            + V I   +L   A +   GW+S      +    I+F  +   +  +L +  G  S L 
Sbjct: 253 IFAVCITAFILISHAAF---GWESLKTTLQLAFSAISFVPLTVGEANMLVVFSGLLSFLA 309

Query: 303 VTHLILFLS 311
                LFLS
Sbjct: 310 TVCFTLFLS 318


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.325    0.141    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 543,371,233
Number of extensions: 22372452
Number of successful extensions: 79170
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 79169
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 757,237,578
Length adjustment: 128
Effective length of query: 273
Effective length of database: 409,704,906
Effective search space: 111849439338
Effective search space used: 111849439338
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)