BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0493.0019.p (245 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAJ47830.1| unknown [environmental sequence] 229 5e-59 ref|NP_691697.1| sugar ABC transporter permease [Oceanobacillus ... 190 2e-47 ref|NP_694394.1| ABC transporter permease [Oceanobacillus iheyen... 169 7e-41 ref|NP_391138.1| similar to sugar permease [Bacillus subtilis] >... 168 8e-41 gb|EAI32315.1| unknown [environmental sequence] 164 1e-39 >gb|EAJ47830.1| unknown [environmental sequence] Length = 278 Score = 229 bits (583), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 112/245 (45%), Positives = 163/245 (66%) Query: 1 MASFKTNAEILNNSLGWPSSFRFSNYVMAFKIAPLSRFYINSVIVGIFGTXXXXXXXGMA 60 +AS KTNAE+L+N P F+F NY A + A L + INS+++ T M Sbjct: 34 LASLKTNAELLDNPFKLPKVFQFQNYSNAIQEAGLIQLIINSLVISTCATFLNILFASMC 93 Query: 61 GYVLARFQFRFKNLLMGAFSLSLLIPGAAMLQPLYLTVNTLGLYDKVIGLIIVYAGFGLP 120 + +AR F +KN+L + +L+P A++ P Y +N L LYD +GLI+VY GLP Sbjct: 94 AFAIARHIFWWKNVLFLMITAGILVPLNALIIPYYAIINFLNLYDTRLGLILVYCAVGLP 153 Query: 121 VSLYILSSYFLTIPKEMEESAYLDGASFIQTFFRIILPISKPGFGTAGVMQFLLCWNEFQ 180 VS +IL+ +F IPKE+EE++YLDG +F+ +FRI+LP++ PG TAG QF+LCWNEF Sbjct: 154 VSTFILTEFFKGIPKEIEEASYLDGCNFVSRYFRIMLPLALPGLATAGTFQFILCWNEFI 213 Query: 181 FAIILTTGNQSRTLPLALYYFKSQFASDYGVMFAATMVVIVPSILVYILLQKQVVSGLAA 240 +A++LT+ + RT+ + YF ++F SDY MFAA +V I+PSI V+IL Q++V++GL A Sbjct: 214 YAMLLTSSTEIRTIQFGISYFTNEFFSDYVGMFAAVVVSILPSITVFILFQERVITGLTA 273 Query: 241 GAVKG 245 G+VKG Sbjct: 274 GSVKG 278 >ref|NP_691697.1| sugar ABC transporter permease [Oceanobacillus iheyensis HTE831] dbj|BAC12732.1| sugar ABC transporter permease [Oceanobacillus iheyensis HTE831] Length = 290 Score = 190 bits (483), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 95/243 (39%), Positives = 145/243 (59%) Query: 3 SFKTNAEILNNSLGWPSSFRFSNYVMAFKIAPLSRFYINSVIVGIFGTXXXXXXXGMAGY 62 SFK+ E N G+P+ F NY A++IA L + NS+ V + T +A Y Sbjct: 48 SFKSEQEFTVNQFGFPNEFILENYANAWEIANLGVLFKNSIFVCVTATLVTVIIGALASY 107 Query: 63 VLARFQFRFKNLLMGAFSLSLLIPGAAMLQPLYLTVNTLGLYDKVIGLIIVYAGFGLPVS 122 LARF+FRF ++ F LLIP A L P+++ + LGL + I L+ Y F LP++ Sbjct: 108 FLARFKFRFNKIMYTFFIFGLLIPIHATLVPMFILMKNLGLLNTEITLLFPYVAFHLPIT 167 Query: 123 LYILSSYFLTIPKEMEESAYLDGASFIQTFFRIILPISKPGFGTAGVMQFLLCWNEFQFA 182 ++IL+S+ PK++EESA +DGA + F+ IILP+S+P T ++ F+ WNEF FA Sbjct: 168 IFILTSFMKAFPKDIEESAIMDGAGIFRIFWSIILPMSRPAIATVVILNFIYNWNEFSFA 227 Query: 183 IILTTGNQSRTLPLALYYFKSQFASDYGVMFAATMVVIVPSILVYILLQKQVVSGLAAGA 242 ++L +TLPL L F QF ++YG A + +VP ++ Y+ L+K++V+G+ +GA Sbjct: 228 LVLINDPALQTLPLGLANFAGQFTTNYGAQMAGLTMSLVPIVIFYLFLEKEIVNGMTSGA 287 Query: 243 VKG 245 VKG Sbjct: 288 VKG 290 >ref|NP_694394.1| ABC transporter permease [Oceanobacillus iheyensis HTE831] dbj|BAC15428.1| ABC transporter permease [Oceanobacillus iheyensis HTE831] Length = 273 Score = 169 bits (427), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 87/244 (35%), Positives = 149/244 (61%) Query: 1 MASFKTNAEILNNSLGWPSSFRFSNYVMAFKIAPLSRFYINSVIVGIFGTXXXXXXXGMA 60 + S K EI ++ + S+ S+Y A PL R+ +NS +V + T Sbjct: 29 LTSIKPVNEIFSSFKWFTSNPTLSSYEAALTNRPLLRYMLNSFVVSLLTTVLSLTFAAFT 88 Query: 61 GYVLARFQFRFKNLLMGAFSLSLLIPGAAMLQPLYLTVNTLGLYDKVIGLIIVYAGFGLP 120 Y + R + K L++G + + P A++ P++ V LGL + +GLII Y LP Sbjct: 89 AYAVTRLPIKGKGLILGLVLAASMFPQIAIISPMFNLVTNLGLRNSYLGLIIPYITISLP 148 Query: 121 VSLYILSSYFLTIPKEMEESAYLDGASFIQTFFRIILPISKPGFGTAGVMQFLLCWNEFQ 180 ++++ILS++F IP E+EESA LDGAS QTF +IILP++ PG T G++ F+ WNE+ Sbjct: 149 LAIWILSTFFKKIPYELEESAKLDGASPFQTFRKIILPLATPGIFTTGILVFIAAWNEYL 208 Query: 181 FAIILTTGNQSRTLPLALYYFKSQFASDYGVMFAATMVVIVPSILVYILLQKQVVSGLAA 240 FA+ + + +Q RT+P+ + ++S+F+ +G + AAT++V +P +++ ++ Q+++VSGL + Sbjct: 209 FALTINSDDQWRTVPVGISMYQSEFSIPWGDISAATVIVTIPIVVLVLIFQRRIVSGLTS 268 Query: 241 GAVK 244 G+VK Sbjct: 269 GSVK 272 >ref|NP_391138.1| similar to sugar permease [Bacillus subtilis] sp|O32154|YURM_BACSU Hypothetical ABC transporter permease protein yurM pir||D70018 sugar permease homolog yurM - Bacillus subtilis emb|CAB15248.1| yurM [Bacillus subtilis subsp. subtilis str. 168] Length = 300 Score = 168 bits (426), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 141/245 (57%), Gaps = 1/245 (0%) Query: 1 MASFKTNAEILNNSLGWPSSFRFSNYVMAFKIAPLSRFYINSVIVGIFGTXXXXXXXGMA 60 M++FK + +I +S PSS+ N+V A+ +S +++NSVIV A Sbjct: 57 MSAFKNSDDIFEHSWSLPSSWHPENFVSAWNQG-ISSYFMNSVIVTALTCVITVFISAWA 115 Query: 61 GYVLARFQFRFKNLLMGAFSLSLLIPGAAMLQPLYLTVNTLGLYDKVIGLIIVYAGFGLP 120 Y L+RF+F+ K + L++ L PLY + +LGLY+ LI+ YA + +P Sbjct: 116 AYGLSRFEFKGKGFFLVLCLGGLMLTPQVSLVPLYSIIQSLGLYNTYWALILPYAAYRIP 175 Query: 121 VSLYILSSYFLTIPKEMEESAYLDGASFIQTFFRIILPISKPGFGTAGVMQFLLCWNEFQ 180 ++ ++ SYFL+I KE+EE+AYLDG + FFRI LP+S P T+G++ WNEF Sbjct: 176 FTIILIRSYFLSISKELEEAAYLDGCTSFGVFFRIFLPMSVPILVTSGILTAYHTWNEFM 235 Query: 181 FAIILTTGNQSRTLPLALYYFKSQFASDYGVMFAATMVVIVPSILVYILLQKQVVSGLAA 240 FAII RT+P L F+ +D+GV+ A + P I++++L+QK V G+A+ Sbjct: 236 FAIIFIDDENLRTIPAGLMQFRDALQTDWGVLLAGLTISAAPIIILFLLMQKYFVRGIAS 295 Query: 241 GAVKG 245 G+VKG Sbjct: 296 GSVKG 300 >gb|EAI32315.1| unknown [environmental sequence] Length = 279 Score = 164 bits (415), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 87/251 (34%), Positives = 139/251 (55%), Gaps = 6/251 (2%) Query: 1 MASFKTNAEILNNSLGW-PSSFRFSNYVMAFKI-----APLSRFYINSVIVGIFGTXXXX 54 +++F+ N EIL W P + + F I P ++ +NS+I+ T Sbjct: 29 VSAFRPNPEILAKPANWIPDRWTIYQFTQMFSINGYVSVPAFKYLMNSIIISSVSTVIAI 88 Query: 55 XXXGMAGYVLARFQFRFKNLLMGAFSLSLLIPGAAMLQPLYLTVNTLGLYDKVIGLIIVY 114 M GY ARF F+ KN + + L+ +PG ++ PL++ +GL + IG+IIVY Sbjct: 89 TIGMMGGYAFARFNFKGKNKIFLSLMLARAVPGISLSLPLFILFAKIGLINTSIGVIIVY 148 Query: 115 AGFGLPVSLYILSSYFLTIPKEMEESAYLDGASFIQTFFRIILPISKPGFGTAGVMQFLL 174 +P ++++ +F IPKEM E A DG + +Q F+ + LP++ PG G A + FLL Sbjct: 149 VAMNVPFTIWLTDGFFRQIPKEMSEVARTDGCTRLQAFWNVELPLAGPGIGAAAIFAFLL 208 Query: 175 CWNEFQFAIILTTGNQSRTLPLALYYFKSQFASDYGVMFAATMVVIVPSILVYILLQKQV 234 WNE+ A ILT S+TLP+ + + +F ++ M A +V+IVP+I++ ++QK + Sbjct: 209 SWNEYALASILTRTVHSKTLPIGMMDYLDEFTINWAGMCAIAVVMIVPAIILTFIVQKHL 268 Query: 235 VSGLAAGAVKG 245 VSGL G VKG Sbjct: 269 VSGLTFGGVKG 279 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.329 0.143 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 326,349,277 Number of extensions: 13002054 Number of successful extensions: 41790 Number of sequences better than 1.0e-05: 1728 Number of HSP's gapped: 41080 Number of HSP's successfully gapped: 1731 Length of query: 245 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 123 Effective length of database: 425,995,500 Effective search space: 52397446500 Effective search space used: 52397446500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 124 (52.4 bits)