BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0492.0008.p
         (195 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAN62156.1| hypothetical protein [Pseudomonas aeruginosa]           55   7e-07

>gb|AAN62156.1| hypothetical protein [Pseudomonas aeruginosa]
          Length = 319

 Score = 55.5 bits (132), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 47  SHHVTSGTFREDIWKSLFEQIIPRKFSIEQSVFIIDSHGLVSKEVDLAIFDEQYTPYIFR 106
            H  T G   E++W  + +  +P+++   ++  ++DS G  S+++D+ +FD QY+P+IF 
Sbjct: 107 GHPGTKGDASENVWIDMLDTYLPKRYQAAKA-HVVDSLGNFSQQIDVVVFDRQYSPFIFT 165

Query: 107 LGRIKYIPIEAVAVVVQCK 125
                 IP E+V  V + K
Sbjct: 166 YENETIIPAESVYAVFEAK 184


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.317    0.132    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 254,870,499
Number of extensions: 9479078
Number of successful extensions: 27815
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 27815
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 757,237,578
Length adjustment: 119
Effective length of query: 76
Effective length of database: 434,140,797
Effective search space: 32994700572
Effective search space used: 32994700572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 122 (51.6 bits)