BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0492.0007.p (271 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241198.1| BH0332~unknown conserved protein [Bacillus halo... 229 4e-59 ref|NP_624147.1| conserved hypothetical protein [Thermoanaerobac... 84 3e-15 ref|NP_578853.1| hypothetical protein PF1124 [Pyrococcus furiosu... 81 2e-14 ref|NP_229588.1| conserved hypothetical protein [Thermotoga mari... 73 5e-12 ref|NP_070686.1| hypothetical protein [Archaeoglobus fulgidus DS... 72 1e-11 >ref|NP_241198.1| BH0332~unknown conserved protein [Bacillus halodurans] pir||D83691 hypothetical protein BH0332 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04051.1| BH0332~unknown conserved protein [Bacillus halodurans] Length = 248 Score = 229 bits (585), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 126/263 (47%), Positives = 161/263 (61%), Gaps = 18/263 (6%) Query: 1 LNAYLAITKQEASNKGSKLYRVVNGDLQNTKGEFYRQLIKEYQADW-KQSCIWYEQRYEH 59 +NAYL +TK + S K S L + + D + K F+ Q I ++ W ++ WY+QRY Sbjct: 1 MNAYLTLTKYKGSQKKSDLLKQI--DNPDGKSAFFEQAILDFGNYWGTKNVSWYKQRYAA 58 Query: 60 YSTKLHDTLGDSRCIEFEMASISPLLIGHGGVSALETSLMLHRIYGVPYIPGSAIKGVTA 119 Y + + F + S PL+IG G S LET L LH IYG+PY+PGS IKGVTA Sbjct: 59 YEGHIKSS--SDTNTSFFLKSSFPLIIGQGNPSILETHLTLHPIYGIPYLPGSLIKGVTA 116 Query: 120 NYCHCMLGAENPAFLSDGEYYEALFGSQDQAGYINYEDAWVTPATAESALIDDVMTPHHQ 179 +YCH +LG E+ F EY LFGSQ+QAG I+Y DA TP + ++ L DV+TPHHQ Sbjct: 117 HYCHQVLGKEDSKFKQGEEYALVLFGSQEQAGAIHYHDALPTPKSIKNCLSLDVITPHHQ 176 Query: 180 NYNSIQLQRTDQQKASAPRDDDDPVPLPFLAVNASFRFLLTCPSDRVEKEDARQWLNIAQ 239 +YN Q APRDDD PVP+PFL V A FR +L+C E +WLNIAQ Sbjct: 177 SYN--------QGLNQAPRDDDSPVPVPFLTVKADFRVILSC-----EDLAYAEWLNIAQ 223 Query: 240 EIVSHALQYEGIGGKTNAGYGRM 262 +IVSHA+ GIGGKTNAGYG+M Sbjct: 224 KIVSHAVTEMGIGGKTNAGYGKM 246 >ref|NP_624147.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis] gb|AAM25751.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis] Length = 325 Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 99/237 (41%), Gaps = 57/237 (24%) Query: 75 EFEMASISPLLIGHGGVSALETSLMLHRIYGVPYIPGSAIKGVTANYCHCMLGAENPAFL 134 ++++ + S L+IG G LETSL +H I+G+PYIPG+A+KGV + E Sbjct: 90 QYKITTASRLVIGLGAEHPLETSLTIHHIFGIPYIPGTALKGVCRMVSFWDIAIEEARGE 149 Query: 135 S---------DGEYYEAL-----------------------FGSQDQAGYINYEDAWVTP 162 E YE L FG+QD G + + DA+ Sbjct: 150 EIEEGEIENLQKELYEGLIFDRSSSDKGKEDSPKRVLHKLLFGTQDFKGLLLFLDAFPVI 209 Query: 163 ATAESALIDDVMTPHHQNYNSIQLQRTDQQKASAPRDDDDPVPLPFLAVNASFRFLLTCP 222 S D++ H+++Y D +AP D ++P+P+PFL V + F + Sbjct: 210 NNNVSLFDVDIINVHYKSYYG------DDTGKTAPGDWENPIPIPFLTVKENTSFQFSVL 263 Query: 223 SDRVEKED------------ARQWLN-------IAQEIVSHALQYEGIGGKTNAGYG 260 DRV E+ A +LN + + + AL GIG KT GYG Sbjct: 264 FDRVRFEELIKEKIPPEVKGAIDFLNDCTRLQKLVENWIKKALTEFGIGAKTRLGYG 320 >ref|NP_578853.1| hypothetical protein PF1124 [Pyrococcus furiosus DSM 3638] gb|AAL81248.1| hypothetical protein [Pyrococcus furiosus DSM 3638] Length = 340 Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 72/267 (26%), Positives = 117/267 (43%), Gaps = 73/267 (27%) Query: 52 WYEQRYEHYSTKLHDTLGDSRCIEFEMASISPLLIGHGGVSALETSLMLHRIYGVPYIPG 111 Y++ Y+ Y+ D L I + + S L++G G S ETS+ L R YGVPYIPG Sbjct: 91 LYKKYYQDYT----DMLNSLHAITGKFKTQSRLVVGLGDESVYETSIRLLRNYGVPYIPG 146 Query: 112 SAIKGVTANYCHCMLGAENPAFLSDG-EYYE----------------------------- 141 SAIKGVT + + +L F+++G ++Y+ Sbjct: 147 SAIKGVTRHLTYYVLA----EFINEGNDFYKRAKTVQDAFMKGDPKEILSNAKVPERCSR 202 Query: 142 ----------------------ALFGSQDQAGYINYEDAW-VTPATAESALID-DVMTPH 177 +FG+Q + G + + DA + A+ +++ D+M PH Sbjct: 203 LCKEFLRIFGEKKVPEIIDELIRIFGTQKKEGEVVFFDAIPIAEEIADKPILELDIMNPH 262 Query: 178 HQNYNSIQLQRTDQQKASAPRDDDDPVPLPFLAVNASFRFLLTCPSDRVEKEDARQWLNI 237 + Y ++ ++ P D DP+P+ FL V FL+ V D R+ Sbjct: 263 YGPY-----YQSGEKNVPPPGDWYDPIPIFFLTVPKDVPFLVA-----VGGRD-RELTEK 311 Query: 238 AQEIVSHALQYEGIGGKTNAGYGRMLQ 264 A +V AL+ G+G KT+ GYGR+++ Sbjct: 312 AFSLVKLALRDLGVGAKTSLGYGRLVE 338 >ref|NP_229588.1| conserved hypothetical protein [Thermotoga maritima] pir||D72209 conserved hypothetical protein - Thermotoga maritima (strain MSB8) gb|AAD36854.1| conserved hypothetical protein [Thermotoga maritima] Length = 244 Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 107/230 (46%), Gaps = 34/230 (14%) Query: 37 QLIKEYQADW-KQSCIWYEQRYEHYSTKLHDTLGDSRCIEFEMASISPLLIGHGGVSALE 95 Q +++ Q+D+ K S I E+R + + I +M LL+G G S++E Sbjct: 41 QTVEKLQSDFGKISSILKERREQLIKKR-------KPFINLKMRVKGKLLLGAGNPSSIE 93 Query: 96 TSLMLHRIYGVPYIPGSAIKGVTANYCHCMLGAENPAFLSDGEYYEAL---FGSQDQAGY 152 + L R YG+P IPG+A+KG A++ F + + YE+L FG ++ G Sbjct: 94 VGITLSRNYGLPIIPGTAVKGAFASFL----------FEFERDKYESLAHIFGDTEREGD 143 Query: 153 INYEDAWVTPATAESALIDDVMTPHHQNYNSIQLQRTDQQKASAPRDDDDPVPLPFLAVN 212 + + DA + + + +L D++ PH Q Y ++ P D DPVP+ +L V+ Sbjct: 144 LIFLDA-IPVSDLKFSL--DIVNPHFQPYY--------MKEKLPPNDWYDPVPIKYLVVS 192 Query: 213 ASFRFLLTCPSDRVEKEDARQWLNIAQEIVSHALQYEGIGGKTNAGYGRM 262 + F T R + I Q V L+ G+G KT+ GYGR Sbjct: 193 SGV-FWFTVLESRSGVIGNSEKELIKQRFV-EMLKAYGLGAKTSYGYGRF 240 >ref|NP_070686.1| hypothetical protein [Archaeoglobus fulgidus DSM 4304] pir||D69482 hypothetical protein AF1861 - Archaeoglobus fulgidus gb|AAB89394.1| A. fulgidus predicted coding region AF1861 [Archaeoglobus fulgidus DSM 4304] Length = 343 Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 15/105 (14%) Query: 26 DLQNTKGEFYRQLIKEYQADWKQSCIWYEQRYEHYSTKLHDTLGDSRCIEFEMASISPLL 85 D QN R+ + EY+ ++ YE+ + +S+K+ F M + S L+ Sbjct: 66 DFQNFLNSVLRRSLDEYRVFFEN----YERLFNSFSSKI-----------FSMRTKSRLV 110 Query: 86 IGHGGVSALETSLMLHRIYGVPYIPGSAIKGVTANYCHCMLGAEN 130 +G G S ETS+ LHR YGVPYIPGSA+KGV +Y +L EN Sbjct: 111 VGLGDESVYETSIRLHRNYGVPYIPGSALKGVAKHYAFSILAREN 155 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 16/128 (12%) Query: 143 LFGSQDQAGYINYEDAWVTPATAESA--LIDDVMTPHHQNYNSIQLQRTDQQKASAPRDD 200 +FG+Q + G + + DA+ TP + L D+M PH+Q Y Q P D Sbjct: 230 IFGTQKEEGSVIFFDAFPTPEQLKDKPNLELDIMNPHYQPY---------YQHGEPPGDW 280 Query: 201 DDPVPLPFLAVNASFRFLLTCPSDRVEKEDARQWLNIAQEIVSHALQYEGIGGKTNAGYG 260 P P+ FL V A F S D A++++ AL+ G+G KT+ GYG Sbjct: 281 HSPNPIFFLTVPAGVEFTFAVAS-----RDLDDLAEKAEKLLKEALKKFGVGAKTSLGYG 335 Query: 261 RMLQADRR 268 R D R Sbjct: 336 RFDARDDR 343 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.133 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 410,192,441 Number of extensions: 16585231 Number of successful extensions: 36125 Number of sequences better than 1.0e-05: 9 Number of HSP's gapped: 36116 Number of HSP's successfully gapped: 10 Length of query: 271 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 147 Effective length of database: 420,565,302 Effective search space: 61823099394 Effective search space used: 61823099394 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)