BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0492.0003.p (604 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241194.1| BH0328~unknown conserved protein in others [Bac... 471 e-131 ref|NP_578858.1| hypothetical protein PF1129 [Pyrococcus furiosu... 85 6e-15 ref|ZP_00188370.1| hypothetical protein Rxyl043601 [Rubrobacter ... 84 1e-14 ref|NP_213268.1| putative protein [Aquifex aeolicus] >gi|7517588... 83 2e-14 ref|NP_070692.1| hypothetical protein [Archaeoglobus fulgidus DS... 81 8e-14 >ref|NP_241194.1| BH0328~unknown conserved protein in others [Bacillus halodurans] pir||H83690 hypothetical protein BH0328 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04047.1| BH0328~unknown conserved protein in others [Bacillus halodurans] Length = 604 Score = 471 bits (1211), Expect = e-131, Method: Compositional matrix adjust. Identities = 268/610 (43%), Positives = 367/610 (60%), Gaps = 22/610 (3%) Query: 1 MLISIGPVQEFIAQARKTRDLWFGSHLLSEISKEAARRLA--EAHNARMIFPYIHK-EKI 57 ML SIGPVQEFIAQARKTRDLWFGSHLLSE+ K AA +L+ EAH +IFPY+ EK+ Sbjct: 11 MLFSIGPVQEFIAQARKTRDLWFGSHLLSELGKAAAFKLSKLEAH---VIFPYVENLEKL 67 Query: 58 -AYGLDDLKVANKVLAIVPTNDPKAVALDVRRAVVTKWLGYANKAKEELGSGIIGPMWER 116 A + + N+V+A+V T++PKAVAL+V+ AV+ KW+ YAN A+ LG I +W+R Sbjct: 68 DAKEKEKINSPNRVMALVDTSEPKAVALEVKAAVIEKWMSYANGARRLLGRDINPALWKR 127 Query: 117 QVKDFIEFYAVWSELESEEKYAEVLQQTEQLMAARKTLRDFRPNEPADLFGDDKSGLDSG 176 QVKD IEF+AVW + + E YAEV Q+ E+L+AARKTLRDF+PN+P+ ++G+ KS LD G Sbjct: 128 QVKDLIEFHAVWMDCKEEAHYAEVRQKAEELLAARKTLRDFKPNQPSHMYGEVKSSLDPG 187 Query: 177 RESVLKPSQYMSYAGFGIKHKETLDAISLVKRLS-RFTVDKKEFKSVCDVAFQQFRDELG 235 RE VL+ QY YA +GIK E+LDAISLVKRLS + + + F SVCDVAF Q R ++ Sbjct: 188 RECVLEKHQYKRYAPYGIKKDESLDAISLVKRLSFHLSPNTRHFPSVCDVAFSQLRRKI- 246 Query: 236 ASRNQWMKTAVDEYYRDLKHKYGTALKLTGSDLQSYKSEMFYTSRXXXXXXXXXXXMKKP 295 ++ + Y + +KY K SDL + S +FY + Sbjct: 247 -EKDNLLTDLAKNYQEWVWNKYPKLKKRLFSDL--FDSRLFYVTHIKEMVEGAYP----- 298 Query: 296 INRVKQLEITQNILTSLEELYGKILKEPTPYYALVVGDGDRMGDALRKMKTPAEHQSFTE 355 N+ +Q +I + I LE Y + TPYYA +V DGD+MG ALR +K +HQ+F++ Sbjct: 299 -NKNEQEQIIKLIAQKLESFYKETKLNSTPYYAFLVCDGDQMGKALRNLKNIEDHQAFSK 357 Query: 356 HLSGFASEVERIVFKDDI-KGQMIYSGGDDLMALLPVHRCLAAAQEIRQAFTNTMTLALP 414 LS FA++ +IV D +G+++Y+GGDD+MA LP+HRCL A +++Q F M ALP Sbjct: 358 KLSEFAAKARKIVTTDKRDEGELVYAGGDDVMAYLPLHRCLDVAAKLQQLFGELMNEALP 417 Query: 415 DEDQRPTLSVGIAIVHMFEPLEDSLLIARAAEALAKVRRDELAIHFQKRSGSEEMRVSLP 474 E RPTLSVGI I HM EP+ + +A AAE AK +R+ELAI FQKRSG + MR S+ Sbjct: 418 KEAVRPTLSVGIVIAHMMEPMSEVRKLAMAAEKQAKRKRNELAIFFQKRSGGDRMRFSVS 477 Query: 475 FSENPVNTIVKLQSLYRNRYISTSFAYGLRQLHAEYLDLKAHGSLQNEGMGXXXXXXXXX 534 F P I K+ Y +S A+ ++ LH EY L + + +E Sbjct: 478 FDTEPTRNIKKILKFYYRNVMSVGIAHAIQSLHTEYSGLLQNQLVMSEERLEKLLEQEVS 537 Query: 535 XXXXKKPEFKSKDEIIKEVLSVFKGLEQTDSDRVKDPLVLLNRLAEQCVIAVTLEKVGGA 594 KK DE +K + GL + PL L+RL +Q ++A+ LEK G Sbjct: 538 RLVWKKRSSGIDDETVKSFETCILGLMRKGKG---SPLERLDRLVQQMMVAIQLEKAGDF 594 Query: 595 YGTNDTNSTS 604 D+NS++ Sbjct: 595 TDATDSNSST 604 >ref|NP_578858.1| hypothetical protein PF1129 [Pyrococcus furiosus DSM 3638] gb|AAL81253.1| hypothetical protein [Pyrococcus furiosus DSM 3638] Length = 871 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 89/305 (29%), Positives = 130/305 (42%), Gaps = 56/305 (18%) Query: 197 KETLDAISLVKR-----LSRFTVDKKEFKSVCDVAFQQFRDELGASRNQWMKTAVDEYYR 251 +E L + L+KR + T K F+SV DVA W K ++Y + Sbjct: 474 EEPLCPMCLIKRYYPVWIRSKTGQKIRFESVVDVALLY---------KNWRKIFDEKYGK 524 Query: 252 DLKHKYGTALKLTGSDLQSYKSEMFYTSRXXXXXXXXXXXMKKPINRVKQLEITQNILTS 311 DL K + D S+++Y+S KK I+ K E+ + + Sbjct: 525 DLVSKAREVSEDFVKDNMLVDSDLYYSSTWESGLSKKLKN-KKEIDEEKVKEVVDFLNAA 583 Query: 312 LEELYGKILKEPTPYYALVVGDGDRMGDAL-------------------------RKMKT 346 +E+ P YYA++V DGD MG + + T Sbjct: 584 YKEI-----GNPPKYYAILVMDGDDMGKVISGEVLGEISTRIHPNIRDYVEIPEAKYYST 638 Query: 347 PAEHQSFTEHLSGFASEVERIVFKDDIKGQMIYSGGDDLMALLPVHRCLAAAQEIRQAFT 406 P H + ++ L+ F+ R V KD+ G +IY+GGDD++A+LPV + L A +IR+ F Sbjct: 639 PQVHVAISQALANFSIREVRSVVKDE--GLLIYAGGDDVLAILPVDKALEVAYKIRKEFG 696 Query: 407 NTMTLA--LPDEDQRPTLSVGIAIVHMFEPLEDSLLIAR---AAEALAKVRRDELAIHFQ 461 + LP LS GI IVH PL D+L AR +A +D LAI Sbjct: 697 KSFENGSLLPGW----KLSAGILIVHYKHPLYDALEKARDLLNNKAKNVPGKDTLAIGLL 752 Query: 462 KRSGS 466 KRSGS Sbjct: 753 KRSGS 757 >ref|ZP_00188370.1| hypothetical protein Rxyl043601 [Rubrobacter xylanophilus DSM 9941] Length = 617 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 129/499 (25%), Positives = 206/499 (41%), Gaps = 76/499 (15%) Query: 8 VQEFIAQARKTRDLWFGSHLLSEISKEAARRLAEAHNARMIFPYIHKEKIAYGLDDLKVA 67 +Q F+ QAR+TRDLW GS LLS ++ +A + + E ++FP I + D L A Sbjct: 1 MQGFVGQARRTRDLWAGSFLLSYLAGQAMKAVLEG-GGEIVFPEIGTRERP--TDPLLAA 57 Query: 68 ------------------NKVLAIV-----PTNDPKAVALDVRRAVVTKWLGYANKAKEE 104 N+ A V P +AV +R + W Y Sbjct: 58 ILKRPISENPRPEIGSLPNRFKAGVQDGFDPERCEEAVREAWKRIASSVWERYVEPVAA- 116 Query: 105 LGSGIIGPMWERQVKDFIEFYAVWSELESEEKYAEVLQQTEQLMAARKTLRDFRP-NEPA 163 G G +WERQV+ F E V E + + ++ + RK R P +EP Sbjct: 117 YGKGTK-EIWERQVEGFWEMSWVIGEDPGD-------RSDQRWLDLRKNWRTHHPPSEPG 168 Query: 164 D---LFGD--DKSGLDSGRESVLKP---SQYMSYAG-FGIKHKETLDAISLVKRL----- 209 D L G + SG RE + + AG + E L AI+L+KRL Sbjct: 169 DKCTLMGSWQELSGYVRAREREAQDRFWDELRKKAGTLNLGEHERLCAIALIKRLFPEVA 228 Query: 210 ---SRFTVDKKEFKSVCDVAFQQFRDELGASRNQWMKTAVDEYYRDLKHKYGTALKLTGS 266 + ++ + + S +A + +E +RN+ E R + +A + Sbjct: 229 KETIGWELNARTWPSTPYMAAVPWIEE---ARNKPEAKKHLELVRSSGAR-SSAFGEYNT 284 Query: 267 DLQSYKSEMFYTSRXXXXXXXXXXXMKKPINRVKQLEITQNILTSLEELYGKILKEPTPY 326 +L K+E + ++ + E + +L +L+ L + + + Sbjct: 285 NLACPKNEKDFARLDGNFFHRAALENERATPDLSPQE-RKGLLENLKALNEAVGHPASTF 343 Query: 327 YALVVGDGDRMGDALRKMKTPAEHQSFTEHLSGFASEVERIVFKDDIKGQMIYSGGDDLM 386 YAL++ DGDR+G L+ E + + L+ F +EVE I+ D G+ +Y+GGDD++ Sbjct: 344 YALLLMDGDRLGSLLQNKDI--EPELISRALAEFTAEVEGII--GDHCGRTVYAGGDDVL 399 Query: 387 ALLPVHRCLAAAQEIRQAFTNTMTLALPDEDQRP----------TLSVGIAIVHMFEPLE 436 ALLPV R L AA E+R F D+RP T+S G+ PL Sbjct: 400 ALLPVDRALQAAAELRCRFRRAFGSVFG--DRRPVDKDGKTLKTTISAGLVYATYNTPLR 457 Query: 437 DSLLIARAAEALAKVRRDE 455 ++ A L +V +DE Sbjct: 458 --AVMQEAHRLLDEVAKDE 474 >ref|NP_213268.1| putative protein [Aquifex aeolicus] pir||H70334 hypothetical protein aq_387 - Aquifex aeolicus gb|AAC06668.1| putative protein [Aquifex aeolicus VF5] Length = 621 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 125/555 (22%), Positives = 227/555 (40%), Gaps = 83/555 (14%) Query: 1 MLISIGPVQEFIAQARKTRDLWFGSHLLSEISKEAARRLAEAHNARMIFPYIHKEKIAYG 60 ++ + PVQ FI ++RK RD + S +LS I+K+ +L E + +I+P I + Sbjct: 4 LVFTFSPVQGFIEKSRKLRDFFNSSLILSYITKKLIEKLKEDPDVEIIYPAIKEHDSEKL 63 Query: 61 LDDLKVANKVLAIVPTNDPKAVALDVRRAVVTKWLGYANKAKEELGSGIIGPMWERQVKD 120 L + N+++A + L + + + + + K ++ + Sbjct: 64 L--MNYPNRLVAKFEKDKNYCEELKNQFSKIWEEIYTYIADKIKIPESVKATFKSHNKHY 121 Query: 121 FIEFYAVWSELESEEKYAEVLQQTEQL---------------------MAARKTLRDF-- 157 F F + E++ EE E+ E L + ARKT R + Sbjct: 122 FTYFCEIQEEVDREEWMTELKVNEETLKKFKINQENPYGFTYDLLERKLGARKTFRPYYG 181 Query: 158 RPNEPADLFG----DDKSGLDSGRESVLKPSQYMSYAGFGIKHKETLDAISLVKRLSRFT 213 R +E + G ++ LD E + K + + + E L + L KR F Sbjct: 182 RVDENKKVHGCTLCGERPALDLNWEELRK-----NLPPYHLDDSERLCGVCLTKRFFHFY 236 Query: 214 VDKKE-------FKSVCDVAFQQF-----RDELGASRNQWMKTAVDEYYRDLKHKYGTAL 261 + +KE F S A +D+L + ++ + Y T Sbjct: 237 LKEKEGIKDLAKFHSTRHFALAPLIKKVEKDKLSEEEKEILREILSMY---------TNN 287 Query: 262 KLTGSDLQSYKSEMFYTSRXXXXXXXXXXXMKKPINRVKQLEITQNILTSLEELYGKILK 321 ++ +L+ E+ Y + ++K ++++ ++ L+E K Sbjct: 288 QINDGNLK----ELIYNNIDELTYKRVKALVRKRLDKIPD----KDKEVRLKEFEKKF-- 337 Query: 322 EPTPYYALVVGDGDRMGDAL------RKMK-TPAEHQSFTEHLSGFASEVERIVFKDDIK 374 Y+++++ DGD MG L RK++ T H+ F+E L FA ++ +I +D+I Sbjct: 338 -KNSYFSILMADGDEMGKWLGLKPEKRKVELTENFHKKFSEALFKFAQKITKI--EDNIC 394 Query: 375 GQMIYSGGDDLMALLPVHRCLAAAQEIRQAFTNTMTLALPDED--QRPTLSVGIAIVHMF 432 + +Y GGDD++A+ L AA+ IR+ F+ + L + + PT+S G+ I H Sbjct: 395 LKFVYLGGDDVLAVAHPSVILKAAKIIRKRFSEILKKELKPSNIKEDPTMSAGLVIAHEK 454 Query: 433 EPLEDSLLIARAAEALAKVR-RDELAIH-FQKRSGSEEMRVSLPFSENPVNTIVKLQSLY 490 E L L R AE AK R+ L I S E+ + EN +KL + Sbjct: 455 ENLAFVLEHLRTAERRAKNEGRNRLCISVIPHNSYPRELVLKWDNLEN----FIKLIEYF 510 Query: 491 RNRYISTSFAYGLRQ 505 ++ +S+ Y LR+ Sbjct: 511 KSEKLSSRIPYYLRK 525 >ref|NP_070692.1| hypothetical protein [Archaeoglobus fulgidus DSM 4304] pir||B69483 hypothetical protein AF1867 - Archaeoglobus fulgidus gb|AAB89390.1| A. fulgidus predicted coding region AF1867 [Archaeoglobus fulgidus DSM 4304] Length = 1004 Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 65/190 (34%), Positives = 90/190 (47%), Gaps = 42/190 (22%) Query: 312 LEELYGKILKEPTPYYALVVGDGDRMG------------------------DALR----- 342 L E+Y K+L EP YYA+++ DGD MG DALR Sbjct: 686 LSEVY-KMLGEPPKYYAILMMDGDEMGKLLSGEKLKTAEHYLHSAILERVSDALRVKAKT 744 Query: 343 --KMKTPAEHQSFTEHLSGFA-SEVERIVFKDDIKGQMIYSGGDDLMALLPVHRCLAAAQ 399 ++ TPA H S + L F+ + V +V K + G +IYSGGDD++ LLPV A Sbjct: 745 VRRLITPAAHSSISRALKNFSVNHVPDVVRKGN--GTLIYSGGDDVLVLLPVDTAFDVAT 802 Query: 400 EIRQAFTNTMT--LALPDEDQRPTLSVGIAIVHMFEPLEDSLLIARA-AEALAKVRRDEL 456 E+ F+ + LP LS G+ IVH PL D+L R + K+ R+ + Sbjct: 803 ELAMTFSTSWNGWEMLPGN----KLSAGLLIVHYKHPLYDALEKTRELLQKAKKLGRNAI 858 Query: 457 AIHFQKRSGS 466 A+ KRSGS Sbjct: 859 AVGLLKRSGS 868 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.133 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 820,508,393 Number of extensions: 32009599 Number of successful extensions: 76808 Number of sequences better than 1.0e-05: 9 Number of HSP's gapped: 76792 Number of HSP's successfully gapped: 10 Length of query: 604 Length of database: 757,237,578 Length adjustment: 132 Effective length of query: 472 Effective length of database: 398,844,510 Effective search space: 188254608720 Effective search space used: 188254608720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)