BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0049.p (86 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_348343.1| Uncharacterized conserved protein, YLOA ortholo... 154 8e-37 ref|NP_243379.1| BH2513~unknown conserved protein in others [Bac... 153 1e-36 ref|NP_562665.1| conserved hypothetical protein [Clostridium per... 152 2e-36 ref|NP_570902.1| Uncharacterized conserved protein [Bacillus sub... 147 1e-34 ref|ZP_00179843.1| hypothetical protein Mther227701 [Moorella th... 147 1e-34 >ref|NP_348343.1| Uncharacterized conserved protein, YLOA ortholog [Clostridium acetobutylicum] sp|Q97ID1|YH17_CLOAB Hypothetical UPF0296 protein CAC1717 pir||H97111 uncharacterized conserved protein, YLOA ortholog CAC1717 [imported] - Clostridium acetobutylicum gb|AAK79683.1| Uncharacterized conserved protein, YLOA ortholog [Clostridium acetobutylicum] Length = 92 Score = 154 bits (388), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 76/82 (92%), Positives = 80/82 (97%) Query: 1 MAIKLINIGFGNIVSANRIISIVSPESAPIKRIIQEARDRHMLIDATYGRRTRAVIITDS 60 M IKLINIGFGNIVSANR+++IVSPESAPIKRIIQEARDR MLIDATYGRRTRAVIITDS Sbjct: 1 MDIKLINIGFGNIVSANRLVAIVSPESAPIKRIIQEARDRGMLIDATYGRRTRAVIITDS 60 Query: 61 DHVILSAVQPETVAHRLSSKDD 82 DHVILSAVQPETVAHRLS+KDD Sbjct: 61 DHVILSAVQPETVAHRLSTKDD 82 >ref|NP_243379.1| BH2513~unknown conserved protein in others [Bacillus halodurans] sp|Q9K9Y1|YP13_BACHD Hypothetical UPF0296 protein BH2513 pir||A83964 hypothetical protein BH2513 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06232.1| BH2513~unknown conserved protein in others [Bacillus halodurans] Length = 87 Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 78/86 (90%), Positives = 80/86 (93%) Query: 1 MAIKLINIGFGNIVSANRIISIVSPESAPIKRIIQEARDRHMLIDATYGRRTRAVIITDS 60 M IKLINIGFGNIVSANRIISIVSPESAPIKRIIQEARDR+MLIDATYGRRTRAVII DS Sbjct: 1 MNIKLINIGFGNIVSANRIISIVSPESAPIKRIIQEARDRNMLIDATYGRRTRAVIIADS 60 Query: 61 DHVILSAVQPETVAHRLSSKDDDNDE 86 DHVILSAVQPETVA RL+SKDD E Sbjct: 61 DHVILSAVQPETVAQRLTSKDDLEGE 86 >ref|NP_562665.1| conserved hypothetical protein [Clostridium perfringens] sp|Q8XJK7|YH49_CLOPE Hypothetical UPF0296 protein CPE1749 dbj|BAB81455.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 89 Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 74/82 (90%), Positives = 81/82 (98%) Query: 1 MAIKLINIGFGNIVSANRIISIVSPESAPIKRIIQEARDRHMLIDATYGRRTRAVIITDS 60 M+IKLINIGFGNIVSANR+++IVSPESAPIKRIIQEARDR MLIDATYGRRTRAVIITDS Sbjct: 1 MSIKLINIGFGNIVSANRLVAIVSPESAPIKRIIQEARDRGMLIDATYGRRTRAVIITDS 60 Query: 61 DHVILSAVQPETVAHRLSSKDD 82 DHVILSAVQPETVAHRLS+K++ Sbjct: 61 DHVILSAVQPETVAHRLSTKEE 82 >ref|NP_570902.1| Uncharacterized conserved protein [Bacillus subtilis] sp|Q7WY72|YLZA_BACSU Hypothetical UPF0296 protein ylzA emb|CAE01452.1| ylzA [Bacillus subtilis subsp. subtilis str. 168] Length = 89 Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 71/86 (82%), Positives = 80/86 (93%) Query: 1 MAIKLINIGFGNIVSANRIISIVSPESAPIKRIIQEARDRHMLIDATYGRRTRAVIITDS 60 M IKLINIGFGNI+SANR+ISIVSPESAPIKR+IQ+ARDR MLIDATYGRRTRAV++ DS Sbjct: 1 MTIKLINIGFGNIISANRMISIVSPESAPIKRMIQDARDRGMLIDATYGRRTRAVVVMDS 60 Query: 61 DHVILSAVQPETVAHRLSSKDDDNDE 86 DH+ILSAVQPETVAHRLS K++ DE Sbjct: 61 DHIILSAVQPETVAHRLSVKEEIMDE 86 >ref|ZP_00179843.1| hypothetical protein Mther227701 [Moorella thermoacetica ATCC 39073] Length = 91 Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 73/81 (90%), Positives = 78/81 (96%) Query: 1 MAIKLINIGFGNIVSANRIISIVSPESAPIKRIIQEARDRHMLIDATYGRRTRAVIITDS 60 M IKLINIGFGNIVSA RI++IVSPESAPIKRIIQEARDR MLIDATYGRRTRAVIITDS Sbjct: 1 MDIKLINIGFGNIVSARRIVAIVSPESAPIKRIIQEARDRGMLIDATYGRRTRAVIITDS 60 Query: 61 DHVILSAVQPETVAHRLSSKD 81 DH+ILSAVQPETVAHRLSS++ Sbjct: 61 DHIILSAVQPETVAHRLSSRE 81 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.134 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 110,243,014 Number of extensions: 3258006 Number of successful extensions: 7863 Number of sequences better than 1.0e-05: 20 Number of HSP's gapped: 7863 Number of HSP's successfully gapped: 20 Length of query: 86 Length of database: 757,237,578 Length adjustment: 55 Effective length of query: 31 Effective length of database: 607,907,133 Effective search space: 18845121123 Effective search space used: 18845121123 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 120 (50.8 bits)