BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0043.p (169 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_623121.1| N-formylmethionyl-tRNA deformylase [Thermoanaer... 170 1e-41 ref|ZP_00099244.1| COG0242: N-formylmethionyl-tRNA deformylase [... 158 5e-38 gb|AAN87521.1| Polypeptide deformylase [Heliobacillus mobilis] 157 1e-37 ref|NP_657836.1| Pep_deformylase, Polypeptide deformylase [Bacil... 152 3e-36 ref|NP_980206.1| polypeptide deformylase [Bacillus cereus ATCC 1... 151 6e-36 >ref|NP_623121.1| N-formylmethionyl-tRNA deformylase [Thermoanaerobacter tengcongensis] sp|Q8R9T0|DEF_THETN Peptide deformylase (PDF) (Polypeptide deformylase) gb|AAM24725.1| N-formylmethionyl-tRNA deformylase [Thermoanaerobacter tengcongensis] Length = 159 Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 91/144 (63%), Positives = 107/144 (74%), Gaps = 2/144 (1%) Query: 9 MAIRLIVKEPDEVLHKTAKTVTKITHNVQKLLDDMADTMYDAEGVGLAAPQVGILKRLIV 68 MAIR I K D VL K AK VT+I ++ +L+DMA+TMY +GVGLAA QVGIL+RL+V Sbjct: 1 MAIRYIRKIGDPVLRKKAKPVTEINSHIITILEDMAETMYLNDGVGLAANQVGILRRLVV 60 Query: 69 VDADEEHGLIKLINPEIVSMEGEQFGPEGCLSIPGLNGDVRRAETVTVRGLDREGNEVTI 128 +D E GL++LINPEIV EGEQ GPEGCLSIPG+ G+V+R + V VR LDREGN I Sbjct: 61 IDVGE--GLLELINPEIVYEEGEQIGPEGCLSIPGVFGEVKRPQKVKVRYLDREGNVKEI 118 Query: 129 TGSGLLARAFQHEIDHLNGVLFTD 152 G LLARA HEIDHL GVLF D Sbjct: 119 VGEDLLARALCHEIDHLEGVLFVD 142 >ref|ZP_00099244.1| COG0242: N-formylmethionyl-tRNA deformylase [Desulfitobacterium hafniense] Length = 150 Score = 158 bits (399), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 83/148 (56%), Positives = 103/148 (69%), Gaps = 2/148 (1%) Query: 9 MAIRLIVKEPDEVLHKTAKTVTKITHNVQKLLDDMADTMYDAEGVGLAAPQVGILKRLIV 68 MAI IV+ EVL + A V +IT N+ KLLD+M DT+YDA GVGLAAPQVG+ KR++V Sbjct: 1 MAIYQIVEIGSEVLREKAVPVKEITPNIAKLLDNMLDTLYDANGVGLAAPQVGVSKRVVV 60 Query: 69 VDADEEHGLIKLINPEIVSMEGEQFGPEGCLSIPGLNGDVRRAETVTVRGLDREGNEVTI 128 +D E G ++LINP I++ EGE EGCLSIPG+ G V RA V V L+R+G I Sbjct: 61 IDVGE--GPLELINPVIIAKEGEDLDDEGCLSIPGITGQVARAAKVKVEALNRQGELQVI 118 Query: 129 TGSGLLARAFQHEIDHLNGVLFTDIAEK 156 G GLL+R QHEIDHL G+LF D A+K Sbjct: 119 EGEGLLSRCLQHEIDHLEGILFVDKAKK 146 >gb|AAN87521.1| Polypeptide deformylase [Heliobacillus mobilis] Length = 166 Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 81/148 (54%), Positives = 103/148 (69%), Gaps = 2/148 (1%) Query: 9 MAIRLIVKEPDEVLHKTAKTVTKITHNVQKLLDDMADTMYDAEGVGLAAPQVGILKRLIV 68 MA+ IVK D VL + AKTVTK N+ +L+DDM DTM A+GVGLAAPQ+GI KR++V Sbjct: 15 MAVYEIVKIGDPVLREKAKTVTKFNANLGRLMDDMYDTMVAAKGVGLAAPQIGISKRVVV 74 Query: 69 VDADEEHGLIKLINPEIVSMEGEQFGPEGCLSIPGLNGDVRRAETVTVRGLDREGNEVTI 128 +D + G I+L+NPEI+ EG Q EGCLSIP +V R++ V V+ +R G E I Sbjct: 75 IDVGD--GRIELVNPEILEAEGSQIDVEGCLSIPDFQEEVNRSQRVKVKAQNRNGEEYVI 132 Query: 129 TGSGLLARAFQHEIDHLNGVLFTDIAEK 156 G+G LARA QHEIDHL GVLF D+ +K Sbjct: 133 EGTGFLARALQHEIDHLEGVLFVDLLDK 160 >ref|NP_657836.1| Pep_deformylase, Polypeptide deformylase [Bacillus anthracis A2012] ref|NP_846247.1| polypeptide deformylase [Bacillus anthracis str. Ames] sp|Q81WH1|DEF1_BACAA Peptide deformylase 1 (PDF 1) (Polypeptide deformylase 1) gb|AAP27733.1| polypeptide deformylase [Bacillus anthracis str. Ames] Length = 156 Score = 152 bits (384), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 79/151 (52%), Positives = 99/151 (65%) Query: 9 MAIRLIVKEPDEVLHKTAKTVTKITHNVQKLLDDMADTMYDAEGVGLAAPQVGILKRLIV 68 MA+ IVK P+EVL + V + KLL DM +TM A+GVGLAAPQVG+ ++ V Sbjct: 1 MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60 Query: 69 VDADEEHGLIKLINPEIVSMEGEQFGPEGCLSIPGLNGDVRRAETVTVRGLDREGNEVTI 128 VD ++ G I+LINP I+ GEQ GPEGCLS PGL G+V RA+ + VR +R G + Sbjct: 61 VDIGDDTGKIELINPSILEKRGEQVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLL 120 Query: 129 TGSGLLARAFQHEIDHLNGVLFTDIAEKVYE 159 GLLARA QHEIDHL+GVLFT + YE Sbjct: 121 EAEGLLARAIQHEIDHLHGVLFTSKVTRYYE 151 >ref|NP_980206.1| polypeptide deformylase [Bacillus cereus ATCC 10987] gb|AAS42814.1| polypeptide deformylase [Bacillus cereus ATCC 10987] Length = 156 Score = 151 bits (381), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 78/151 (51%), Positives = 98/151 (64%) Query: 9 MAIRLIVKEPDEVLHKTAKTVTKITHNVQKLLDDMADTMYDAEGVGLAAPQVGILKRLIV 68 MA+ IVK P+EVL + V + KLL DM +TM A+GVGLAAPQVG+ ++ V Sbjct: 1 MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60 Query: 69 VDADEEHGLIKLINPEIVSMEGEQFGPEGCLSIPGLNGDVRRAETVTVRGLDREGNEVTI 128 VD ++ G I+LINP I+ GEQ GPEGCLS PGL G+V RA+ + VR +R G + Sbjct: 61 VDIGDDTGKIELINPSILEKRGEQVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLL 120 Query: 129 TGSGLLARAFQHEIDHLNGVLFTDIAEKVYE 159 G LARA QHEIDHL+GVLFT + YE Sbjct: 121 EAEGFLARAIQHEIDHLHGVLFTSKVTRYYE 151 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.137 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 243,191,245 Number of extensions: 9794107 Number of successful extensions: 27008 Number of sequences better than 1.0e-05: 773 Number of HSP's gapped: 26311 Number of HSP's successfully gapped: 773 Length of query: 169 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 52 Effective length of database: 439,570,995 Effective search space: 22857691740 Effective search space used: 22857691740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 121 (51.2 bits)