BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0041.p (489 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243373.1| BH2507~unknown conserved protein [Bacillus halo... 440 e-122 ref|NP_833584.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus ... 431 e-119 ref|NP_846245.1| sun protein [Bacillus anthracis str. Ames] >gi|... 430 e-119 ref|NP_980204.1| sun protein [Bacillus cereus ATCC 10987] >gi|42... 428 e-118 ref|NP_657834.1| Nol1_Nop2_Sun, NOL1/NOP2/sun family [Bacillus a... 424 e-117 >ref|NP_243373.1| BH2507~unknown conserved protein [Bacillus halodurans] pir||C83963 hypothetical protein BH2507 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06226.1| BH2507~unknown conserved protein [Bacillus halodurans] Length = 450 Score = 440 bits (1132), Expect = e-122, Method: Compositional matrix adjust. Identities = 219/449 (48%), Positives = 307/449 (68%), Gaps = 3/449 (0%) Query: 40 AAESAREAALDILVRVEQQGAYSNLLLNSSLQKTALSREDAGLATELVYGSISRLLTLDY 99 AA+S RE AL+ LV++E+ AYSNLLLN +++ L D GL TELVYG++ R TLDY Sbjct: 2 AAKSVREVALETLVQIEKSQAYSNLLLNQKIKQANLEPRDIGLLTELVYGTVQRQKTLDY 61 Query: 100 VLDGFVSKGIAKLQPWVRNLLRLSLYQIMYLDRIPSHAAVNEAVNIAKKRGHQGISGMVN 159 + FV+KG KL+ WVR LLRLS+YQ++YLD++P HA ++EAVNIAKKRGH+GISG+VN Sbjct: 62 YIASFVAKGKRKLEDWVRILLRLSVYQLVYLDKVPPHAIIHEAVNIAKKRGHKGISGLVN 121 Query: 160 GVLRSVLRAGELPVLPENLSPEQRISILHSHPLWMVKQWAAEYGLDAAEAMCAANNEPPA 219 GVLRS+ R G +P +R+++ +S+P W+VK+W +YG + ++C PP Sbjct: 122 GVLRSMQRQG-MPPFAAIEDKVKRLAVEYSYPEWLVKRWIDQYGEEETVSICEEMLLPPK 180 Query: 220 ASVRVNLTMISREALLEQMLEAGLAASPSLVSPYGIVVKGGGNLALTSWYRDGYLSVQDE 279 + RVN+ + E LE++ G+ A+ ++S IVV G + T ++DG L++QDE Sbjct: 181 VTARVNVRKRTVEEALERLEHEGVQATNGVLSDDAIVV-DKGTITSTRLFQDGELTIQDE 239 Query: 280 SSMLVAEAVAPEPGMRVLDCCAAPGGKSAHMGELMKDEGYIYANDLHPHKARLIADQAQR 339 SSMLVA AVAP PG R+LD CAAPGGKS HM E M EG I + D+H HK +LI +QA+R Sbjct: 240 SSMLVARAVAPRPGERILDACAAPGGKSTHMAERMDGEGTIVSLDMHRHKVKLIEEQAKR 299 Query: 340 LGLECIAIGSTDALRLAQTFEPESFDRILLDAPCSGLGVIRRKPDLKWRKQPEDVASVAA 399 LGL+ I + DA + + F E FDRIL+DAPCSGLGVIRRKPD+KW K+ D+ ++ Sbjct: 300 LGLDNIKAQTLDARKAREVFADEPFDRILVDAPCSGLGVIRRKPDIKWTKREADMKAIRN 359 Query: 400 LQAELLQSVSRLLKPGGILVYSTCTTEQAENSSVIAEFLGNNPGFT-SATFTSPVWQRVE 458 +Q ++L SV++L+KPGG+L+YSTCT +Q EN VIAEF+ + F+ T + V+ Sbjct: 360 VQLDILSSVAKLVKPGGLLIYSTCTIDQLENEQVIAEFMEAHGEFSIDDTVLDRLPAAVQ 419 Query: 459 GTALAAGEGLQLLPQHYGSDGFYISRLQR 487 T + +LP H+G+DGF+I+ L++ Sbjct: 420 ATCNIREGMVTILPHHFGTDGFFITCLKK 448 >ref|NP_833584.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus cereus ATCC 14579] gb|AAP10785.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus cereus ATCC 14579] Length = 444 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 218/448 (48%), Positives = 308/448 (68%), Gaps = 10/448 (2%) Query: 42 ESAREAALDILVRVEQQGAYSNLLLNSSLQKTALSREDAGLATELVYGSISRLLTLDYVL 101 ++ RE ALD L++VE+ GAYSNLLLN+ ++K+A+ R+D GL TE+VYG+I R TLDY L Sbjct: 3 QNVRELALDGLIQVEKSGAYSNLLLNNLIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYL 62 Query: 102 DGFVSKGIAKLQPWVRNLLRLSLYQIMYLDRIPSHAAVNEAVNIAKKRGHQGISGMVNGV 161 F+ K K++ WVR LLRLSLYQ++YLDR+P AA++EAV IAK+RGH+GI+GMVNGV Sbjct: 63 QPFLKK---KVEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGV 119 Query: 162 LRSVLRAGELPVLPENLSPEQRISILHSHPLWMVKQWAAEYGLDAAEAMCAANNEPPAAS 221 LRS+ R G +P + E P +R++I SHP+W+V++W +EYGL+ AE MC N PP + Sbjct: 120 LRSIQREG-VPSVDEIKDPVERLAITTSHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPT 178 Query: 222 VRVNLTMISREALLEQMLEAGLAASPSLVSPYGIVVKGGGNLALTSWYRDGYLSVQDESS 281 RVN+ ++ E +E + G+ A +S I ++ G N+A T ++ G+LS+QDESS Sbjct: 179 ARVNVDKVTVEEAIELLASEGIEAKLGDLSDDAIQIERG-NVAHTEAFKKGFLSIQDESS 237 Query: 282 MLVAEAVAPEPGMRVLDCCAAPGGKSAHMGELMKDEGYIYANDLHPHKARLIADQAQRLG 341 MLVA A+ P G VLD CAAPGGK+ H+ E +K G + + DLH HK RLI QA+RLG Sbjct: 238 MLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLG 297 Query: 342 LECIAIGSTDALRLAQTFEPESFDRILLDAPCSGLGVIRRKPDLKWRKQPEDVASVAALQ 401 LE + + DA ++ + F E+FD+IL+DAPCSG GVIRRKPD+K K D ++ +Q Sbjct: 298 LENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQ 357 Query: 402 AELLQSVSRLLKPGGILVYSTCTTEQAENSSVIAEFLGNNPGFTSATFTSPVWQRV-EGT 460 +L+ ++ LLK GG LVYSTCT E+ EN VI +FL +P F + + + +R+ E Sbjct: 358 IAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIEKFLQEHPEF---EWDTTLKERMPEKL 414 Query: 461 ALAAGEG-LQLLPQHYGSDGFYISRLQR 487 EG +Q+LP ++ +DGFYI+ L++ Sbjct: 415 TPYIDEGQVQILPHYFATDGFYIACLRK 442 >ref|NP_846245.1| sun protein [Bacillus anthracis str. Ames] gb|AAP27731.1| sun protein [Bacillus anthracis str. Ames] Length = 444 Score = 430 bits (1106), Expect = e-119, Method: Compositional matrix adjust. Identities = 217/448 (48%), Positives = 307/448 (68%), Gaps = 10/448 (2%) Query: 42 ESAREAALDILVRVEQQGAYSNLLLNSSLQKTALSREDAGLATELVYGSISRLLTLDYVL 101 ++ RE ALD L++VE+ GAYSNLLLN+ ++K+ + R+D GL TE+VYG+I R TLDY L Sbjct: 3 QNVRELALDGLIQVEKSGAYSNLLLNNLIEKSTIDRKDIGLLTEIVYGTIQRRDTLDYYL 62 Query: 102 DGFVSKGIAKLQPWVRNLLRLSLYQIMYLDRIPSHAAVNEAVNIAKKRGHQGISGMVNGV 161 F+ K K++ WVR LLRLSLYQ++YLDR+P AA++EAV IAK+RGH+GI+GMVNGV Sbjct: 63 QPFLKK---KVEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGV 119 Query: 162 LRSVLRAGELPVLPENLSPEQRISILHSHPLWMVKQWAAEYGLDAAEAMCAANNEPPAAS 221 LRS+ R G +P + E P +R++I SHP+W+V++W AEYGL+ AE MC N PP + Sbjct: 120 LRSIQREG-VPSVDEIKDPVERLAIATSHPVWLVQEWTAEYGLETAEKMCEVNMLPPVPT 178 Query: 222 VRVNLTMISREALLEQMLEAGLAASPSLVSPYGIVVKGGGNLALTSWYRDGYLSVQDESS 281 RVN+ I+ E + + G+ A +S I ++ G N+A T ++ G+LS+QDESS Sbjct: 179 ARVNVDKITVEEAITLLASEGIEAKRGDLSDDAIQIEKG-NVAHTDAFKKGFLSIQDESS 237 Query: 282 MLVAEAVAPEPGMRVLDCCAAPGGKSAHMGELMKDEGYIYANDLHPHKARLIADQAQRLG 341 MLVA A+ P+ G +LD CAAPGGK+ H+ E +K G + + DLH HK RLI QA+RLG Sbjct: 238 MLVARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLG 297 Query: 342 LECIAIGSTDALRLAQTFEPESFDRILLDAPCSGLGVIRRKPDLKWRKQPEDVASVAALQ 401 LE + + DA ++ + F E+FD+IL+DAPCSG GVIRRKPD+K K D ++ +Q Sbjct: 298 LENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSMIQ 357 Query: 402 AELLQSVSRLLKPGGILVYSTCTTEQAENSSVIAEFLGNNPGFTSATFTSPVWQRV-EGT 460 +L+ ++ LLK GG LVYSTCT E+ EN VI FL +P F + + + +R+ E Sbjct: 358 FAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHPEF---EWDTTIKERMPEKL 414 Query: 461 ALAAGEG-LQLLPQHYGSDGFYISRLQR 487 + EG +Q+LP ++ +DGFYI+ L++ Sbjct: 415 SPYMDEGQVQILPHYFATDGFYIACLRK 442 >ref|NP_980204.1| sun protein [Bacillus cereus ATCC 10987] gb|AAS42812.1| sun protein [Bacillus cereus ATCC 10987] Length = 444 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 217/448 (48%), Positives = 307/448 (68%), Gaps = 10/448 (2%) Query: 42 ESAREAALDILVRVEQQGAYSNLLLNSSLQKTALSREDAGLATELVYGSISRLLTLDYVL 101 ++ RE ALD L++VE+ GAYSNLLLN+ ++K+ + R+D GL TE+VYG+I R TLDY L Sbjct: 3 QNVRELALDGLIQVEKSGAYSNLLLNNLIEKSTIDRKDIGLLTEIVYGTIQRRDTLDYYL 62 Query: 102 DGFVSKGIAKLQPWVRNLLRLSLYQIMYLDRIPSHAAVNEAVNIAKKRGHQGISGMVNGV 161 F+ K K++ WVR LLRLSLYQ++YLDR+P AA++EAV IAK+RGH+GI+GMVNGV Sbjct: 63 QPFLKK---KVEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGV 119 Query: 162 LRSVLRAGELPVLPENLSPEQRISILHSHPLWMVKQWAAEYGLDAAEAMCAANNEPPAAS 221 LRS+ R G +P + E P +R++I SHP+W+V++WA+EYGL+ AE MC N PP + Sbjct: 120 LRSIQREG-VPSVDEIKDPVERLAIATSHPVWLVQEWASEYGLETAEKMCEVNMLPPVPT 178 Query: 222 VRVNLTMISREALLEQMLEAGLAASPSLVSPYGIVVKGGGNLALTSWYRDGYLSVQDESS 281 RVN+ I+ E + + G+ A +S I ++ G N+A T ++ G+LS+QDESS Sbjct: 179 ARVNVDKITVEEAITLLASEGIEAKRGDLSDDAIQIEKG-NVAHTDAFKKGFLSIQDESS 237 Query: 282 MLVAEAVAPEPGMRVLDCCAAPGGKSAHMGELMKDEGYIYANDLHPHKARLIADQAQRLG 341 MLVA A+ P+ G VLD CAAPGGK+ H+ E +K G + + DLH HK RLI QA+RLG Sbjct: 238 MLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLG 297 Query: 342 LECIAIGSTDALRLAQTFEPESFDRILLDAPCSGLGVIRRKPDLKWRKQPEDVASVAALQ 401 L + + DA ++ + F E+FD+IL+DAPCSG GVIRRKPD+K K D ++ +Q Sbjct: 298 LGNVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQ 357 Query: 402 AELLQSVSRLLKPGGILVYSTCTTEQAENSSVIAEFLGNNPGFTSATFTSPVWQRV-EGT 460 +L+ ++ LLK GG LVYSTCT E+ EN VI FL +P F + + + +R+ E Sbjct: 358 LAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHPEF---EWDTTIKERMPEKL 414 Query: 461 ALAAGEG-LQLLPQHYGSDGFYISRLQR 487 + EG +Q+LP ++ +DGFYI+ L++ Sbjct: 415 SPYIDEGQVQILPHYFATDGFYIACLRK 442 >ref|NP_657834.1| Nol1_Nop2_Sun, NOL1/NOP2/sun family [Bacillus anthracis A2012] Length = 444 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 216/448 (48%), Positives = 303/448 (67%), Gaps = 10/448 (2%) Query: 42 ESAREAALDILVRVEQQGAYSNLLLNSSLQKTALSREDAGLATELVYGSISRLLTLDYVL 101 ++ RE ALD L++VE+ GAYSNLLLN+ ++K+ + R+D GL TE+VYG+I R TLDY L Sbjct: 3 QNVRELALDGLIQVEKSGAYSNLLLNNLIEKSTIDRKDIGLLTEIVYGTIQRRDTLDYYL 62 Query: 102 DGFVSKGIAKLQPWVRNLLRLSLYQIMYLDRIPSHAAVNEAVNIAKKRGHQGISGMVNGV 161 F+ K K++ WVR LLRLSLYQ++YLDR+P AA++EAV IAK+RGH+GI+GMVNGV Sbjct: 63 QPFLKK---KVEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGV 119 Query: 162 LRSVLRAGELPVLPENLSPEQRISILHSHPLWMVKQWAAEYGLDAAEAMCAANNEPPAAS 221 LRS+ R G +P + E P +R++I SHP+W+V++W AEYGL+ AE MC N PP + Sbjct: 120 LRSIQREG-VPSVDEIKDPVERLAIATSHPVWLVQEWTAEYGLETAEKMCEVNMLPPVPT 178 Query: 222 VRVNLTMISREALLEQMLEAGLAASPSLVSPYGIVVKGGGNLALTSWYRDGYLSVQDESS 281 RVN+ I+ E + + G+ A +S I + G N+A T ++ G+LS+QDESS Sbjct: 179 ARVNVDKITVEEAITLLASEGIEAKRGDLSDDAIQIXKG-NVAHTDAFKKGFLSIQDESS 237 Query: 282 MLVAEAVAPEPGMRVLDCCAAPGGKSAHMGELMKDEGYIYANDLHPHKARLIADQAQRLG 341 MLVA A+ P+ G +LD CAAPGGK+ H+ E +K G + + DLH HK RLI QA+RL Sbjct: 238 MLVARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLX 297 Query: 342 LECIAIGSTDALRLAQTFEPESFDRILLDAPCSGLGVIRRKPDLKWRKQPEDVASVAALQ 401 LE + + DA ++ + F E FD+IL+DAPCSG GVIRRKPD+K K D ++ +Q Sbjct: 298 LENVETKALDARKVQEHFANEXFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSMIQ 357 Query: 402 AELLQSVSRLLKPGGILVYSTCTTEQAENSSVIAEFLGNNPGFTSATFTSPVWQRV-EGT 460 +L+ + LLK GG LVYSTCT E+ EN VI FL +P F + + + +R+ E Sbjct: 358 FAILEKXAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHPEF---EWDTTIKERMPEKL 414 Query: 461 ALAAGEG-LQLLPQHYGSDGFYISRLQR 487 + EG +Q+LP ++ +DGFYI+ L++ Sbjct: 415 SPYMDEGQVQILPHYFATDGFYIACLRK 442 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.132 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 651,281,872 Number of extensions: 26004452 Number of successful extensions: 76071 Number of sequences better than 1.0e-05: 559 Number of HSP's gapped: 74948 Number of HSP's successfully gapped: 563 Length of query: 489 Length of database: 757,237,578 Length adjustment: 130 Effective length of query: 359 Effective length of database: 404,274,708 Effective search space: 145134620172 Effective search space used: 145134620172 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)