BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0034.p (585 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_389466.1| similar to hypothetical proteins [Bacillus subt... 503 e-141 ref|NP_371750.1| conserved hypothetical protein [Staphylococcus ... 477 e-133 ref|NP_645926.1| conserved hypotehtical protein [Staphylococcus ... 475 e-132 ref|NP_243364.1| BH2498~unknown conserved protein [Bacillus halo... 466 e-130 ref|ZP_00182477.1| hypothetical protein Exigu219801 [Exiguobacte... 463 e-129 >ref|NP_389466.1| similar to hypothetical proteins [Bacillus subtilis] pir||E69879 conserved hypothetical protein yloV - Bacillus subtilis emb|CAA74257.1| YloV protein [Bacillus subtilis] emb|CAB13457.1| yloV [Bacillus subtilis subsp. subtilis str. 168] Length = 553 Score = 503 bits (1296), Expect = e-141, Method: Compositional matrix adjust. Identities = 272/584 (46%), Positives = 362/584 (61%), Gaps = 44/584 (7%) Query: 1 MVLAGAEKLQQHAEHVNSLNVFPVPDGDTGTNMNLTMTAGANELKKNNTGSVGQCAGVLS 60 M+LAGA+ L Q+A V++LNVFPVPDGDTGTNMNL+MT+GA E+++ +T +G+ LS Sbjct: 14 MILAGAQNLSQNASAVDALNVFPVPDGDTGTNMNLSMTSGAREVEQMDTDDIGKVGSALS 73 Query: 61 KGLLMGARGNSGVILSQLFRGLGRYAAQYDELNTQQFAAALQTGVDTAYKAVVKPVEGTI 120 KGLLMGARGNSGVILSQLFRG + E+N +FAAALQ GVD AYKAV+KPVEGTI Sbjct: 74 KGLLMGARGNSGVILSQLFRGFSKNIETKKEINALEFAAALQAGVDMAYKAVMKPVEGTI 133 Query: 121 LTVAKEAARHAVYYARRTTDVTELMTEVLSRAKEALANTPELLPVLKQVGVVDSGGQGLV 180 LTVAK+AA+ A+ A + TD+T LMT V A+ +L TPELLPVLK+VGVVDSGG+GL+ Sbjct: 134 LTVAKDAAKKAMILAEKETDITALMTAVTEEAEASLNRTPELLPVLKEVGVVDSGGKGLL 193 Query: 181 YIYEGFHQYLTGSAGTXXXXXXXXXXXXXXXXXXXXXXLTKHENXXXXXXXXXXXXXXTE 240 +YEGF L G + TE Sbjct: 194 CVYEGFLASLKGETVPQKAVLPSLDDMVSAEHHKSAQSMMN-----------------TE 236 Query: 241 DIEFLYDMEFFINRLLGGSVKTEFDEESFRKALSVNGDSIIVISDDETIKVHVHSKTPGE 300 DIEF + E + RL K EFDE +FR+ LS GDS++VI+D+ KVH+H++ PG Sbjct: 237 DIEFGFCTEVMV-RL--DQTKREFDEGTFRQDLSQFGDSLLVIADESLAKVHIHAEEPGN 293 Query: 301 VLNLALQYGEITQIHILNMREQHRDLLTAGMDIAPMPDLFADIPQEESSVQAPAVPPADD 360 VLN A YGE+ +I I NMREQH +++ +ES PPA Sbjct: 294 VLNYAQHYGELIKIKIENMREQHTSIIS-----------------QESKPADNETPPAKQ 336 Query: 361 MAQYGFIAVSSGEGISDIFRSLGVDAILSGGQTMNPSTEDFVNAISSISAKHIYILPNNS 420 YG + V+ GEGI+D+F+S+G ++ GGQTMNPSTED V+A+ S++A ++ILPNNS Sbjct: 337 --PYGIVTVAMGEGIADLFKSIGASVVIEGGQTMNPSTEDIVDAVKSVNADTVFILPNNS 394 Query: 421 NIVLAAQQAKELLEGEREITVIPSKSIPQGIAAAFAFQEEDAVETNTGNMLEAISQVKSG 480 NI++AA QA +++ ++ VIP+K++PQG++A AF + E N NML AI QVKSG Sbjct: 395 NIIMAANQAASVVD--EQVFVIPAKTVPQGMSALLAFNPDQEAEANEANMLSAIQQVKSG 452 Query: 481 QITNAVRDTVIEELEIKSGQYIGIANSKIVXXXXXXXXXXXXXXGSMLENGDEIVTVLTG 540 Q+T +VRDT I+ +IK G ++GI N I+ M+ DEIVT+L G Sbjct: 453 QVTFSVRDTHIDGKDIKKGDFMGILNGTIIGTSENQLSAAKMLLSEMIGEDDEIVTILYG 512 Query: 541 AESEDSVTDALENWLAEAYPQVEVEXXXXHNGGQPLYYYLFSVE 584 ++ + LE +L+E Y ++EVE HNG QPLY Y+ S E Sbjct: 513 EDASQEEAEQLEAFLSEKYEEIEVE---IHNGKQPLYSYIVSAE 553 >ref|NP_371750.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] ref|NP_374342.1| conserved hypotehtical protein [Staphylococcus aureus subsp. aureus N315] pir||E89895 conserved hypotehtical protein SA1069 [imported] - Staphylococcus aureus (strain N315) dbj|BAB42321.1| conserved hypotehtical protein [Staphylococcus aureus subsp. aureus N315] dbj|BAB57388.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] Length = 548 Score = 477 bits (1227), Expect = e-133, Method: Compositional matrix adjust. Identities = 260/584 (44%), Positives = 354/584 (60%), Gaps = 48/584 (8%) Query: 1 MVLAGAEKLQQHAEHVNSLNVFPVPDGDTGTNMNLTMTAGANELKKNNTGSVGQCAGVLS 60 M++ GA+ L +A+ V+SLNV+PVPDGDTGTNMNLTMT+G E++ N + ++G+ S Sbjct: 13 MIIQGAQNLSNNADLVDSLNVYPVPDGDTGTNMNLTMTSGREEVENNLSKNIGELGKTFS 72 Query: 61 KGLLMGARGNSGVILSQLFRGLGRYAAQYDELNTQQFAAALQTGVDTAYKAVVKPVEGTI 120 KGLLMGARGNSGVILSQLFRG + E+N++ A + Q GV+TAYKAV+KPVEGTI Sbjct: 73 KGLLMGARGNSGVILSQLFRGFCKNIESESEINSKLLAESFQAGVETAYKAVMKPVEGTI 132 Query: 121 LTVAKEAARHAVYYARRTTDVTELMTEVLSRAKEALANTPELLPVLKQVGVVDSGGQGLV 180 LTVAK+AA+ A+ A T D ELM ++ +A E+L NTP LL VLK+VGVVDSGG+GL+ Sbjct: 133 LTVAKDAAQAAIEKANNTEDCIELMEYIIVKANESLENTPNLLAVLKEVGVVDSGGKGLL 192 Query: 181 YIYEGFHQYLTGSAGTXXXXXXXXXXXXXXXXXXXXXXLTKHENXXXXXXXXXXXXXXTE 240 +YEGF + L G + K E TE Sbjct: 193 CVYEGFLKALKGEK-----------------VEAKVAKIDKDE--FVHDEHDFHGVINTE 233 Query: 241 DIEFLYDMEFFINRLLGGSVKTEFDEESFRKALSVNGDSIIVISDDETIKVHVHSKTPGE 300 DI + Y E + G K FDE+ FR+ +S GDS++VI+D+E +KVHVH++ PG+ Sbjct: 234 DIIYGYCTEMMVRF---GKNKKAFDEQEFRQDMSQFGDSLLVINDEEIVKVHVHTEYPGK 290 Query: 301 VLNLALQYGEITQIHILNMREQHRDLLTAGMDIAPMPDLFADIPQEESSVQAPAVPPADD 360 V N QYGE+ ++ + NMREQHR++ I +E+ + + P + Sbjct: 291 VFNYGQQYGELIKLKVENMREQHREV----------------IRKEQHTAK-----PKME 329 Query: 361 MAQYGFIAVSSGEGISDIFRSLGVDAILSGGQTMNPSTEDFVNAISSISAKHIYILPNNS 420 + I +S GEGIS+IF+S+G I+SGGQTMNPSTED V I K ILPNN Sbjct: 330 TVETAIITISMGEGISEIFKSMGATHIISGGQTMNPSTEDIVKVIEQSKCKRAIILPNNK 389 Query: 421 NIVLAAQQAKELLEGEREITVIPSKSIPQGIAAAFAFQEEDAVETNTGNMLEAISQVKSG 480 NI++A++QA +++ E VIP+KSIPQGI+A F + + +E N M ++++ VKSG Sbjct: 390 NILMASEQAASIVDAEA--VVIPTKSIPQGISALFQYDVDATLEENKAQMADSVNNVKSG 447 Query: 481 QITNAVRDTVIEELEIKSGQYIGIANSKIVXXXXXXXXXXXXXXGSMLENGDEIVTVLTG 540 +T AVRDT I+ +EIK ++G+ KIV ML EI+TV+ G Sbjct: 448 SLTYAVRDTKIDGVEIKKDAFMGLIEDKIVSSQSDQLTTVTELLNEMLAEDSEILTVIIG 507 Query: 541 AESEDSVTDALENWLAEAYPQVEVEXXXXHNGGQPLYYYLFSVE 584 ++E +VTD + NW+ E YP VEVE H GGQP+Y Y FSVE Sbjct: 508 QDAEQAVTDNMINWIEEQYPDVEVE---VHEGGQPIYQYFFSVE 548 >ref|NP_645926.1| conserved hypotehtical protein [Staphylococcus aureus subsp. aureus MW2] dbj|BAB94974.1| conserved hypotehtical protein [Staphylococcus aureus subsp. aureus MW2] Length = 548 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 260/584 (44%), Positives = 353/584 (60%), Gaps = 48/584 (8%) Query: 1 MVLAGAEKLQQHAEHVNSLNVFPVPDGDTGTNMNLTMTAGANELKKNNTGSVGQCAGVLS 60 M++ GA+ L +A+ V+SLNV+PVPDGDTGTNMNLTMT+G E++ N + ++G+ S Sbjct: 13 MIIQGAQNLSNNADLVDSLNVYPVPDGDTGTNMNLTMTSGREEVENNLSKNIGELGKTFS 72 Query: 61 KGLLMGARGNSGVILSQLFRGLGRYAAQYDELNTQQFAAALQTGVDTAYKAVVKPVEGTI 120 KGLLMGARGNSGVILSQLFRG + E+N++ A + Q GV+TAYKAV+KPVEGTI Sbjct: 73 KGLLMGARGNSGVILSQLFRGFCKNIESESEINSKLLAESFQAGVETAYKAVMKPVEGTI 132 Query: 121 LTVAKEAARHAVYYARRTTDVTELMTEVLSRAKEALANTPELLPVLKQVGVVDSGGQGLV 180 LTVAK+AA+ A+ A T D ELM ++ +A E+L NTP LL VLK+VGVVDSGG+GL+ Sbjct: 133 LTVAKDAAQAAIEKANNTEDCIELMEYIIVKANESLENTPNLLAVLKEVGVVDSGGKGLL 192 Query: 181 YIYEGFHQYLTGSAGTXXXXXXXXXXXXXXXXXXXXXXLTKHENXXXXXXXXXXXXXXTE 240 +YEGF + L G + K E TE Sbjct: 193 CVYEGFLKALKGEK-----------------VEAKVAKIDKDE--FVHDEHDFHGVINTE 233 Query: 241 DIEFLYDMEFFINRLLGGSVKTEFDEESFRKALSVNGDSIIVISDDETIKVHVHSKTPGE 300 DI + Y E + G K FDE+ FR+ +S GDS++VI+D+E +KVHVH++ PG+ Sbjct: 234 DIIYGYCTEMMVRF---GKNKKAFDEQEFRQDMSQFGDSLLVINDEEIVKVHVHTEYPGK 290 Query: 301 VLNLALQYGEITQIHILNMREQHRDLLTAGMDIAPMPDLFADIPQEESSVQAPAVPPADD 360 V N QYGE+ ++ + NMREQHR++ I +E+ + + P + Sbjct: 291 VFNYGQQYGELIKLKVENMREQHREV----------------IRKEQHTAK-----PKME 329 Query: 361 MAQYGFIAVSSGEGISDIFRSLGVDAILSGGQTMNPSTEDFVNAISSISAKHIYILPNNS 420 + I +S GEGIS+IF+S+G I+SGGQTMNPSTED V I K ILPNN Sbjct: 330 TVETAIITISMGEGISEIFKSMGATHIISGGQTMNPSTEDIVKVIEQSKCKRAIILPNNK 389 Query: 421 NIVLAAQQAKELLEGEREITVIPSKSIPQGIAAAFAFQEEDAVETNTGNMLEAISQVKSG 480 NI++A++QA +++ E VIP+KSIPQGI+A F + +E N M ++++ VKSG Sbjct: 390 NILMASEQAASIVDAEA--VVIPTKSIPQGISALFQCDVDATLEENKAQMADSVNNVKSG 447 Query: 481 QITNAVRDTVIEELEIKSGQYIGIANSKIVXXXXXXXXXXXXXXGSMLENGDEIVTVLTG 540 +T AVRDT I+ +EIK ++G+ KIV ML EI+TV+ G Sbjct: 448 SLTYAVRDTKIDGVEIKKDAFMGLIEDKIVSSQSDQLTTVTELLNEMLAEDSEILTVIIG 507 Query: 541 AESEDSVTDALENWLAEAYPQVEVEXXXXHNGGQPLYYYLFSVE 584 ++E +VTD + NW+ E YP VEVE H GGQP+Y Y FSVE Sbjct: 508 QDAEQAVTDNMINWIEEQYPDVEVE---VHEGGQPIYQYFFSVE 548 >ref|NP_243364.1| BH2498~unknown conserved protein [Bacillus halodurans] pir||B83962 hypothetical protein BH2498 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06217.1| BH2498~unknown conserved protein [Bacillus halodurans] Length = 557 Score = 466 bits (1199), Expect = e-130, Method: Compositional matrix adjust. Identities = 262/585 (44%), Positives = 351/585 (60%), Gaps = 42/585 (7%) Query: 1 MVLAGAEKLQQHAEHVNSLNVFPVPDGDTGTNMNLTMTAGANELKKNNTGSVGQCAGVLS 60 + +AGA L QHA+ V++LNVFPVPDGDTGTNMNLT+T+GA E+KK + G+ A + Sbjct: 14 LFIAGANNLSQHAKVVDALNVFPVPDGDTGTNMNLTITSGAQEVKKFHGDHAGELAAAFA 73 Query: 61 KGLLMGARGNSGVILSQLFRGLGRYAAQYDELNTQQFAAALQTGVDTAYKAVVKPVEGTI 120 KGLLMGARGNSGVILSQLFRG + FA AL GV+TAYKAV+KPVEGTI Sbjct: 74 KGLLMGARGNSGVILSQLFRGFSKSVEGRRAFTVLDFAEALTQGVETAYKAVMKPVEGTI 133 Query: 121 LTVAKEAARHAVYYARRTTDVTELMTEVLSRAKEALANTPELLPVLKQVGVVDSGGQGLV 180 LTVAK++A A + T D+ L+ +++ AK++L TP+LLPVLK+VGVVDSGGQGLV Sbjct: 134 LTVAKDSANAAKKAVKHTDDLVSLIEIIVTEAKQSLQRTPDLLPVLKEVGVVDSGGQGLV 193 Query: 181 YIYEGFHQYLTGSAGTXXXXXXXXXXXXXXXXXXXXXXLTKHENXXXXXXXXXXXXXXTE 240 YIYEGF + G + H+N TE Sbjct: 194 YIYEGFLAAVKGEP--------LKEGIHEVPSMDNLIKVEHHQNAQSHLA--------TE 237 Query: 241 DIEFLYDMEFFINRLLGGSVKT-EFDEESFRKALSVNGDSIIVISDDETIKVHVHSKTPG 299 DIEF Y E + R + T FDE +FR LS GDS++V+SD++ +KVH+H++ PG Sbjct: 238 DIEFGYCTEVMV-RFESDKLSTYPFDEPAFRDELSEWGDSLLVVSDEDLLKVHIHAEFPG 296 Query: 300 EVLNLALQYGEITQIHILNMREQHRDLLTAGMDIAPMPDLFADIPQEESSVQAPAVPPAD 359 EVL A +YG + I NMREQH LL E S QA Sbjct: 297 EVLTRAQRYGSLIHTKIENMREQHTHLL-------------------EESKQAFPDQEKK 337 Query: 360 DMAQYGFIAVSSGEGISDIFRSLGVDAILSGGQTMNPSTEDFVNAISSISAKHIYILPNN 419 +++ G + VS G+GI+ +F+SLG ++ GGQTMNPSTED V AI + AK++ +LPNN Sbjct: 338 PLSELGIVTVSMGDGIAKLFQSLGAGVVIPGGQTMNPSTEDIVKAIEEVHAKNVLVLPNN 397 Query: 420 SNIVLAAQQAKELLEGEREITVIPSKSIPQGIAAAFAFQEEDAVETNTGNMLEAISQVKS 479 NI+L AQQA ++ + + V+PSK++PQG+AA +F ++E N M E ++ VKS Sbjct: 398 GNIILVAQQAADV--ADVNVKVVPSKTVPQGLAALLSFNPSSSLEENANVMAETMAHVKS 455 Query: 480 GQITNAVRDTVIEELEIKSGQYIGIANSKIVXXXXXXXXXXXXXXGSMLENGDEIVTVLT 539 GQ+T AVRDT IE LEIK G ++GI +IV M++ EIVTV+ Sbjct: 456 GQVTYAVRDTSIEGLEIKKGHFMGILEKEIVTSGEDMLDVTKRLLEQMIDEDSEIVTVIQ 515 Query: 540 GAESEDSVTDALENWLAEAYPQVEVEXXXXHNGGQPLYYYLFSVE 584 GA++ + T+ L ++ ++YP+VEV+ G QPLY YLF+VE Sbjct: 516 GADATNEQTEELIQFIEQSYPEVEVDEQI---GDQPLYAYLFAVE 557 >ref|ZP_00182477.1| hypothetical protein Exigu219801 [Exiguobacterium sp. 255-15] Length = 544 Score = 463 bits (1191), Expect = e-129, Method: Compositional matrix adjust. Identities = 263/585 (44%), Positives = 348/585 (59%), Gaps = 42/585 (7%) Query: 1 MVLAGAEKLQQHAEHVNSLNVFPVPDGDTGTNMNLTMTAGANELKKNNTGSVGQCAGVLS 60 M+ GA L Q+A+ V+SLNVFPVPDGDTGTNMNLTMT+G+ E K T SV + A V + Sbjct: 1 MIQNGAANLYQNADFVDSLNVFPVPDGDTGTNMNLTMTSGSKEAAKTTTDSVSEVATVFA 60 Query: 61 KGLLMGARGNSGVILSQLFRGLGRYAAQYDELNTQQFAAALQTGVDTAYKAVVKPVEGTI 120 +GLLMGARGNSGVILSQLFRG + D ++T++FA ALQ GVDTAYKAV+KPVEGTI Sbjct: 61 RGLLMGARGNSGVILSQLFRGFSKSIEGKDAIDTKEFADALQKGVDTAYKAVMKPVEGTI 120 Query: 121 LTVAKEAARHAVYYARRTTDVTELMTEVLSRAKEALANTPELLPVLKQVGVVDSGGQGLV 180 LTVA+E A A+ + TTD+ ELM V+ +K +L TP+LLPVLK+VGVVDSGGQGLV Sbjct: 121 LTVARETAVAAIAQSETTTDLLELMRGVVEASKVSLEGTPDLLPVLKEVGVVDSGGQGLV 180 Query: 181 YIYEGFHQYLTGSAGTXXXXXXXXXXXXXXXXXXXXXXLTKHENXXXXXXXXXXXXXXTE 240 IYEGF L G L + E+ TE Sbjct: 181 CIYEGFLATLEGK-------------ELEKPHVPVMEALVEAEHHKSAQSFMS-----TE 222 Query: 241 DIEFLYDMEFFINRLLGGSVKTEFDEESFRKALSVNGDSIIVISDDETIKVHVHSKTPGE 300 +I + Y E + T F EE+FR L+ GDS++V++D+E +KVHVH +TPGE Sbjct: 223 EIHYGYCTEIMVRFQDDKLADTPFSEEAFRNELAEFGDSLLVVADEELLKVHVHVETPGE 282 Query: 301 VLNLALQYGEITQIHILNMREQHRDLLTAGMDIAPMPDLFADIPQEESSVQAPAVPPADD 360 V+ ++GE+ + I NMR+QH +L EE V A P A Sbjct: 283 VITKGQRFGELVAVKIENMRQQHSTIL------------------EEEGVNQMAAPVATK 324 Query: 361 M-AQYGFIAVSSGEGISDIFRSLGVDAILSGGQTMNPSTEDFVNAISSISAKHIYILPNN 419 AQ + V+ GEGIS++F+SLGV ++ GGQTMNPSTED V AI A+H+Y+ PNN Sbjct: 325 AKAQSALVTVAMGEGISELFKSLGVSIVIEGGQTMNPSTEDIVKAIEDAHAEHVYVYPNN 384 Query: 420 SNIVLAAQQAKELLEGEREITVIPSKSIPQGIAAAFAFQEEDAVETNTGNMLEAISQVKS 479 SNI++AA+QA + +TV+ SK++PQG+AA + E V N +M +AI+ VKS Sbjct: 385 SNIIMAAEQAASV--ASCGVTVVKSKTVPQGLAATIVYNPEATVAENERHMTDAIAAVKS 442 Query: 480 GQITNAVRDTVIEELEIKSGQYIGIANSKIVXXXXXXXXXXXXXXGSMLENGDEIVTVLT 539 GQ+T AVRDT I+ +EIK ++ IA +I+ +++ + DEI+TVL Sbjct: 443 GQVTYAVRDTSIDGVEIKKDDHMAIAEKQIIATDHSSLGAVKKLVDTLVTDEDEIITVLF 502 Query: 540 GAESEDSVTDALENWLAEAYPQVEVEXXXXHNGGQPLYYYLFSVE 584 G D L ++ P+ EVE H+G QPLY Y+ SVE Sbjct: 503 GEGVAQEEVDELVAYIESINPEAEVE---VHDGKQPLYSYILSVE 544 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.313 0.131 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 744,636,115 Number of extensions: 28748721 Number of successful extensions: 63343 Number of sequences better than 1.0e-05: 78 Number of HSP's gapped: 63125 Number of HSP's successfully gapped: 134 Length of query: 585 Length of database: 757,237,578 Length adjustment: 131 Effective length of query: 454 Effective length of database: 401,559,609 Effective search space: 182308062486 Effective search space used: 182308062486 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 129 (54.3 bits)