BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0033.p (286 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAL67545.1| hypothetical protein YviA [Bacillus licheniformis] 184 2e-45 ref|NP_653643.1| DUF194, Uncharacterized protein, DegV family CO... 172 8e-42 ref|ZP_00104004.1| COG1307: Uncharacterized protein conserved in... 168 1e-40 ref|NP_981596.1| degV family protein [Bacillus cereus ATCC 10987... 168 1e-40 ref|NP_834862.1| DegV family protein [Bacillus cereus ATCC 14579... 166 4e-40 >gb|AAL67545.1| hypothetical protein YviA [Bacillus licheniformis] Length = 280 Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 97/279 (34%), Positives = 161/279 (57%), Gaps = 5/279 (1%) Query: 3 RTVIVTDSTSDIPPTMAEALGIEVVPLTLMFGEEAFRDNVDMTPEQFYEXXXXXXXXXXX 62 +T +VTDST+ IP + + I ++PL ++FGE ++R+ +DM+ + +Y+ Sbjct: 2 KTAVVTDSTAYIPKDLRDRYNIHMIPLNVIFGETSYREEIDMSWKDYYKEVKAHENLPTT 61 Query: 63 XXXXXVEYMNVYQGIQERYPGCRILSFHISSGLSGTYQSAVLAKSMLEEKGESITVVDSL 122 E +++Y+ + E Y ++S H+SSG+SGT+ SAV A MLE G + DS Sbjct: 62 SQPAYGELISLYEKLGETYDA--VISIHLSSGISGTFNSAVSASGMLE--GIKVYPFDSE 117 Query: 123 SASYGFGFMVVEAARLAAEGHDPEEILAQAERLRQSRKLYFLVDTLEYLQKGGRIGKASA 182 + GF +EAA +A +G PEEI+ + ++ S + YF+VD L +LQ+GGR+ A A Sbjct: 118 ISCMAQGFYAIEAAEMAEKGAAPEEIIRHLDHMKTSMRAYFMVDDLSHLQRGGRLSGAQA 177 Query: 183 FLGTLLNIKPILSIDAEGIIYAVEKVRGRKKAVARMIELFKQDLPGVDKINVAVGHTAEP 242 F+G+LL +KPIL + + +I EK+R RKKA+ R+ ELF +D + V H Sbjct: 178 FVGSLLKVKPILHFENK-LIVPYEKIRTRKKAMNRLFELFGEDAEKGKPLRAVVIHANRE 236 Query: 243 ASGEEFLKELAGHFTLEEKVLTNVGPVVGSHVGNGTLAV 281 ++ ++EL+ + E + GPV+G+H+G G + + Sbjct: 237 EEADQIIEELSKQYAHVEFYKSYFGPVIGTHLGEGAMGI 275 >ref|NP_653643.1| DUF194, Uncharacterized protein, DegV family COG1307 [Bacillus anthracis A2012] ref|NP_847598.1| degV family protein [Bacillus anthracis str. Ames] gb|AAP29084.1| degV family protein [Bacillus anthracis str. Ames] Length = 280 Score = 172 bits (436), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 95/279 (34%), Positives = 158/279 (56%), Gaps = 5/279 (1%) Query: 3 RTVIVTDSTSDIPPTMAEALGIEVVPLTLMFGEEAFRDNVDMTPEQFYEXXXXXXXXXXX 62 +T IVTDST+ IP + + L I ++PL ++FG E++++ +++ + FY Sbjct: 2 KTAIVTDSTAYIPKHIRDELNIYMIPLNVVFGTESYQEEAEISADDFYVKVREQEELPKT 61 Query: 63 XXXXXVEYMNVYQGIQERYPGCRILSFHISSGLSGTYQSAVLAKSMLEEKGESITVVDSL 122 +++ +Y+ + + Y ++S H+SSG+SGTYQ++ A M+E G + DS Sbjct: 62 SQPAIGKFVELYEELSKDYDA--VISIHLSSGISGTYQTSTTAGQMVE--GIDVYTYDSE 117 Query: 123 SASYGFGFMVVEAARLAAEGHDPEEILAQAERLRQSRKLYFLVDTLEYLQKGGRIGKASA 182 + GF V E ARLA+EG DP+EI+A+ + ++++ YF+VD L +LQ+GGR+ A A Sbjct: 118 ISCEVQGFYVREGARLASEGKDPKEIIARFDEMKKTMDAYFVVDDLHHLQRGGRLNSAQA 177 Query: 183 FLGTLLNIKPILSIDAEGIIYAVEKVRGRKKAVARMIELFKQDLPGVDKINVAVGHTAEP 242 F+G+LL +KP+L + II EK+R RKKA+ R+IE+F + + + H Sbjct: 178 FIGSLLQVKPVLYF-RDKIIIPFEKIRTRKKALKRIIEIFDEQASKGVPMEAVIIHAQRE 236 Query: 243 ASGEEFLKELAGHFTLEEKVLTNVGPVVGSHVGNGTLAV 281 E+ KEL + G V+G+H+G G L + Sbjct: 237 EEANEWKKELEAKYPHVTIRTGYFGAVIGTHLGEGALGL 275 >ref|ZP_00104004.1| COG1307: Uncharacterized protein conserved in bacteria [Desulfitobacterium hafniense] Length = 281 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 90/278 (32%), Positives = 158/278 (56%), Gaps = 3/278 (1%) Query: 5 VIVTDSTSDIPPTMAEALGIEVVPLTLMFGEEAFRDNVDMTPEQFYEXXXXXXXXXXXXX 64 +++ DS+ D+P +++ GI VVP+ + + + + VD+ P FY Sbjct: 4 IVLVDSSCDLPSDLSQKEGIVVVPMPVSIEGKTYSEGVDIFPAGFYPRFSEFKELPKTSQ 63 Query: 65 XXXVEYMNVYQGIQERYPGCRILSFHISSGLSGTYQSAVLAKSMLEEKGESITVVDSLSA 124 + Y+ I + G +++ H+SSGLS T+ +A + + M + E I V+DSL A Sbjct: 64 PNPGTLKDAYEAILAQ--GHEVVAIHLSSGLSSTFSTAQMVREMCSQP-EKIHVIDSLGA 120 Query: 125 SYGFGFMVVEAARLAAEGHDPEEILAQAERLRQSRKLYFLVDTLEYLQKGGRIGKASAFL 184 S G+G + + A RL E + EE A+ ++R+ + F DTL+YL KGGR+ K + F+ Sbjct: 121 SLGYGLLALAANRLVKEANSWEEAEAEIFQVRRQMRYVFTPDTLDYLVKGGRVSKTAGFI 180 Query: 185 GTLLNIKPILSIDAEGIIYAVEKVRGRKKAVARMIELFKQDLPGVDKINVAVGHTAEPAS 244 G LL++KPIL+I AEG I + KVR RK A+ +++EL ++++ ++ + + A P Sbjct: 181 GGLLDVKPILNITAEGRIEPLTKVRSRKAALRKLVELIQEEIRHPEEQEIGISQAACPEE 240 Query: 245 GEEFLKELAGHFTLEEKVLTNVGPVVGSHVGNGTLAVF 282 +E+ +++ +++++G VVGSH G GT+A+F Sbjct: 241 ARALAEEIKMKVPVKDVIISDIGCVVGSHTGPGTIALF 278 >ref|NP_981596.1| degV family protein [Bacillus cereus ATCC 10987] gb|AAS44204.1| degV family protein [Bacillus cereus ATCC 10987] Length = 280 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 93/279 (33%), Positives = 157/279 (56%), Gaps = 5/279 (1%) Query: 3 RTVIVTDSTSDIPPTMAEALGIEVVPLTLMFGEEAFRDNVDMTPEQFYEXXXXXXXXXXX 62 +T IVTDST+ IP + + L I ++PL ++FG E++++ +++ + FY Sbjct: 2 KTAIVTDSTAYIPKHIRDELNIYMIPLNVVFGTESYQEEAEISADDFYVKVREQEELPKT 61 Query: 63 XXXXXVEYMNVYQGIQERYPGCRILSFHISSGLSGTYQSAVLAKSMLEEKGESITVVDSL 122 +++ +Y+ + + Y ++S H+SSG+SGTYQ++ A M+E G + DS Sbjct: 62 SQPAIGKFVELYEELSKDYDA--VISIHLSSGISGTYQTSTTAGQMVE--GIDVYTYDSE 117 Query: 123 SASYGFGFMVVEAARLAAEGHDPEEILAQAERLRQSRKLYFLVDTLEYLQKGGRIGKASA 182 + GF V E A+LA+EG DP+EI+A+ + ++++ YF+VD L +LQ+GGR+ A A Sbjct: 118 ISCEVQGFYVREGAKLASEGKDPKEIIARFDEMKKTMDAYFVVDDLHHLQRGGRLNSAQA 177 Query: 183 FLGTLLNIKPILSIDAEGIIYAVEKVRGRKKAVARMIELFKQDLPGVDKINVAVGHTAEP 242 F+G+LL +KP+L + II EK+R RKKA+ R+IE+F + + + H Sbjct: 178 FIGSLLQVKPVLYF-RDKIIIPFEKIRTRKKALKRIIEIFDEQASKGVPMEAVIIHAQRE 236 Query: 243 ASGEEFLKELAGHFTLEEKVLTNVGPVVGSHVGNGTLAV 281 E+ EL + G V+G+H+G G L + Sbjct: 237 EEANEWKAELEAKYPHVTIRTGYFGAVIGTHLGEGALGL 275 >ref|NP_834862.1| DegV family protein [Bacillus cereus ATCC 14579] gb|AAP12063.1| DegV family protein [Bacillus cereus ATCC 14579] Length = 280 Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 92/279 (32%), Positives = 157/279 (56%), Gaps = 5/279 (1%) Query: 3 RTVIVTDSTSDIPPTMAEALGIEVVPLTLMFGEEAFRDNVDMTPEQFYEXXXXXXXXXXX 62 + IVTDST+ IP + + L I ++PL ++FG E++++ +++ + FY Sbjct: 2 KIAIVTDSTAYIPKQIRDELNIYMIPLNVVFGTESYQEEAEISADDFYVKVREQEELPKT 61 Query: 63 XXXXXVEYMNVYQGIQERYPGCRILSFHISSGLSGTYQSAVLAKSMLEEKGESITVVDSL 122 +++ +Y+ + + Y ++S H+SSG+SGTYQ++ A M+E G + DS Sbjct: 62 SQPAIGKFVELYEELAKDYDA--VISIHLSSGISGTYQTSTTAGQMVE--GIDVYTYDSE 117 Query: 123 SASYGFGFMVVEAARLAAEGHDPEEILAQAERLRQSRKLYFLVDTLEYLQKGGRIGKASA 182 + GF V E A+LA+EG +P+EI+A+ + ++++ YF+VD L +LQ+GGR+ A A Sbjct: 118 ISCEVQGFYVREGAKLASEGKNPKEIIARFDEMKKTMDAYFVVDDLHHLQRGGRLNSAQA 177 Query: 183 FLGTLLNIKPILSIDAEGIIYAVEKVRGRKKAVARMIELFKQDLPGVDKINVAVGHTAEP 242 F+G+LL +KP+L + II EK+R RKKA+ R+IE+F + + + H Sbjct: 178 FIGSLLQVKPVLYF-RDKIIIPFEKIRTRKKALKRIIEIFDEQASKGVPMEAVIIHAQRE 236 Query: 243 ASGEEFLKELAGHFTLEEKVLTNVGPVVGSHVGNGTLAV 281 E+ KEL + G V+G+H+G G L + Sbjct: 237 EEANEWKKELEAKYPHVTIRTGYFGAVIGTHLGEGALGL 275 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 377,873,590 Number of extensions: 13739922 Number of successful extensions: 34185 Number of sequences better than 1.0e-05: 166 Number of HSP's gapped: 33852 Number of HSP's successfully gapped: 166 Length of query: 286 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 162 Effective length of database: 420,565,302 Effective search space: 68131578924 Effective search space used: 68131578924 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)