BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0032.p (685 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_833574.1| ATP-dependent DNA helicase recG [Bacillus cereu... 737 0.0 ref|NP_243361.1| ATP-dependent DNA helicase [Bacillus halodurans... 734 0.0 ref|NP_657824.1| DEXDc, DEAD-like helicases superfamily [Bacillu... 734 0.0 ref|NP_980194.1| ATP-dependent DNA helicase RecG [Bacillus cereu... 733 0.0 ref|NP_389469.1| similar to ATP-dependent DNA helicase [Bacillus... 702 0.0 >ref|NP_833574.1| ATP-dependent DNA helicase recG [Bacillus cereus ATCC 14579] gb|AAP10775.1| ATP-dependent DNA helicase recG [Bacillus cereus ATCC 14579] Length = 682 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/681 (53%), Positives = 478/681 (70%), Gaps = 10/681 (1%) Query: 10 IEVKQINGVSAQKQNELHAFGVFTVKDLLEYYPFRYDDFRPRSLSEIKHGDKATLVAKVI 69 + V + G+ + LH G++TV LLE++P+RY+D+ + L+E+KH ++ T+ KV Sbjct: 7 VPVTDVKGIGGETSELLHEMGIYTVSHLLEHFPYRYEDYAMKDLAEVKHDERVTVEGKVH 66 Query: 70 GIPVLQRFGGK-SRLSCKMIAEPWMFTATWFNQHYVREQLTAQREIVITGKWDQKRNAIT 128 P+LQ +G K SRL+ +++ ++ TA FN+ Y +++L I ITGKWDQ R I Sbjct: 67 SAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDETITITGKWDQHRQTIA 126 Query: 129 VTDYEFTDRGEGKIGTLQPVYSVGGKITQTWIRKIINQGLQQYGDLIPEILPHSIIWKYD 188 V++ F + ++PVYSV GK+T +R+ I Q L++YGD I E+LP ++ +Y Sbjct: 127 VSELHFGPVVRQQ--EVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEVLPDGLLGRYK 184 Query: 189 FLSRKRAIATIHRPEDTREGQQGRRRMVYEELFLFQLKVQAFRVLNRGRMDGVVHTVDNA 248 L R A+ +H P + +Q RRR VYEE FLFQLK+Q R + R G + +A Sbjct: 185 LLPRYEALRALHFPVGQEDLKQARRRFVYEEFFLFQLKMQTLRKMERENSKGTKKEIPSA 244 Query: 249 TVRTFVRSLPFELTDAQKRVELEILQDMRSPYCMNRLLQGDVGSGKTVLAAIALYATVKS 308 ++ F+ +LPF LT AQ+RV EIL+DM SPY MNRLLQGDVGSGKTV+AAI LYA+ + Sbjct: 245 ELQEFIDALPFPLTGAQRRVVDEILKDMTSPYRMNRLLQGDVGSGKTVVAAIGLYASKLA 304 Query: 309 GFQGALMVPTEILAEQHMRSLTKMFEPFGITVGLLTGSVTGRKRKDLLASLQMGMLDIVV 368 +QGALMVPTEILAEQH +SL + F FG+ V LLT SV G +R+++LA L+ G +DI+V Sbjct: 305 HYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGARRREILAKLEQGEIDILV 364 Query: 369 GTHALIQEDVFFRGLGMVVTDEQHRFGVNQRSILRRKGYNPDVLTMTATPIPRTLAITVF 428 GTHALIQ++V F LG+V+TDEQHRFGV QR +LR KG +PDVL MTATPIPRTLAIT F Sbjct: 365 GTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMTATPIPRTLAITAF 424 Query: 429 GDMDVSTLSERPKGRVPIMTYWVKPDLMERVLKLVNREVDQGRQAYLICPLIEESEKLDV 488 G+MDVS + E P GR I TYW K D+++RVL V +E+ +GRQAY+ICPLIEESEKLDV Sbjct: 425 GEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGRQAYVICPLIEESEKLDV 484 Query: 489 QNAIDLHIQMSQAFPHY----KVGLLHGRMTPGEKDEVMRAFYNNEIQLLXXXXXXXXXX 544 QNAIDLH ++ HY +VGL+HGR++ EK+E+M F N++Q+L Sbjct: 485 QNAIDLHSMLTH---HYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGV 541 Query: 545 XXPNATLMIIMDADRFGLSQLHQLRGRVGRGQHASFCVLVADPKSEIGRERMTAMTDTDD 604 PNAT+M+I DA+RFGLSQLHQLRGRVGRG S+C+L+ADPKSE G+ERM MT+T+D Sbjct: 542 NVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPKSETGKERMRIMTETND 601 Query: 605 GFEVSRRDLELRGPGDFFGTKQSGLPEFRLADMTADFEVLEQARDDAAELLKETDFWTSA 664 GF +S +DLELRGPGDFFG+KQSGLPEF++ADM D+ LE AR DAA L+ FW + Sbjct: 602 GFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAAILVDSEAFWHND 661 Query: 665 DYAPLRTYLQNEQIFQGDIID 685 YA LRTYL +FQG+ +D Sbjct: 662 QYAALRTYLDGTGVFQGEKLD 682 >ref|NP_243361.1| ATP-dependent DNA helicase [Bacillus halodurans] pir||G83961 ATP-dependent DNA helicase recG [imported] - Bacillus halodurans (strain C-125) dbj|BAB06214.1| ATP-dependent DNA helicase [Bacillus halodurans] Length = 673 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/674 (52%), Positives = 484/674 (71%), Gaps = 4/674 (0%) Query: 14 QINGVSAQKQNELHAFGVFTVKDLLEYYPFRYDDFRPRSLSEIKHGDKATLVAKVIGIPV 73 ++ G+ + +L + +++V DLLE++PFRY+D++ R + EIKH ++AT+V V P Sbjct: 2 EVRGIGDETAKQLASLQLYSVFDLLEHFPFRYEDYQVRPIEEIKHDERATVVGTVQSEPT 61 Query: 74 LQRFGGK-SRLSCKMIAEPWMFTATWFNQHYVREQLTAQREIVITGKWDQKRNAITVTDY 132 ++ +G K +R+S +++ + TA +FN+ ++++QL +E+ +TGKWDQ R +TV + Sbjct: 62 VRYYGKKKNRMSVRVLVGHVLLTAVFFNRAFLKQQLKVGQEVTLTGKWDQHRLTLTVNEV 121 Query: 133 EFTDRGEGKIGTLQPVYSVGGKITQTWIRKIINQGLQQYGDLIPEILPHSIIWKYDFLSR 192 + + E T++P+YSV GK+T ++K I+ L+Q+G+ I + LP I +Y +S+ Sbjct: 122 KQGNHTER--ATVEPIYSVSGKLTSKTLKKYIHVALRQFGEQITDPLPPEIRERYKLVSK 179 Query: 193 KRAIATIHRPEDTREGQQGRRRMVYEELFLFQLKVQAFRVLNRGRMDGVVHTVDNATVRT 252 + A+ +H P D +Q RRRMVYEE FQLK+QAFR +NR + +G V+ V Sbjct: 180 REAVFHLHMPSDREALKQARRRMVYEEFLFFQLKMQAFRKVNREQSNGRAVKVNEQKVDQ 239 Query: 253 FVRSLPFELTDAQKRVELEILQDMRSPYCMNRLLQGDVGSGKTVLAAIALYATVKSGFQG 312 F+ +LPF LT+AQ++V EIL DM SPY MNRLLQGDVGSGKTV+AAI ++A V +G Q Sbjct: 240 FIAALPFSLTEAQEKVAGEILTDMSSPYRMNRLLQGDVGSGKTVVAAICMFAAVTAGKQA 299 Query: 313 ALMVPTEILAEQHMRSLTKMFEPFGITVGLLTGSVTGRKRKDLLASLQMGMLDIVVGTHA 372 ALMVPTEILAEQH +SL ++F P G+ + LLTGSV G++R+ + +++ G +D+V+GTHA Sbjct: 300 ALMVPTEILAEQHAQSLERLFAPSGVRLTLLTGSVKGKRRQAAVTAVKAGDVDVVIGTHA 359 Query: 373 LIQEDVFFRGLGMVVTDEQHRFGVNQRSILRRKGYNPDVLTMTATPIPRTLAITVFGDMD 432 LIQ+DV F LG+V+TDEQHRFGV QR LR KG PDVL MTATPIPRTLAI+ FGDMD Sbjct: 360 LIQDDVAFHDLGLVITDEQHRFGVEQRRALRDKGAYPDVLFMTATPIPRTLAISAFGDMD 419 Query: 433 VSTLSERPKGRVPIMTYWVKPDLMERVLKLVNREVDQGRQAYLICPLIEESEKLDVQNAI 492 VS +++ P GR I TYW K D++ RVL + +E+ +GRQAY+ICPLIEESEKLDVQNAI Sbjct: 420 VSIINQMPAGRKEIETYWAKHDMLTRVLDFMEKELAKGRQAYVICPLIEESEKLDVQNAI 479 Query: 493 DLHIQMSQAF-PHYKVGLLHGRMTPGEKDEVMRAFYNNEIQLLXXXXXXXXXXXXPNATL 551 D+H + Q F P ++VGL+HGR+ P EKD VM AF N+I++L PNAT+ Sbjct: 480 DVHSILQQHFEPRFQVGLMHGRLHPSEKDTVMTAFSENKIRILVSTTVVEVGVNVPNATI 539 Query: 552 MIIMDADRFGLSQLHQLRGRVGRGQHASFCVLVADPKSEIGRERMTAMTDTDDGFEVSRR 611 M+I DA+RFGL+QLHQLRGRVGRG+H S+C+L+ADPKSE+G+ERM MT+T+DGF +S R Sbjct: 540 MVIYDAERFGLAQLHQLRGRVGRGEHQSYCILLADPKSEVGKERMRIMTETNDGFTLSER 599 Query: 612 DLELRGPGDFFGTKQSGLPEFRLADMTADFEVLEQARDDAAELLKETDFWTSADYAPLRT 671 DLELRGPGDFFG KQSGLP+F++AD+ D+ LE AR DAA L+ FW+ Y L T Sbjct: 600 DLELRGPGDFFGAKQSGLPDFKVADVVHDYRALETARQDAATLVNSKTFWSDPKYRELVT 659 Query: 672 YLQNEQIFQGDIID 685 YLQ E + G+ +D Sbjct: 660 YLQAEGVLDGEKLD 673 >ref|NP_657824.1| DEXDc, DEAD-like helicases superfamily [Bacillus anthracis A2012] ref|NP_846235.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Ames] gb|AAP27721.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Ames] Length = 682 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/684 (52%), Positives = 478/684 (69%), Gaps = 16/684 (2%) Query: 10 IEVKQINGVSAQKQNELHAFGVFTVKDLLEYYPFRYDDFRPRSLSEIKHGDKATLVAKVI 69 + V + G+ + LH G++TV LLE++P+RY+D+ + L+E+KH ++ T+ KV Sbjct: 7 VPVTDVKGIGGETSELLHEMGIYTVSHLLEHFPYRYEDYAMKDLAEVKHDERVTVEGKVH 66 Query: 70 GIPVLQRFGGK-SRLSCKMIAEPWMFTATWFNQHYVREQLTAQREIVITGKWDQKRNAIT 128 P+LQ +G K SRL+ +++ ++ TA FN+ Y +++L + ITGKWDQ R I Sbjct: 67 SAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLNLDETVTITGKWDQHRQTIA 126 Query: 129 VTDYEFTDRGEGKI---GTLQPVYSVGGKITQTWIRKIINQGLQQYGDLIPEILPHSIIW 185 V++ F G + ++PVYSV GK+T +R+ I Q L++YGD I E+LP ++ Sbjct: 127 VSELHF-----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEVLPDGLLS 181 Query: 186 KYDFLSRKRAIATIHRPEDTREGQQGRRRMVYEELFLFQLKVQAFRVLNRGRMDGVVHTV 245 +Y L R A+ +H P + +Q RRR VYEE FLFQLK+Q R + R G + Sbjct: 182 RYKLLPRYEALRALHFPTGQEDLKQARRRFVYEEFFLFQLKMQTLRKMERENSKGTKKEI 241 Query: 246 DNATVRTFVRSLPFELTDAQKRVELEILQDMRSPYCMNRLLQGDVGSGKTVLAAIALYAT 305 + ++ F+ +LPF LT AQ+RV EI++DM SPY MNRLLQGDVGSGKTV+AAI LYA Sbjct: 242 PSEELQEFIDALPFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVGSGKTVVAAIGLYAA 301 Query: 306 VKSGFQGALMVPTEILAEQHMRSLTKMFEPFGITVGLLTGSVTGRKRKDLLASLQMGMLD 365 + +QGALMVPTEILAEQH +SL + F FG+ V LLT SV G +R+++LA L+ G +D Sbjct: 302 KLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVRRREILAKLEQGEID 361 Query: 366 IVVGTHALIQEDVFFRGLGMVVTDEQHRFGVNQRSILRRKGYNPDVLTMTATPIPRTLAI 425 I+VGTHALIQ++V F LG+V+TDEQHRFGV QR +LR KG +PDVL MTATPIPRTLAI Sbjct: 362 ILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMTATPIPRTLAI 421 Query: 426 TVFGDMDVSTLSERPKGRVPIMTYWVKPDLMERVLKLVNREVDQGRQAYLICPLIEESEK 485 T FG+MDVS + E P GR I TYW K D+++RVL V +E+++GRQAY+ICPLIEESEK Sbjct: 422 TAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEINKGRQAYVICPLIEESEK 481 Query: 486 LDVQNAIDLHIQMSQAFPHY----KVGLLHGRMTPGEKDEVMRAFYNNEIQLLXXXXXXX 541 LDVQNAIDLH ++ HY +VGL+HGR++ EK+E+M F N++Q+L Sbjct: 482 LDVQNAIDLHSMLTH---HYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVE 538 Query: 542 XXXXXPNATLMIIMDADRFGLSQLHQLRGRVGRGQHASFCVLVADPKSEIGRERMTAMTD 601 PNAT+M+I DA+RFGLSQLHQLRGRVGRG S+C+L+ADPKSE G+ERM MT+ Sbjct: 539 VGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPKSETGKERMRIMTE 598 Query: 602 TDDGFEVSRRDLELRGPGDFFGTKQSGLPEFRLADMTADFEVLEQARDDAAELLKETDFW 661 T+DGF +S +DLELRGPGDFFG+KQSGLPEF++ADM D+ LE AR DAA L+ FW Sbjct: 599 TNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAALLVDSEAFW 658 Query: 662 TSADYAPLRTYLQNEQIFQGDIID 685 + YA LRTYL +FQG+ +D Sbjct: 659 HNDQYASLRTYLDGTGVFQGEKLD 682 >ref|NP_980194.1| ATP-dependent DNA helicase RecG [Bacillus cereus ATCC 10987] gb|AAS42802.1| ATP-dependent DNA helicase RecG [Bacillus cereus ATCC 10987] Length = 682 Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/684 (52%), Positives = 476/684 (69%), Gaps = 16/684 (2%) Query: 10 IEVKQINGVSAQKQNELHAFGVFTVKDLLEYYPFRYDDFRPRSLSEIKHGDKATLVAKVI 69 + V + G+ + LH G++TV LLE++P+RY+D+ + L+E+KH ++ T+ KV Sbjct: 7 VPVTDVKGIGGETSELLHEMGIYTVSHLLEHFPYRYEDYAMKDLAEVKHDERVTVEGKVH 66 Query: 70 GIPVLQRFGGK-SRLSCKMIAEPWMFTATWFNQHYVREQLTAQREIVITGKWDQKRNAIT 128 P+LQ +G K SRL+ +++ ++ TA FN+ Y +++L + +TGKWDQ R I Sbjct: 67 SAPLLQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLNLDETVTVTGKWDQHRQTIA 126 Query: 129 VTDYEFTDRGEGKI---GTLQPVYSVGGKITQTWIRKIINQGLQQYGDLIPEILPHSIIW 185 V++ F G + ++PVYSV GK+T +R+ I Q L++YGD I E+LP ++ Sbjct: 127 VSELHF-----GPVVRQQEVEPVYSVKGKLTVKQMRRFIAQALKEYGDSIVEVLPDGLLS 181 Query: 186 KYDFLSRKRAIATIHRPEDTREGQQGRRRMVYEELFLFQLKVQAFRVLNRGRMDGVVHTV 245 +Y L R A+ +H P + +Q RRR VYEE FLFQLK+Q R + R G + Sbjct: 182 RYKLLPRYEALRALHFPSGQEDLKQARRRFVYEEFFLFQLKMQTLRKMERENSKGTKKEI 241 Query: 246 DNATVRTFVRSLPFELTDAQKRVELEILQDMRSPYCMNRLLQGDVGSGKTVLAAIALYAT 305 + ++ F+ +LPF LT AQ RV EI++DM SPY MNRLLQGDVGSGKTV+AAI LYA Sbjct: 242 PSEELQEFIDALPFPLTGAQSRVVDEIMKDMTSPYRMNRLLQGDVGSGKTVVAAIGLYAA 301 Query: 306 VKSGFQGALMVPTEILAEQHMRSLTKMFEPFGITVGLLTGSVTGRKRKDLLASLQMGMLD 365 + +QGALMVPTEILAEQH +SL + F FG+ V LLT SV G +R+++LA L+ G +D Sbjct: 302 KLAHYQGALMVPTEILAEQHYQSLAETFSHFGMKVELLTSSVKGVRRREILAKLEQGEID 361 Query: 366 IVVGTHALIQEDVFFRGLGMVVTDEQHRFGVNQRSILRRKGYNPDVLTMTATPIPRTLAI 425 I+VGTHALIQ++V F LG+V+TDEQHRFGV QR +LR KG +PDVL MTATPIPRTLAI Sbjct: 362 ILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMTATPIPRTLAI 421 Query: 426 TVFGDMDVSTLSERPKGRVPIMTYWVKPDLMERVLKLVNREVDQGRQAYLICPLIEESEK 485 T FG+MDVS + E P GR I TYW K D+++RVL V +E+ +GRQAY+ICPLIEESEK Sbjct: 422 TAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEIKKGRQAYVICPLIEESEK 481 Query: 486 LDVQNAIDLHIQMSQAFPHY----KVGLLHGRMTPGEKDEVMRAFYNNEIQLLXXXXXXX 541 LDVQNAIDLH ++ HY +VGL+HGR++ EK+E+M F N++Q+L Sbjct: 482 LDVQNAIDLHSMLTH---HYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVE 538 Query: 542 XXXXXPNATLMIIMDADRFGLSQLHQLRGRVGRGQHASFCVLVADPKSEIGRERMTAMTD 601 PNAT+M+I DA+RFGLSQLHQLRGRVGRG S+C+L+ADPKSE G+ERM MT+ Sbjct: 539 VGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPKSETGKERMRIMTE 598 Query: 602 TDDGFEVSRRDLELRGPGDFFGTKQSGLPEFRLADMTADFEVLEQARDDAAELLKETDFW 661 T+DGF +S +DLELRGPGDFFG+KQSGLPEF++ADM D+ LE AR DAA L+ FW Sbjct: 599 TNDGFVLSEKDLELRGPGDFFGSKQSGLPEFKVADMVHDYRALETARQDAALLVDSEAFW 658 Query: 662 TSADYAPLRTYLQNEQIFQGDIID 685 + YA LRTYL +FQG+ +D Sbjct: 659 HNDQYASLRTYLDGTGVFQGEKLD 682 >ref|NP_389469.1| similar to ATP-dependent DNA helicase [Bacillus subtilis] sp|O34942|RECG_BACSU ATP-dependent DNA helicase recG pir||H69879 ATP-dependent DNA helicase homolog ylpB - Bacillus subtilis emb|CAA74246.1| putative RecG protein [Bacillus subtilis] emb|CAB13460.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str. 168] Length = 682 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/673 (52%), Positives = 463/673 (68%), Gaps = 4/673 (0%) Query: 12 VKQINGVSAQKQNELHAFGVFTVKDLLEYYPFRYDDFRPRSLSEIKHGDKATLVAKVIGI 71 + I G+ + + L+ G++ + DLL Y+P+RYDD+ R L E+KH ++ T+ KV Sbjct: 9 IANIKGIGPETEKTLNELGIYDISDLLNYFPYRYDDYELRDLEEVKHDERVTVEGKVHSE 68 Query: 72 PVLQRFGGK-SRLSCKMIAEPWMFTATWFNQHYVREQLTAQREIVITGKWDQKRNAITVT 130 P L +G K +RL+ +++ ++ TA FN+ Y++++L+ + ++GKWD+ R I+V Sbjct: 69 PSLTYYGKKRNRLTFRLLVGHYLITAVCFNRPYLKKKLSLGSVVTVSGKWDKHRQTISVQ 128 Query: 131 DYEFTDRGEGKIGTLQPVYSVGGKITQTWIRKIINQGLQQYGDLIPEILPHSIIWKYDFL 190 + + E K +++PVYSV +T +R+ I Q L QY D +P+ LP + Y Sbjct: 129 ELKNGPHQEDK--SIEPVYSVKENVTVKMMRRFIQQALTQYADSLPDPLPEKLRKSYKLP 186 Query: 191 SRKRAIATIHRPEDTREGQQGRRRMVYEELFLFQLKVQAFRVLNRGRMDGVVHTVDNATV 250 +A+ +H+PE + RRR VYEE LFQLK+QAFR R + G+ N + Sbjct: 187 DYYQALKAMHQPETREALKLARRRFVYEEFLLFQLKMQAFRKAEREQTQGIRQRFSNEEL 246 Query: 251 RTFVRSLPFELTDAQKRVELEILQDMRSPYCMNRLLQGDVGSGKTVLAAIALYATVKSGF 310 F++SLPF LT+AQ RV EI DM SPY MNRLLQGDVGSGKT +AAIALYA + SG+ Sbjct: 247 MRFIKSLPFPLTNAQSRVLREITADMSSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGY 306 Query: 311 QGALMVPTEILAEQHMRSLTKMFEPFGITVGLLTGSVTGRKRKDLLASLQMGMLDIVVGT 370 QGALMVPTEILAEQH SL +FE + ++V LLT SV G++RK+LL L G +DI+VGT Sbjct: 307 QGALMVPTEILAEQHADSLVSLFEKWDVSVALLTSSVKGKRRKELLERLAAGEIDILVGT 366 Query: 371 HALIQEDVFFRGLGMVVTDEQHRFGVNQRSILRRKGYNPDVLTMTATPIPRTLAITVFGD 430 HALIQ++V F+ L +V+TDEQHRFGV QR LR KG +PDVL MTATPIPRTLAITVFG+ Sbjct: 367 HALIQDEVEFKALSLVITDEQHRFGVEQRKKLRNKGQDPDVLFMTATPIPRTLAITVFGE 426 Query: 431 MDVSTLSERPKGRVPIMTYWVKPDLMERVLKLVNREVDQGRQAYLICPLIEESEKLDVQN 490 MDVS + E P GR I TYWVK D+++R+L V +E+ QGRQAY+ICPLIEES+KLDVQN Sbjct: 427 MDVSVIDEMPAGRKRIETYWVKHDMLDRILAFVEKELKQGRQAYIICPLIEESDKLDVQN 486 Query: 491 AIDLHIQMSQAF-PHYKVGLLHGRMTPGEKDEVMRAFYNNEIQLLXXXXXXXXXXXXPNA 549 AID++ +S F + VGL+HG++ EKD+VMR F N Q+L PNA Sbjct: 487 AIDVYNMLSDIFRGKWNVGLMHGKLHSDEKDQVMREFSANHCQILVSTTVVEVGVNVPNA 546 Query: 550 TLMIIMDADRFGLSQLHQLRGRVGRGQHASFCVLVADPKSEIGRERMTAMTDTDDGFEVS 609 T+M+I DADRFGLSQLHQLRGRVGRG+H SFC+L+ADPKSE G+ERM M++T+DGFE+S Sbjct: 547 TIMVIYDADRFGLSQLHQLRGRVGRGEHQSFCILMADPKSETGKERMRIMSETNDGFELS 606 Query: 610 RRDLELRGPGDFFGTKQSGLPEFRLADMTADFEVLEQARDDAAELLKETDFWTSADYAPL 669 +DLELRGPGDFFG KQSG+PEF++ADM D+ LE AR DAA L+ FW +YA L Sbjct: 607 EKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRALETARQDAANLVASDAFWKEPEYAVL 666 Query: 670 RTYLQNEQIFQGD 682 R L + G+ Sbjct: 667 RDELLKSGVMDGE 679 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.138 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 949,487,955 Number of extensions: 38693484 Number of successful extensions: 90223 Number of sequences better than 1.0e-05: 1320 Number of HSP's gapped: 87933 Number of HSP's successfully gapped: 1326 Length of query: 685 Length of database: 757,237,578 Length adjustment: 133 Effective length of query: 552 Effective length of database: 396,129,411 Effective search space: 218663434872 Effective search space used: 218663434872 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)