BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0025.p (164 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_388867.1| similar to hypothetical proteins [Bacillus subt... 167 6e-41 ref|ZP_00183951.1| hypothetical protein Exigu058701 [Exiguobacte... 155 3e-37 ref|NP_653509.1| TrkA, Potassium channel [Bacillus anthracis A20... 152 4e-36 ref|NP_834712.1| TrkA C-terminal domain protein [Bacillus cereus... 150 1e-35 ref|NP_981481.1| trkA domain protein [Bacillus cereus ATCC 10987... 150 1e-35 >ref|NP_388867.1| similar to hypothetical proteins [Bacillus subtilis] pir||F69819 conserved hypothetical protein yhaT - Bacillus subtilis emb|CAA74452.1| hypothetical protein [Bacillus subtilis] emb|CAB12826.1| yhaT [Bacillus subtilis subsp. subtilis str. 168] Length = 165 Score = 167 bits (424), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 80/164 (48%), Positives = 113/164 (68%) Query: 1 MNYRESDLPGIGKKFVMQTRSGDKLVVIVHDDGRRELYHFEYDDPDQSISMITLDDDEAR 60 MN +E+DLPGIGKKF ++TRS +K+ +I+HDDGRRE+Y F DPD+ +S I+LDD EAR Sbjct: 1 MNIKENDLPGIGKKFEIETRSHEKMTIIIHDDGRREIYRFNDRDPDELLSNISLDDSEAR 60 Query: 61 YISAIVGGITYKPKALESIEVALDDLIIEWYRLEQDFKCIGHSIGELDXXXXXXXXXXXX 120 I+AI+GG+ YKP+ALESIE+A DLIIEW+++E+ K IG ++GELD Sbjct: 61 QIAAILGGMVYKPQALESIEMAFSDLIIEWFKVEKGAKSIGRTLGELDVRQNYDVTVIAI 120 Query: 121 XEKNHQKHINPGPEVLLPAECTVVAAGERHQHKQFKHILRNGCG 164 + N +K +NPG + ++ T+V +GER K+ H +G G Sbjct: 121 IKHNQEKLLNPGADSIIEENDTLVLSGERKHLKKLIHDFLSGEG 164 >ref|ZP_00183951.1| hypothetical protein Exigu058701 [Exiguobacterium sp. 255-15] Length = 166 Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 77/159 (48%), Positives = 103/159 (64%) Query: 1 MNYRESDLPGIGKKFVMQTRSGDKLVVIVHDDGRRELYHFEYDDPDQSISMITLDDDEAR 60 M+ RE DLPGIG+KF T GDK+VVIVHDDGRRE++H++ DD D+SIS +T +D EAR Sbjct: 1 MDMREVDLPGIGRKFEGITTRGDKVVVIVHDDGRREMHHYDDDDFDESISSVTFNDAEAR 60 Query: 61 YISAIVGGITYKPKALESIEVALDDLIIEWYRLEQDFKCIGHSIGELDXXXXXXXXXXXX 120 ++ I+GG+ YKPK LE IE+A DDL+IEW+++ QD +IGELD Sbjct: 61 QMAGILGGLAYKPKDLEKIELAFDDLVIEWFKIGQDSAVNNRTIGELDVRNQYDISIIAV 120 Query: 121 XEKNHQKHINPGPEVLLPAECTVVAAGERHQHKQFKHIL 159 + + K +NPGPE L A T+V +GER + L Sbjct: 121 LKHDKSKTLNPGPETRLEAGDTIVLSGERQNVRHITKAL 159 >ref|NP_653509.1| TrkA, Potassium channel [Bacillus anthracis A2012] ref|NP_847466.1| trkA domain protein [Bacillus anthracis str. Ames] gb|AAP28952.1| trkA domain protein [Bacillus anthracis str. Ames] Length = 169 Score = 152 bits (383), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 72/164 (43%), Positives = 111/164 (67%), Gaps = 1/164 (0%) Query: 1 MNYRESDLPGIGKKFVMQTRSGDKLVVIVHDDGRRELYHFEYDDPDQSISMITLDDDEAR 60 MN RES+LPGIG KF + T+ +K+V+++HDDGRRE+YHF+ D ++SIS I+L D EAR Sbjct: 1 MNIRESELPGIGYKFQIVTKGNEKMVIVIHDDGRREMYHFD-SDYEESISSISLRDSEAR 59 Query: 61 YISAIVGGITYKPKALESIEVALDDLIIEWYRLEQDFKCIGHSIGELDXXXXXXXXXXXX 120 I+AI+GG+ YKP+ALE++E+ + L IEW+++E++ IG +IG+L+ Sbjct: 60 QIAAILGGMVYKPRALENVEMVFEGLAIEWFKVEKEAPAIGKTIGDLEIRKTYSVTIIAV 119 Query: 121 XEKNHQKHINPGPEVLLPAECTVVAAGERHQHKQFKHILRNGCG 164 +KN +K NPGPE ++ +V +GER + K+ + L + G Sbjct: 120 MKKNMKKLFNPGPETVIEEGDMLVVSGEREEIKKIINELLSNRG 163 >ref|NP_834712.1| TrkA C-terminal domain protein [Bacillus cereus ATCC 14579] gb|AAP11913.1| TrkA C-terminal domain protein [Bacillus cereus ATCC 14579] Length = 164 Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 72/164 (43%), Positives = 109/164 (66%), Gaps = 1/164 (0%) Query: 1 MNYRESDLPGIGKKFVMQTRSGDKLVVIVHDDGRRELYHFEYDDPDQSISMITLDDDEAR 60 MN RES+LPGIG KF + T+ +K+V+++HDDGRRE+YHF+ D ++SIS I+L D EAR Sbjct: 1 MNIRESELPGIGYKFQIVTKGNEKMVIVIHDDGRREMYHFD-SDHEESISSISLRDSEAR 59 Query: 61 YISAIVGGITYKPKALESIEVALDDLIIEWYRLEQDFKCIGHSIGELDXXXXXXXXXXXX 120 I+AI+GG+ YKP+ALE++E+ + L IEW+++E IG +IG+L+ Sbjct: 60 QIAAILGGMVYKPRALENVEMVFEGLAIEWFKVENTAPAIGKTIGDLEIRKTYSVTIIAV 119 Query: 121 XEKNHQKHINPGPEVLLPAECTVVAAGERHQHKQFKHILRNGCG 164 +KN +K NPGPE ++ +V +GER + K+ + L + G Sbjct: 120 MKKNMKKLFNPGPETVIEEGDMLVVSGEREEIKKIINELLSNRG 163 >ref|NP_981481.1| trkA domain protein [Bacillus cereus ATCC 10987] gb|AAS44089.1| trkA domain protein [Bacillus cereus ATCC 10987] Length = 165 Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 72/164 (43%), Positives = 109/164 (66%), Gaps = 1/164 (0%) Query: 1 MNYRESDLPGIGKKFVMQTRSGDKLVVIVHDDGRRELYHFEYDDPDQSISMITLDDDEAR 60 MN RES+LPGIG KF + T+ +K+V+++HDDGRRE+YHF+ D ++SIS I+L D EAR Sbjct: 1 MNIRESELPGIGYKFQIVTKGNEKMVIVIHDDGRREMYHFD-SDHEESISSISLRDSEAR 59 Query: 61 YISAIVGGITYKPKALESIEVALDDLIIEWYRLEQDFKCIGHSIGELDXXXXXXXXXXXX 120 I+AI+GG+ YKP+ALE++E+ + L IEW+++E IG +IG+L+ Sbjct: 60 QIAAILGGMVYKPRALENVEMVFEGLAIEWFKVENAAPAIGKTIGDLEIRKTYSVTIIAV 119 Query: 121 XEKNHQKHINPGPEVLLPAECTVVAAGERHQHKQFKHILRNGCG 164 +KN +K NPGPE ++ +V +GER + K+ + L + G Sbjct: 120 MKKNMKKLFNPGPETVIEEGDMLVVSGEREEIKKIINELLSNRG 163 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.140 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 238,845,014 Number of extensions: 8534666 Number of successful extensions: 17490 Number of sequences better than 1.0e-05: 14 Number of HSP's gapped: 17480 Number of HSP's successfully gapped: 14 Length of query: 164 Length of database: 757,237,578 Length adjustment: 116 Effective length of query: 48 Effective length of database: 442,286,094 Effective search space: 21229732512 Effective search space used: 21229732512 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 121 (51.2 bits)