BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0023.p (121 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_815618.1| cation-transporting ATPase, E1-E2 family [Enter... 135 3e-31 ref|NP_784341.1| cation transporting P-type ATPase [Lactobacillu... 129 2e-29 ref|NP_621740.1| Cation transport ATPases [Thermoanaerobacter te... 125 3e-28 ref|NP_562118.1| probable calcium-transporting ATPase [Clostridi... 124 5e-28 ref|ZP_00047219.1| COG0474: Cation transport ATPase [Lactobacill... 123 1e-27 >ref|NP_815618.1| cation-transporting ATPase, E1-E2 family [Enterococcus faecalis V583] gb|AAO81688.1| cation-transporting ATPase, E1-E2 family [Enterococcus faecalis V583] Length = 901 Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 69/101 (68%), Positives = 79/101 (78%), Gaps = 3/101 (2%) Query: 19 TSISLAVAAIPEGLPAIVTIILALGVQRMAKRKAIIRKLPAVETLGSTEIICSDKTGTLA 78 TSISLAVAAIPEGLPAIVTIILALG Q+MAK+ AI+RKLPAVETLGST+IICSDKTGTL Sbjct: 283 TSISLAVAAIPEGLPAIVTIILALGTQKMAKKNAIVRKLPAVETLGSTDIICSDKTGTLT 342 Query: 79 LNKMTVEKLYVDGQKVDAGSSIDGLQGRERLVQAMTLCNDS 119 LN+MTVE LY DGQ + A + I ++ M ND+ Sbjct: 343 LNQMTVEALYTDGQVLSASTEI---PADNMALKIMNFTNDT 380 >ref|NP_784341.1| cation transporting P-type ATPase [Lactobacillus plantarum WCFS1] emb|CAD63182.1| cation transporting P-type ATPase [Lactobacillus plantarum WCFS1] Length = 884 Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 70/101 (69%), Positives = 79/101 (78%), Gaps = 2/101 (1%) Query: 19 TSISLAVAAIPEGLPAIVTIILALGVQRMAKRKAIIRKLPAVETLGSTEIICSDKTGTLA 78 T+ISLAVAAIPEGLPAIVTI LALG QRMAKR A++RKLPAVETLGST+II SDKTGTL Sbjct: 276 TAISLAVAAIPEGLPAIVTITLALGTQRMAKRHALVRKLPAVETLGSTDIIASDKTGTLT 335 Query: 79 LNKMTVEKLYVDGQKVDAGSSIDGLQGRERLVQAMTLCNDS 119 NKMTVEKL V+ + VDA ++ L L Q M L ND+ Sbjct: 336 QNKMTVEKLVVNQELVDARAT--ELPLDSHLAQVMILSNDT 374 >ref|NP_621740.1| Cation transport ATPases [Thermoanaerobacter tengcongensis] gb|AAM23344.1| Cation transport ATPases [Thermoanaerobacter tengcongensis] Length = 870 Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 65/101 (64%), Positives = 79/101 (78%), Gaps = 1/101 (0%) Query: 19 TSISLAVAAIPEGLPAIVTIILALGVQRMAKRKAIIRKLPAVETLGSTEIICSDKTGTLA 78 T++SLAVAAIPEGLPAI+TI LALGVQ+M+K+ AIIRKLPAVETLGST +ICSDKTGTL Sbjct: 274 TAVSLAVAAIPEGLPAIITITLALGVQKMSKKNAIIRKLPAVETLGSTSVICSDKTGTLT 333 Query: 79 LNKMTVEKLYVDGQKVDAGSSIDGLQGRERLVQAMTLCNDS 119 NKMTV K YV+ +KV+A + Q L++ LC D+ Sbjct: 334 QNKMTVVKFYVNDRKVNAQKD-EVKQEDYFLLKNAALCTDA 373 >ref|NP_562118.1| probable calcium-transporting ATPase [Clostridium perfringens] dbj|BAB80908.1| probable calcium-transporting ATPase [Clostridium perfringens str. 13] Length = 868 Score = 124 bits (312), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 65/101 (64%), Positives = 72/101 (71%) Query: 19 TSISLAVAAIPEGLPAIVTIILALGVQRMAKRKAIIRKLPAVETLGSTEIICSDKTGTLA 78 TSISLAVAAIPEGLPAIV I+LALGVQRM K+ AIIRKLPAVETLGS IICSDKTGTL Sbjct: 272 TSISLAVAAIPEGLPAIVAIVLALGVQRMVKKNAIIRKLPAVETLGSVSIICSDKTGTLT 331 Query: 79 LNKMTVEKLYVDGQKVDAGSSIDGLQGRERLVQAMTLCNDS 119 NKMTV +Y + + + LV M LCND+ Sbjct: 332 QNKMTVTTVYTNDSYIKESEFNLNDNESKLLVDCMVLCNDA 372 >ref|ZP_00047219.1| COG0474: Cation transport ATPase [Lactobacillus gasseri] Length = 842 Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 66/107 (61%), Positives = 77/107 (71%), Gaps = 17/107 (15%) Query: 20 SISLAVAAIPEGLPAIVTIILALGVQRMAKRKAIIRKLPAVETLGSTEIICSDKTGTLAL 79 ++SLAVAAIPEGLPAIVTIILALG Q MAK +AI+RKLPAVETLG+T+IICSDKTGTL Sbjct: 235 AVSLAVAAIPEGLPAIVTIILALGTQTMAKHRAIVRKLPAVETLGATDIICSDKTGTLTQ 294 Query: 80 NKMTVEKLYVDGQKVDAGSSIDGLQGRERLVQ-------AMTLCNDS 119 N+MTVEK+Y DG+ L E V+ AM L ND+ Sbjct: 295 NQMTVEKVYYDGE----------LHNDEEAVKVDNPAMMAMILANDT 331 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.133 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 126,845,900 Number of extensions: 4110822 Number of successful extensions: 12324 Number of sequences better than 1.0e-05: 898 Number of HSP's gapped: 12306 Number of HSP's successfully gapped: 898 Length of query: 121 Length of database: 757,237,578 Length adjustment: 85 Effective length of query: 36 Effective length of database: 526,454,163 Effective search space: 18952349868 Effective search space used: 18952349868 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)