BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0018.p (299 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00099484.1| COG4120: ABC-type uncharacterized transport s... 218 1e-55 ref|NP_601449.1| ABC-type transporter, permease component [Coryn... 210 4e-53 ref|NP_252526.1| probable permease of ABC transporter [Pseudomon... 206 4e-52 ref|ZP_00170697.1| hypothetical protein Raeut197301 [Ralstonia e... 203 5e-51 ref|NP_884026.1| putative transmembrane component of ABC transpo... 199 9e-50 >ref|ZP_00099484.1| COG4120: ABC-type uncharacterized transport system, permease component [Desulfitobacterium hafniense] Length = 312 Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 129/296 (43%), Positives = 172/296 (58%), Gaps = 11/296 (3%) Query: 1 VEMGLLYAFMALGVYITFRILDFPDLTVDGSFTTGGAIAAVMITHGYSPWLATVXXXXXX 60 +E+GL+YA M LGVY+TFR+L++ DL+V+GSFT G A AA +I GY+PWLAT Sbjct: 14 LELGLMYAIMVLGVYLTFRVLNYADLSVEGSFTLGAATAATLIFQGYNPWLATAIAFFVG 73 Query: 61 XXXXXXXXXXHTKGKINGLLSGILMMIALYSINLRILVKPNVSLMGEDSLFTSINPLLVM 120 HTK KI LLSGIL M AL+SINLR++ K N+SL+ ++FT M Sbjct: 74 CIAGIFTGIFHTKFKITALLSGILTMTALWSINLRVMGKANISLLKTRTIFTDFKNFPGM 133 Query: 121 P---------FVMIAVKIXXXXXXXXXXXXXXXATGDNARMIRSFGVNTDTTTILGISLS 171 +I + I ATGDN MIRS GVNTD ILG+ LS Sbjct: 134 NQYGTLILGLITIIILGILIYLFLNTEIGLALRATGDNELMIRSLGVNTDVMKILGLGLS 193 Query: 172 NGMVALSGALIAQYSSFADSTMGIGMIVIGLASVIIGEAIFGAGNVFRATLAVVLGSIVY 231 NG+VA SG+ +AQ+ FAD++MG+GMIV GLASVIIGE + G ++ R LAV+ G I+Y Sbjct: 194 NGLVAFSGSFVAQHQQFADASMGVGMIVAGLASVIIGEVLVGTSSIGRTILAVICGGIIY 253 Query: 232 RIVVALALRVPWLQASDLKXXXXXXXXXXXXFPSIQ-RFMKQNRLARRRSIELANQ 286 R ++A+ LR+ L+ +DLK PS++ +F N R+ AN Sbjct: 254 RTIIAIVLRLG-LEPTDLKLLTAVIVLIALVSPSLKSKFSAFNGGILRKGDSYANS 308 >ref|NP_601449.1| ABC-type transporter, permease component [Corynebacterium glutamicum ATCC 13032] dbj|BAB99643.1| ABC-type transporter, permease components [Corynebacterium glutamicum ATCC 13032] emb|CAF20591.1| branched-chain amino acid ABC-type transport system, permease component [Corynebacterium glutamicum ATCC 13032] Length = 296 Score = 210 bits (534), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 135/291 (46%), Positives = 179/291 (61%), Gaps = 11/291 (3%) Query: 2 EMGLLYAFMALGVYITFRILDFPDLTVDGSFTTGGAIAAVMITHGYSPWLATVXXXXXXX 61 E GLLY +ALGVY+TFR+L+FPDLTVDGS TTG A AA + G+ P +AT Sbjct: 6 EFGLLYGVVALGVYLTFRVLNFPDLTVDGSLTTGAATAATALMSGWPPLMATAAGFVTGF 65 Query: 62 XXXXXXXXXHTKGKINGLLSGILMMIALYSINLRILVKPNVSLMGEDSLFTSINPLLVM- 120 HTKGKI+GLL+GIL MIAL+S+NLRI+ NV L+ D+LFT + ++ Sbjct: 66 IAGMITGLLHTKGKIDGLLAGILTMIALWSVNLRIMGGANVPLLRTDNLFTPLRDAGLLG 125 Query: 121 ----PFVM-IAVKIXXXXXXXXXXX---XXXXATGDNARMIRSFGVNTDTTTILGISLSN 172 P ++ +AV I +TGDN M++SFGV+TD T IL ISLSN Sbjct: 126 TWAGPAILAVAVGILGLIVIWFLNTDIGLSLRSTGDNGPMVQSFGVSTDFTKILTISLSN 185 Query: 173 GMVALSGALIAQYSSFADSTMGIGMIVIGLASVIIGEAIFGAGNVFRATLAVVLGSIVYR 232 G V L+GALIAQY FAD +MGIG+IVIGLASVI+G+AIFG V+ A LAV++G+I YR Sbjct: 186 GFVGLAGALIAQYQGFADISMGIGLIVIGLASVILGQAIFGQRRVWLAVLAVIVGAIAYR 245 Query: 233 IVVALALRVPWLQASDLKXXXXXXXXXXXXFPSIQ-RFMKQNRLARRRSIE 282 +++ ALRV L +D+K P + +F K + + ++E Sbjct: 246 LIIFAALRVG-LDPNDMKAISAILVVVAMLLPRWRAKFSKAPKPKQPVAVE 295 >ref|NP_252526.1| probable permease of ABC transporter [Pseudomonas aeruginosa PA01] ref|ZP_00137258.1| COG4120: ABC-type uncharacterized transport system, permease component [Pseudomonas aeruginosa UCBPP-PA14] pir||F83165 probable permease of ABC transporter PA3837 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG07224.1| probable permease of ABC transporter [Pseudomonas aeruginosa PAO1] Length = 296 Score = 206 bits (525), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 128/289 (44%), Positives = 173/289 (59%), Gaps = 15/289 (5%) Query: 1 VEMGLLYAFMALGVYITFRILDFPDLTVDGSFTTGGAIAAVMITHGYSPWLATVXXXXXX 60 +E+GL+++ +ALGV+I+FR+L FPDLTVDGSF GGA+ A +I G+ P+ AT+ Sbjct: 10 LEIGLIFSLVALGVFISFRLLRFPDLTVDGSFPLGGAVCATLIALGWDPYSATLAATAAG 69 Query: 61 XXXXXXXXXXHTKGKINGLLSGILMMIALYSINLRILVKPNVSLMGEDSLFTSINPL--- 117 + K KI LL+ ILMMIALYSINLRI+ KPNV L+ E +LFT + P Sbjct: 70 ALAGLATGLLNVKLKIMDLLASILMMIALYSINLRIMGKPNVPLIAEPTLFTLLQPEWLS 129 Query: 118 ------LVMPFVMIAVKIXXXXXXXXXXXXXXXATGDNARMIRSFGVNTDTTTILGISLS 171 L++ F++IA K+ ATG N RM R+ GVNT +LG+++S Sbjct: 130 DYVFRPLLLVFIVIAAKLLLDWFFTTQKGLAIRATGSNPRMARAQGVNTGGMILLGMAIS 189 Query: 172 NGMVALSGALIAQYSSFADSTMGIGMIVIGLASVIIGEAIFGAGNVFRATLAVVLGSIVY 231 N +VAL+GAL AQ AD +MGIG IVIGLA+VI+GE+I + + ATLAV+LG+IVY Sbjct: 190 NALVALAGALFAQTQGGADISMGIGTIVIGLAAVIVGESILPSRRLILATLAVILGAIVY 249 Query: 232 RIVVALALRVPW--LQASDLKXXXXXXXXXXXXFPSIQRFMKQNRLARR 278 R +ALAL + LQA DL P MK+ L ++ Sbjct: 250 RFFIALALNSDFIGLQAQDLNLVTAVLVTVALVIP----MMKKRLLGKK 294 >ref|ZP_00170697.1| hypothetical protein Raeut197301 [Ralstonia eutropha JMP134] Length = 298 Score = 203 bits (516), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 125/286 (43%), Positives = 172/286 (60%), Gaps = 13/286 (4%) Query: 1 VEMGLLYAFMALGVYITFRILDFPDLTVDGSFTTGGAIAAVMITHGYSPWLATVXXXXXX 60 +E+GL+++ +ALGV I+FRIL+FPDLTVDGSF GGA+AA +I G P++AT Sbjct: 10 LEIGLIFSLVALGVLISFRILNFPDLTVDGSFPLGGAVAATLIAAGQDPFVATAVAIVAG 69 Query: 61 XXXXXXXXXXHTKGKINGLLSGILMMIALYSINLRILVKPNVSLMGEDSLFTSINP---- 116 + + KI LL+ ILMMIALYS+NLRI+ +PNV L+ E ++FT + P Sbjct: 70 ALAGFITGWLNVRLKIMDLLASILMMIALYSVNLRIMGRPNVPLITEPTMFTILQPDWMP 129 Query: 117 -----LLVMPFVMIAVKIXXXXXXXXXXXXXXXATGDNARMIRSFGVNTDTTTILGISLS 171 LV+ V++ KI ATG N RM R+ G+ T T+ G++LS Sbjct: 130 DYVLRPLVLFIVVVVAKIGLDWFFSSQLGLAMRATGANPRMARAQGIATGRATLAGMALS 189 Query: 172 NGMVALSGALIAQYSSFADSTMGIGMIVIGLASVIIGEAIFGAGNVFRATLAVVLGSIVY 231 NG+VAL+GAL AQ +D +MGIG IVIGLA+VIIGE+I A + ATLAVVLG+I+Y Sbjct: 190 NGLVALAGALFAQTQGGSDISMGIGTIVIGLAAVIIGESILPARRLVWATLAVVLGAILY 249 Query: 232 RIVVALALRVPW--LQASDLKXXXXXXXXXXXXFPSIQR--FMKQN 273 R +ALAL + L+A DL P+ ++ F ++N Sbjct: 250 RFFIALALNSDFIGLKAQDLNLVTAALVTIALVLPATRKKLFARKN 295 >ref|NP_884026.1| putative transmembrane component of ABC transporter [Bordetella parapertussis 12822] emb|CAE37054.1| putative transmembrane component of ABC transporter [Bordetella parapertussis] Length = 296 Score = 199 bits (505), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 120/279 (43%), Positives = 168/279 (60%), Gaps = 11/279 (3%) Query: 1 VEMGLLYAFMALGVYITFRILDFPDLTVDGSFTTGGAIAAVMITHGYSPWLATVXXXXXX 60 +E+GL+++ +ALGV I+FR+L FPDLTVDGSF GGA+AA++I GY P+ +T+ Sbjct: 10 LEIGLIFSLVALGVLISFRLLRFPDLTVDGSFPLGGAVAAILIAAGYDPFTSTIVATLAG 69 Query: 61 XXXXXXXXXXHTKGKINGLLSGILMMIALYSINLRILVKPNVSLMGEDSLFTSINPLLVM 120 + + +I LL+ ILMMIALYS+NLRI+ KPNV L+ E ++FT + P + Sbjct: 70 AAAGLVTGWLNVRLRIMDLLASILMMIALYSVNLRIMGKPNVPLITEPTVFTLLQPQWLS 129 Query: 121 PFV---------MIAVKIXXXXXXXXXXXXXXXATGDNARMIRSFGVNTDTTTILGISLS 171 +V +I VK+ +TG N RM R+ GVNT + G++LS Sbjct: 130 DYVARPLILLVVVIIVKLALDWFLATQAGLAMRSTGSNGRMARAQGVNTGAMILAGMALS 189 Query: 172 NGMVALSGALIAQYSSFADSTMGIGMIVIGLASVIIGEAIFGAGNVFRATLAVVLGSIVY 231 N +VAL+GAL AQ AD +MGIG IVIGLA+VI+GE+I + + ATLAV+LG+IVY Sbjct: 190 NALVALAGALFAQTQGGADISMGIGTIVIGLAAVIVGESILPSRRLVMATLAVILGAIVY 249 Query: 232 RIVVALALRVPW--LQASDLKXXXXXXXXXXXXFPSIQR 268 R +ALAL + L+A DL P ++R Sbjct: 250 RFFIALALNSDFIGLKAQDLNLVTAVLVTIALVIPMLKR 288 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.327 0.140 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 302,781,112 Number of extensions: 9675136 Number of successful extensions: 46611 Number of sequences better than 1.0e-05: 52 Number of HSP's gapped: 46503 Number of HSP's successfully gapped: 53 Length of query: 299 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 174 Effective length of database: 417,850,203 Effective search space: 72705935322 Effective search space used: 72705935322 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 125 (52.8 bits)