BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0017.p (264 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_738754.1| putative ABC transporter ATP-binding protein [C... 327 1e-88 ref|NP_601448.1| ABC-type transporter, ATPase component [Coryneb... 309 5e-83 emb|CAF20590.1| ABC TRANSPORTER ATP-BINDING PROTEIN [Corynebacte... 307 1e-82 ref|ZP_00099485.1| COG1101: ABC-type uncharacterized transport s... 299 4e-80 ref|ZP_00145507.1| hypothetical protein Psyc200901 [Psychrobacte... 279 4e-74 >ref|NP_738754.1| putative ABC transporter ATP-binding protein [Corynebacterium efficiens YS-314] dbj|BAC18954.1| putative ABC transporter ATP-binding protein [Corynebacterium efficiens YS-314] Length = 267 Score = 327 bits (839), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 165/262 (62%), Positives = 206/262 (78%) Query: 1 MLKLDHVSKLFNPGTPDEKIALLGIDLELRAGDFVTVIGSNGAGKSTLMNVISGVMKPDL 60 ML L ++SK F PGT +E+ AL + LE++ GDFVTVIGSNGAGKST++N ISG + D Sbjct: 5 MLTLSNISKTFFPGTVNERRALSDLSLEMKEGDFVTVIGSNGAGKSTMLNAISGRLLMDS 64 Query: 61 GEVRIEGTSISGQSEFQRARWIGRVFQDPMAGTAPHMTIEENLAMAYKRGQSRGLSFGVS 120 G + I+GT ++ +E +RAR+IGRVFQDP+AGTAP++TIEENL++A RG+ RGL +S Sbjct: 65 GTITIDGTQVNRMTEHKRARFIGRVFQDPLAGTAPNLTIEENLSLALLRGRKRGLGMALS 124 Query: 121 AARRTLFREQLSRLGIGLENRLRAKVGLLSGGERQALSLLMATFTQPQILLLDEHTAALD 180 RR L+R++L+RL +GLENRL AKVGLLSGG+RQALSLLMA +TQP+I+LLDEHTAALD Sbjct: 125 TKRRELYRQELARLELGLENRLTAKVGLLSGGQRQALSLLMAGYTQPKIMLLDEHTAALD 184 Query: 181 PARAELITRLTESIVRELKLTTLMVTHNMEQAIRLGNRLIMMDKGSIILDIDEDRKQDLT 240 P RAEL+T LTE IV + KLTTLMVTHNMEQAIRLGNRLIMM +G I+ + + KQ LT Sbjct: 185 PQRAELVTTLTEKIVEDGKLTTLMVTHNMEQAIRLGNRLIMMHEGRIVYEASAEVKQKLT 244 Query: 241 VERLLGEFEGISGHKLADDRMM 262 V LL EF I G L+D M+ Sbjct: 245 VRDLLQEFAKIKGATLSDKAML 266 >ref|NP_601448.1| ABC-type transporter, ATPase component [Corynebacterium glutamicum ATCC 13032] dbj|BAB99642.1| ABC-type transporter, ATPase component [Corynebacterium glutamicum ATCC 13032] Length = 263 Score = 309 bits (791), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 163/258 (63%), Positives = 201/258 (77%) Query: 1 MLKLDHVSKLFNPGTPDEKIALLGIDLELRAGDFVTVIGSNGAGKSTLMNVISGVMKPDL 60 ML ++ +SK F PGT +E+ AL + L++ GDFVTVIGSNGAGKSTL+N +SG + D Sbjct: 1 MLSINGISKTFFPGTVNERRALQQLKLDMAEGDFVTVIGSNGAGKSTLLNAVSGRLLVDS 60 Query: 61 GEVRIEGTSISGQSEFQRARWIGRVFQDPMAGTAPHMTIEENLAMAYKRGQSRGLSFGVS 120 GE+ I+G ++ SE +RAR+IGRVFQDP+AGTAP++TIEENLA+A RG+ RGL F ++ Sbjct: 61 GEISIDGNKVNKMSEHKRARYIGRVFQDPLAGTAPNLTIEENLAIALLRGKRRGLGFALT 120 Query: 121 AARRTLFREQLSRLGIGLENRLRAKVGLLSGGERQALSLLMATFTQPQILLLDEHTAALD 180 + RR F+++L RL +GLENRL AKVGLLSGG+RQALSLLMA FTQP+I+LLDEHTAALD Sbjct: 121 SKRREQFKQELERLELGLENRLTAKVGLLSGGQRQALSLLMAGFTQPKIMLLDEHTAALD 180 Query: 181 PARAELITRLTESIVRELKLTTLMVTHNMEQAIRLGNRLIMMDKGSIILDIDEDRKQDLT 240 P RAEL+T LTE IV + LTTLMVTHNMEQAIRLGNRLIMM +G I+ D+ K LT Sbjct: 181 PQRAELVTTLTEKIVADGNLTTLMVTHNMEQAIRLGNRLIMMHEGQIVYQADQATKSKLT 240 Query: 241 VERLLGEFEGISGHKLAD 258 V LL EF I G L+D Sbjct: 241 VRDLLQEFANIKGATLSD 258 >emb|CAF20590.1| ABC TRANSPORTER ATP-BINDING PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 263 Score = 307 bits (787), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 162/258 (62%), Positives = 201/258 (77%) Query: 1 MLKLDHVSKLFNPGTPDEKIALLGIDLELRAGDFVTVIGSNGAGKSTLMNVISGVMKPDL 60 ML ++ +SK F PGT +E+ AL + L++ GDFVTVIGSNGAGKSTL+N +SG + D Sbjct: 1 MLSINGISKTFFPGTVNERRALQQLKLDMAEGDFVTVIGSNGAGKSTLLNAVSGRLLVDS 60 Query: 61 GEVRIEGTSISGQSEFQRARWIGRVFQDPMAGTAPHMTIEENLAMAYKRGQSRGLSFGVS 120 GE+ I+G ++ SE +RAR+IGRVFQDP+AGTAP++TIEENLA+A RG+ RGL F ++ Sbjct: 61 GEISIDGNKVNKMSEHKRARYIGRVFQDPLAGTAPNLTIEENLAIALLRGKRRGLGFALT 120 Query: 121 AARRTLFREQLSRLGIGLENRLRAKVGLLSGGERQALSLLMATFTQPQILLLDEHTAALD 180 + RR F+++L RL +GLENRL AKVGLLSGG+RQALSLLMA FTQP+I+LLDEHTAALD Sbjct: 121 SKRREQFKQELERLELGLENRLTAKVGLLSGGQRQALSLLMAGFTQPKIMLLDEHTAALD 180 Query: 181 PARAELITRLTESIVRELKLTTLMVTHNMEQAIRLGNRLIMMDKGSIILDIDEDRKQDLT 240 P RAEL+T LTE IV + LTTLMVTHNMEQAIRLGNR+IMM +G I+ D+ K LT Sbjct: 181 PQRAELVTTLTEKIVADGNLTTLMVTHNMEQAIRLGNRVIMMHEGQIVYQADQATKSKLT 240 Query: 241 VERLLGEFEGISGHKLAD 258 V LL EF I G L+D Sbjct: 241 VRDLLQEFANIKGATLSD 258 >ref|ZP_00099485.1| COG1101: ABC-type uncharacterized transport system, ATPase component [Desulfitobacterium hafniense] Length = 267 Score = 299 bits (765), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 151/264 (57%), Positives = 196/264 (74%) Query: 1 MLKLDHVSKLFNPGTPDEKIALLGIDLELRAGDFVTVIGSNGAGKSTLMNVISGVMKPDL 60 ML + +++K+FN GT +EK AL + LEL GDFVTVIGSNGAGKS+LMN I+GV PD Sbjct: 1 MLTVQNLTKVFNKGTINEKKALDSLSLELAPGDFVTVIGSNGAGKSSLMNAIAGVFIPDN 60 Query: 61 GEVRIEGTSISGQSEFQRARWIGRVFQDPMAGTAPHMTIEENLAMAYKRGQSRGLSFGVS 120 GE+ I+GT I+ + ++R+ I RVFQDP++GTA MTIEENL MA +RG+SR L + ++ Sbjct: 61 GEISIDGTPITKWASYKRSGLISRVFQDPLSGTAASMTIEENLVMALRRGESRRLRWALN 120 Query: 121 AARRTLFREQLSRLGIGLENRLRAKVGLLSGGERQALSLLMATFTQPQILLLDEHTAALD 180 +R FR +LS+LG+GLE RL KV LLSGG+RQAL+LLMAT P++LLLDEHTAALD Sbjct: 121 VNKRDYFRNELSKLGLGLEGRLTTKVKLLSGGQRQALTLLMATLQNPKLLLLDEHTAALD 180 Query: 181 PARAELITRLTESIVRELKLTTLMVTHNMEQAIRLGNRLIMMDKGSIILDIDEDRKQDLT 240 P AE + LT + + KLTTLM+THN+EQA+ +GNR IMM +G IILDI +Q++T Sbjct: 181 PKTAEKVMELTCKVAQSSKLTTLMITHNLEQALAVGNRTIMMHEGRIILDIRGVERQNMT 240 Query: 241 VERLLGEFEGISGHKLADDRMMLG 264 + RLL FE SG + +DRMML Sbjct: 241 IGRLLDMFEKASGVHMNNDRMMLA 264 >ref|ZP_00145507.1| hypothetical protein Psyc200901 [Psychrobacter sp. 273-4] Length = 264 Score = 279 bits (714), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 134/253 (52%), Positives = 184/253 (72%) Query: 11 FNPGTPDEKIALLGIDLELRAGDFVTVIGSNGAGKSTLMNVISGVMKPDLGEVRIEGTSI 70 FNPGTP E AL GI+L + G+FVTVIG+NGAGKST +N +SG + D G + + G + Sbjct: 11 FNPGTPIENPALRGINLNIADGEFVTVIGTNGAGKSTFLNAVSGTTRVDSGSILLNGIDV 70 Query: 71 SGQSEFQRARWIGRVFQDPMAGTAPHMTIEENLAMAYKRGQSRGLSFGVSAARRTLFREQ 130 + ++ QRA W+ RVFQDPMAGT +TIEEN+A+AYKRG RGL+F ++ R LF+E+ Sbjct: 71 TKKTAHQRAHWVARVFQDPMAGTCEALTIEENMALAYKRGGKRGLNFALNPNNRDLFKEK 130 Query: 131 LSRLGIGLENRLRAKVGLLSGGERQALSLLMATFTQPQILLLDEHTAALDPARAELITRL 190 LS L +GLE+RL ++GLLSGG+RQA+SLLMA+ +ILLLDEHTAALDP A + L Sbjct: 131 LSVLKLGLESRLTDRMGLLSGGQRQAVSLLMASLQPSKILLLDEHTAALDPKTAAFVLEL 190 Query: 191 TESIVRELKLTTLMVTHNMEQAIRLGNRLIMMDKGSIILDIDEDRKQDLTVERLLGEFEG 250 T+ IV + +LTT+MVTH+M+QA+ G R +M+ +G ++LD+ D++Q +TV LL FE Sbjct: 191 TDKIVTDNQLTTMMVTHSMQQALAHGTRTVMLHQGQVVLDVAGDKRQGMTVHDLLDMFEQ 250 Query: 251 ISGHKLADDRMML 263 G K+ DD ++L Sbjct: 251 TRGEKVDDDSLIL 263 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.137 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 351,903,838 Number of extensions: 13240131 Number of successful extensions: 105313 Number of sequences better than 1.0e-05: 18346 Number of HSP's gapped: 85741 Number of HSP's successfully gapped: 19450 Length of query: 264 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 141 Effective length of database: 423,280,401 Effective search space: 59682536541 Effective search space used: 59682536541 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)