BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0012.p (317 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_388579.1| similar to lactose permease [Bacillus subtilis]... 402 e-111 ref|NP_241984.1| lactose transport system (permease) [Bacillus h... 328 1e-88 gb|AAQ87070.1| Oligogalacturonate transport system permease prot... 316 4e-85 ref|NP_384222.1| PUTATIVE TRANSPORT SYSTEM PERMEASE ABC TRANSPOR... 311 1e-83 ref|ZP_00035411.1| COG1175: ABC-type sugar transport systems, pe... 301 1e-80 >ref|NP_388579.1| similar to lactose permease [Bacillus subtilis] sp|O31519|YESP_BACSU Probable ABC transporter permease protein yesP pir||G69796 lactose permease homolog yesP - Bacillus subtilis emb|CAB12517.1| yesP [Bacillus subtilis subsp. subtilis str. 168] Length = 309 Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust. Identities = 202/298 (67%), Positives = 241/298 (80%), Gaps = 2/298 (0%) Query: 17 KKPLGQRLRKNLTGYAFISPFIIGFLCFTLVPMAISLYLSFTKYNLFAPPRWIGFDNYIK 76 KK R + NL GYAFISPFIIGFLCFT++PM SL+LSFT Y+LF P+WIG DN+ + Sbjct: 10 KKSRSIR-KDNLAGYAFISPFIIGFLCFTVIPMGASLFLSFTSYDLFTAPKWIGLDNFKE 68 Query: 77 MFTGDPKYVHSLKVTLLYVFIGVPLRLGFALFVAMILNTRSRMVGAYRTVYYLPSIIGGS 136 MFTGD KY SLKVT YV GVPLRLGFALF+A+ILN ++ YRT++YLPSIIGGS Sbjct: 69 MFTGDEKYWQSLKVTFTYVLAGVPLRLGFALFIAVILNNAAKGTAIYRTLFYLPSIIGGS 128 Query: 137 VAVSIMWRNIFSDTGIINGMLGFFGLGP-VSWFGNPNAALFMLITLSVWQFGSSMLIFLA 195 VAV+IMWRNIF + G+IN +L F G+ + W+ NP +AL+ LI LSVWQFGSSMLIFLA Sbjct: 129 VAVAIMWRNIFGNDGVINALLFFVGIDQKILWYQNPTSALWTLILLSVWQFGSSMLIFLA 188 Query: 196 GLKNISGEMYEAASVDGASFFRKFFKITLPLLSSVILFNMVMQTISAFMTFVPAYIISKG 255 GLKNI EAASVDGA+ ++FFKITLP+L+ +I FN+VMQTISAFMTF PAYIISKG Sbjct: 189 GLKNIPSSYLEAASVDGANRVQRFFKITLPILTPIIFFNLVMQTISAFMTFTPAYIISKG 248 Query: 256 EGGPMDGTMLYSLYLFRQAFMFNNMGYASAMAWVMLLLVGIMTGILFKTSKSWVFYES 313 EGGP+DGT+LYSLYLF++AF + MGYASAMAWVML++VG++T ILFKTS WV YES Sbjct: 249 EGGPLDGTLLYSLYLFQRAFNYFQMGYASAMAWVMLVIVGLITLILFKTSSYWVHYES 306 >ref|NP_241984.1| lactose transport system (permease) [Bacillus halodurans] pir||F83789 lactose transport system (permease) BH1118 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04837.1| lactose transport system (permease) [Bacillus halodurans] Length = 318 Score = 328 bits (840), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 161/319 (50%), Positives = 223/319 (69%), Gaps = 6/319 (1%) Query: 3 LSNPLPVNPRALRAKKPLGQRLRK----NLTGYAFISPFIIGFLCFTLVPMAISLYLSFT 58 + + VN A+ ++ RK + GYA ISP+++GF + PM SLY SFT Sbjct: 1 MRDAAKVNREAIELYDSKTRQERKKWKESFVGYAMISPWLLGFFGLVIGPMIASLYFSFT 60 Query: 59 KYNLFAPPRWIGFDNYIKMFTGDPKYVHSLKVTLLYVFIGVPLRLGFALFVAMILNTRSR 118 Y++ + W+G NYI +FT DP++V SLKVTL++VF+ PL+L FALF+AM+ NT + Sbjct: 61 DYDMLSSANWVGLQNYIHIFTSDPRFVQSLKVTLIFVFVPTPLKLAFALFLAMLFNTGRK 120 Query: 119 MVGAYRTVYYLPSIIGGSVAVSIMWRNIFSDTGIINGMLGFFGLGPVSWFGNPNAALFML 178 G + T+YY+PSIIGGSVAV+++W+ +F G +N L FG V+W G+ + AL +L Sbjct: 121 GSGLFSTIYYIPSIIGGSVAVAVVWKQLFGSRGAVNSFLELFGFSGVNWIGSTDYALSIL 180 Query: 179 ITLSVWQFGSSMLIFLAGLKNISGEMYEAASVDGASFFRKFFKITLPLLSSVILFNMVMQ 238 I L VWQFGS M+IFLAGL+ I E+YEAASVDGA+ FRKFF ITLP+L+ VI FN++MQ Sbjct: 181 ILLVVWQFGSPMIIFLAGLRQIPQELYEAASVDGANSFRKFFSITLPMLTPVIFFNLIMQ 240 Query: 239 TISAFMTFVPAYIISKGEGGPMDGTMLYSLYLFRQAFMFNNMGYASAMAWVMLLLVGIMT 298 TI FMTF AY+I+ GGP+D T+ Y++YL+ AF + MGYASAMAW++L+++G +T Sbjct: 241 TIGGFMTFTQAYLITG--GGPLDSTLFYAVYLYEVAFEYLRMGYASAMAWILLVIIGGIT 298 Query: 299 GILFKTSKSWVFYESGGGK 317 + FK+S WV YES GG+ Sbjct: 299 FVFFKSSSYWVHYESEGGR 317 >gb|AAQ87070.1| Oligogalacturonate transport system permease protein OgtA [Rhizobium sp. NGR234] Length = 318 Score = 316 bits (810), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 149/288 (51%), Positives = 212/288 (73%) Query: 26 KNLTGYAFISPFIIGFLCFTLVPMAISLYLSFTKYNLFAPPRWIGFDNYIKMFTGDPKYV 85 K+ GY F+ P+++GF TL P SLYLSFT ++L P W+G NY+++ T DPK+ Sbjct: 31 KHGAGYMFLLPWLVGFFGLTLGPAVASLYLSFTSFDLIRSPEWVGTANYVRIATADPKFA 90 Query: 86 HSLKVTLLYVFIGVPLRLGFALFVAMILNTRSRMVGAYRTVYYLPSIIGGSVAVSIMWRN 145 SLKVT LYV + VP +L FALFVA++L+ + + YR ++YLPS++GGSVA++++WR Sbjct: 91 ASLKVTFLYVVLSVPFKLAFALFVAILLDRGVKGLTVYRAIFYLPSLLGGSVAIAVLWRQ 150 Query: 146 IFSDTGIINGMLGFFGLGPVSWFGNPNAALFMLITLSVWQFGSSMLIFLAGLKNISGEMY 205 +F+ G+IN +L FG+ SW +P+ +++ L+ LSVWQFGS M+IFLAGL+ I +MY Sbjct: 151 LFAGDGLINSLLAQFGIEGPSWISHPDYSIWTLVVLSVWQFGSPMIIFLAGLRQIPTDMY 210 Query: 206 EAASVDGASFFRKFFKITLPLLSSVILFNMVMQTISAFMTFVPAYIISKGEGGPMDGTML 265 EAAS+DGAS FR+F+KITLPLL+ VI FN V+QTI AF F PA+IIS G GGP++ T+ Sbjct: 211 EAASLDGASKFRQFYKITLPLLTPVIFFNAVVQTIEAFKAFTPAFIISGGTGGPINSTLF 270 Query: 266 YSLYLFRQAFMFNNMGYASAMAWVMLLLVGIMTGILFKTSKSWVFYES 313 Y+LYL+++AF MGYASA+AW+++L++G+ T F TS+ WV Y+ Sbjct: 271 YTLYLYQEAFGNFRMGYASALAWILVLIIGLFTAFSFLTSRYWVHYDD 318 >ref|NP_384222.1| PUTATIVE TRANSPORT SYSTEM PERMEASE ABC TRANSPORTER PROTEIN [Sinorhizobium meliloti] emb|CAC41503.1| PUTATIVE TRANSPORT SYSTEM PERMEASE ABC TRANSPORTER PROTEIN [Sinorhizobium meliloti] Length = 315 Score = 311 bits (798), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 150/298 (50%), Positives = 213/298 (71%) Query: 16 AKKPLGQRLRKNLTGYAFISPFIIGFLCFTLVPMAISLYLSFTKYNLFAPPRWIGFDNYI 75 A+ L + + GY F+ P++IGF TL P SLYLSFT ++L P WIG NY Sbjct: 18 AQGRLARIWASHGAGYMFLLPWLIGFFGLTLGPAIASLYLSFTNFDLIRAPEWIGTANYA 77 Query: 76 KMFTGDPKYVHSLKVTLLYVFIGVPLRLGFALFVAMILNTRSRMVGAYRTVYYLPSIIGG 135 ++ T DPK+ ++KVT LYV + VP +L FAL VA++L+ R + YR ++YLPS++GG Sbjct: 78 RIATADPKFAAAVKVTFLYVVLSVPFKLAFALLVAILLDRGVRGLTVYRAIFYLPSLLGG 137 Query: 136 SVAVSIMWRNIFSDTGIINGMLGFFGLGPVSWFGNPNAALFMLITLSVWQFGSSMLIFLA 195 SVA++++WR +F+ G+IN +L FG+ SW +P+ +++ L+ LSVWQFGS M+IFLA Sbjct: 138 SVAIAVLWRQLFAGDGLINSLLAQFGIEGPSWISHPDYSIWTLVVLSVWQFGSPMIIFLA 197 Query: 196 GLKNISGEMYEAASVDGASFFRKFFKITLPLLSSVILFNMVMQTISAFMTFVPAYIISKG 255 GL+ I +MYEAAS+DGAS FR+F+KITLPLL+ VI FN V+QTI AF F PA+IIS G Sbjct: 198 GLRQIPTDMYEAASLDGASKFRQFYKITLPLLTPVIFFNAVVQTIDAFKAFTPAFIISGG 257 Query: 256 EGGPMDGTMLYSLYLFRQAFMFNNMGYASAMAWVMLLLVGIMTGILFKTSKSWVFYES 313 GGP++ T+ Y+LYL+++AF MGYASA+AW+++L++G+ T F TS+ WV Y+ Sbjct: 258 TGGPINSTLFYTLYLYQEAFGNFRMGYASALAWILVLIIGLFTAFSFLTSRYWVHYDD 315 >ref|ZP_00035411.1| COG1175: ABC-type sugar transport systems, permease components [Enterococcus faecium] Length = 295 Score = 301 bits (771), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 145/285 (50%), Positives = 210/285 (73%), Gaps = 3/285 (1%) Query: 25 RKNLTGYAFISPFIIGFLCFTLVPMAISLYLSFTKYNLFAPPRWIGFDNYIKMFTGDPKY 84 + N+ GY F SPFI+GFL T++PM +SLY SFT Y L P WIG DNYIKM + D ++ Sbjct: 12 QDNVVGYVFASPFILGFLLITVIPMILSLYYSFTDYRLGNPVSWIGLDNYIKMLS-DARF 70 Query: 85 VHSLKVTLLYVFIGVPLRLGFALFVAMILNTRSRMVGAYRTVYYLPSIIGGSVAVSIMWR 144 ++S++VT LYVF VP++L F L +A +L + +R++YY+PS+IGGS++++++WR Sbjct: 71 LNSIRVTFLYVFASVPVKLIFGLLIAYLLTRNIKGTTFFRSLYYVPSLIGGSISIALVWR 130 Query: 145 NIFSDTGIINGMLGFFGLGPVSWFGNPNAALFMLITLSVWQFGSSMLIFLAGLKNISGEM 204 +FS G++N L G +SWF + + L+ +S WQFGS+M+IF AG+K I G Sbjct: 131 ELFSKNGLVNIFLERLGAPALSWFSDQKLVMIPLVLMSAWQFGSAMIIFAAGIKEIPGSY 190 Query: 205 YEAASVDGASFFRKFFKITLPLLSSVILFNMVMQTISAFMTFVPAYIISKGEGGPMDGTM 264 YEAA +DGA+ ++ F+KITLPLLS +IL+N+VMQTI+AFMTF A+II+ +GGP D T Sbjct: 191 YEAAEIDGANKWQTFYKITLPLLSPIILYNLVMQTIAAFMTFTQAFIIT--QGGPNDATN 248 Query: 265 LYSLYLFRQAFMFNNMGYASAMAWVMLLLVGIMTGILFKTSKSWV 309 Y+LY++ QAF FN+MGYASA++W+MLL++G +T ++FK+SK WV Sbjct: 249 FYALYVYNQAFSFNSMGYASAISWIMLLIMGDVTFLIFKSSKKWV 293 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.330 0.144 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 487,837,075 Number of extensions: 20342528 Number of successful extensions: 71014 Number of sequences better than 1.0e-05: 1349 Number of HSP's gapped: 68860 Number of HSP's successfully gapped: 1355 Length of query: 317 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 192 Effective length of database: 417,850,203 Effective search space: 80227238976 Effective search space used: 80227238976 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 126 (53.1 bits)