BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0008.p (328 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_347334.1| Galactose mutarotase related enzyme [Clostridiu... 191 2e-47 ref|NP_389718.1| similar to hypothetical proteins from B. subtil... 167 3e-40 emb|CAE11279.1| YoxA protein [Bacillus amyloliquefaciens] 162 1e-38 ref|NP_696523.1| hypothetical protein with possible aldose-1-epi... 65 2e-09 ref|NP_696524.1| hypothetical protein in aldose epimerase family... 65 3e-09 >ref|NP_347334.1| Galactose mutarotase related enzyme [Clostridium acetobutylicum] pir||G96985 galactose mutarotase related enzyme [imported] - Clostridium acetobutylicum gb|AAK78674.1| Galactose mutarotase related enzyme [Clostridium acetobutylicum] Length = 340 Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 98/303 (32%), Positives = 159/303 (52%), Gaps = 5/303 (1%) Query: 7 EGLYEGEAAVWLKAGRYEAAILPRIGGNLICFRDTENGYRFLHEPGAE-EMEAFKANPGI 65 E ++ + AG YEA I+P +GGN++ +DT G L P + + E FK P + Sbjct: 11 EIIWSEHKCIRFAAGGYEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKNRPQV 70 Query: 66 HGIPVLFPPNRYEDGEFPWNGQTYRFPVNEEATGNHLHGFLHTAAWEVVEFGSSVTESFV 125 +G+PVLFPPNR +DG F +TY+FP+NE N++HGF+ + W V + ++ V Sbjct: 71 YGLPVLFPPNRIDDGTFKLGDKTYKFPINEAKNNNYIHGFIKNSKWTVHKKKIDQDKALV 130 Query: 126 TVAVKVDENHPSYQYLPFKYTVKLRYSLGEAGLSQQLLVHNEGEELMPCLLAFHTAINAP 185 V + + +Y+Y ++ KL Y L GL Q V N E MP + +H+A N P Sbjct: 131 EVVFDFTKENEAYKYFSHEFQFKLSYELSSKGLKQTTSVVNLSSEEMPLSVGYHSAFNVP 190 Query: 186 FAPGSTAQDYRVKLTIGNRWELSDRMLPTGSFQELTADEIALRDEGLYPFYAPMDNHYTA 245 F GS + RVK++I W+ R LPTG T ++ + G+ P+++ ++ Sbjct: 191 FIEGSEDSNCRVKISIDKFWKQDSRNLPTGESFAPTGEQKEYLENGVAVASHPIESLFSL 250 Query: 246 A--AQNGRNRME--LTDSKAGVTLVYDVGTSYKQWMIWNNSATEGFFCPEPQINLVNAPK 301 NG+ + D+ +VY++ + YK +IWN+ + + C EPQ +++N+P Sbjct: 251 KDIDVNGKTFRGACIEDASKNTRVVYEMSSEYKYLVIWNDMGDKKYACIEPQTSIINSPN 310 Query: 302 VDL 304 V L Sbjct: 311 VKL 313 >ref|NP_389718.1| similar to hypothetical proteins from B. subtilis [Bacillus subtilis] sp|P39840|YOXA_BACSU Hypothetical protein yoxA pir||A69930 conserved hypothetical protein yoxA - Bacillus subtilis emb|CAB13719.1| yoxA [Bacillus subtilis subsp. subtilis str. 168] Length = 325 Score = 167 bits (423), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 98/295 (33%), Positives = 154/295 (52%), Gaps = 20/295 (6%) Query: 18 LKAG--RYEAAILPRIGGNLICFRDTENGYRFLHEPGAEEMEAFKANPGIHGIPVLFPPN 75 +KAG E ++P G N+I D + L EP E E+F P ++GIP+LFPPN Sbjct: 16 IKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREP--ETAESFHDTPTLYGIPILFPPN 73 Query: 76 RYEDGEFPWNGQTYRFPVNEEATGNHLHGFLHTAAWEVVEFGSSVTESFVTVAVKVDEN- 134 R DG F + G+TY F +NE+ NHLHGFL+ W VV + T+ V V ++D + Sbjct: 74 RISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVV--TTKQTDEGVIVETEIDLSE 131 Query: 135 --HPSYQYLPFKYTVKLRYSLGEAGLSQQLLVHNEGEELMPCLLAFHTAINAPFAPGSTA 192 H Q+ P V++ Y++ E L + V N+G+E P + +HT P A Sbjct: 132 LPHVQKQF-PHHAVVRMTYTIKENTLFKHATVMNKGKEAFPWGIGYHTTFIFP------A 184 Query: 193 QDYRVKLTIGNRWELSDRMLPTGSFQELTADEIALRDEGLYPFYAPMDNHYTAAAQN--G 250 + LT +WEL +R+LPTG ++ E AL EG+ + +D+ + ++ Q G Sbjct: 185 ESSLFSLTADQQWELDERLLPTGKLMDVPYKE-ALH-EGMDLRHKQLDDVFLSSYQKRGG 242 Query: 251 RNRMELTDSKAGVTLVYDVGTSYKQWMIWNNSATEGFFCPEPQINLVNAPKVDLP 305 N+ + A ++++Y +K W+++N +G+ CPEP + NA +DLP Sbjct: 243 ENQAVIYHQHAHISIIYKADEQFKHWVVYNADGKQGYLCPEPYTWVTNAVNLDLP 297 >emb|CAE11279.1| YoxA protein [Bacillus amyloliquefaciens] Length = 324 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 96/309 (31%), Positives = 158/309 (51%), Gaps = 17/309 (5%) Query: 1 MSITAYEGLYEGEAAVWLKAGRYEAAILPRIGGNLICFRDTENGYRFLHEPGAEEMEAFK 60 M +T Y G +A+ + + E I+P G N+I RD G R L EP E E F+ Sbjct: 1 MLMTIEHTTYLGVSAIKAETDQAECIIVPEWGSNVISLRDKRTGMRLLREP--ETAEQFR 58 Query: 61 ANPGIHGIPVLFPPNRYEDGEFPWNGQTYRFPVNEEATGNHLHGFLHTAAWEVV---EFG 117 A P ++GIPVLFPPNR DG F ++G+ Y+F +NEE NH+HGFLH W+ E G Sbjct: 59 AKPMLYGIPVLFPPNRITDGTFRFDGRAYQFEINEEDKHNHIHGFLHNQHWKAAAAKEEG 118 Query: 118 SSVTESFVTVAVKVDENHPSYQYLPFKYTVKLRYSLGEAGLSQQLLVHNEGEELMPCLLA 177 +T V + + + ++ P V++ Y+L + +Q+ L+ N+G E P L Sbjct: 119 DGMT---VETEIDLSKIPRVHKQFPHDVVVRMTYTLKDNVFTQRALIINKGTEAFPWGLG 175 Query: 178 FHTAINAPFAPGSTAQDYRVKLTIGNRWELSDRMLPTGSFQELTADEIALRDEGLYPFYA 237 +H+ + R+ LT WEL++R +PTG ++ D+ A R G+ Sbjct: 176 YHSTFVF------NEERSRLFLTADRMWELNERFVPTGRLLDV-PDKEAFR-HGMSLKNK 227 Query: 238 PMDNHYTAAAQN-GRNRMELTDSKAGVTLVYDVGTSYKQWMIWNNSATEGFFCPEPQINL 296 D+ + ++ +N G N + ++++Y TS+K W+++N +GF EP ++ Sbjct: 228 QFDDVFLSSGRNGGNNEAVIYHPDEQLSVLYQADTSFKHWVVYNGDGKQGFVSLEPYTSV 287 Query: 297 VNAPKVDLP 305 +A ++ P Sbjct: 288 TDAFNLNQP 296 >ref|NP_696523.1| hypothetical protein with possible aldose-1-epimerase domain [Bifidobacterium longum NCC2705] gb|AAN25159.1| hypothetical protein with possible aldose-1-epimerase domain [Bifidobacterium longum NCC2705] Length = 314 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 16/166 (9%) Query: 70 VLFP-PNRYEDGEFPWNGQTYRFPVNEEATGNHLHGFLHTAAWEVVEFGSSVTESFVTVA 128 VL P PNR +G++ ++G+ Y+ P++E + LHG+ + WE+V+ ES VT++ Sbjct: 56 VLAPYPNRVTNGQYSFDGEDYQMPIDEFDRQSSLHGYAYRYMWELVDL----QESHVTLS 111 Query: 129 VKVDENHPSYQYLPFKYTVKLRYSLGEAGLSQQLLVHNEGEELMPCLLAFHTAI-NAPFA 187 + P PF T+ Y+L E GL++ VHN P H + N A Sbjct: 112 WR----SPDIAGYPFDITITATYALDENGLTETFTVHNNDSVKAPWAFGIHPWLANGKHA 167 Query: 188 PGS--TAQD--YRVKLTIGNRWELSDRMLPTGSFQELTADEIALRD 229 G TA + R++L + + +LPTG +E + LRD Sbjct: 168 TGQAITADNEPCRLELHCDTHVTVDEHLLPTG--EEPVSGIFDLRD 211 >ref|NP_696524.1| hypothetical protein in aldose epimerase family [Bifidobacterium longum NCC2705] gb|AAN25160.1| hypothetical protein in aldose epimerase family [Bifidobacterium longum NCC2705] Length = 318 Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 20/158 (12%) Query: 70 VLFP-PNRYEDGEFPWNGQTYRFPVNE---EATGNHLHGFLHTAAWEVVEFGSSVTESFV 125 VL P PNR E+GE+ +NG+ Y PVNE N HG+ + W++ S+T+S V Sbjct: 57 VLAPWPNRIENGEYDFNGKHYCAPVNEYHPAPRNNANHGYAYHYMWKL----ESLTDSAV 112 Query: 126 TVAVKVDENHPSYQYLPFKYTVKLRYSLGEAGLSQQLLVHNEGEELMPCLLAFHTAINAP 185 T++++ P+ PF TV + Y LG+ G++ + N+G+E P L H + A Sbjct: 113 TLSLRF----PNLDGYPFDVTVTVTYELGDNGMTATVNARNDGDEPAPWALGLHPWL-AN 167 Query: 186 FAPGSTAQD-------YRVKLTIGNRWELSDRMLPTGS 216 G+TA + +++ + +++ ++PTG+ Sbjct: 168 GKQGATAAERDADSAACHLQIKAASHVTVNEALIPTGT 205 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 513,438,103 Number of extensions: 22853724 Number of successful extensions: 41163 Number of sequences better than 1.0e-05: 18 Number of HSP's gapped: 41166 Number of HSP's successfully gapped: 18 Length of query: 328 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 202 Effective length of database: 415,135,104 Effective search space: 83857291008 Effective search space used: 83857291008 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)