BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0487.0004.p (150 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00138906.1| COG1846: Transcriptional regulators [Pseudomo... 104 5e-22 ref|NP_357408.1| AGR_L_3233p [Agrobacterium tumefaciens] >gi|179... 96 4e-19 ref|NP_698563.1| transcriptional regulator, MarR family [Brucell... 91 6e-18 ref|ZP_00103322.1| COG1846: Transcriptional regulators [Desulfit... 87 9e-17 ref|NP_249976.1| probable transcriptional regulator [Pseudomonas... 87 2e-16 >ref|ZP_00138906.1| COG1846: Transcriptional regulators [Pseudomonas aeruginosa UCBPP-PA14] Length = 137 Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 58/132 (43%), Positives = 77/132 (58%) Query: 19 CTCINLRRSSMAVTALYDRYLTPSGLNISQFSLLKHLTVLGPVSVSELALEMRLDRTTIV 78 C C LRR++ +V+ YD L +GL ++QFSLL+HL L S+SELA M LDR+T+ Sbjct: 6 CLCTKLRRAARSVSRFYDEALADTGLKVAQFSLLRHLQRLDRPSISELAEAMGLDRSTLG 65 Query: 79 RNLKALEQCGYVQDTSVAGSRNRCLTLTESGRAAYNDAAELWEEAQRFLQASLGEEDLQM 138 RNL+ LE G ++ T RNR + LT +G A WE+AQR L LGEE Sbjct: 66 RNLRVLEGDGLLRLTGGEDQRNRLVELTPAGLDALERGTPAWEDAQRRLAGRLGEERSGA 125 Query: 139 LTTLLFKIENLS 150 L LL ++E L Sbjct: 126 LAALLVELERLD 137 >ref|NP_357408.1| AGR_L_3233p [Agrobacterium tumefaciens] ref|NP_533693.1| transcriptional regulator, MarR family [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||G98333 probable transcription regulator PA1285 [imported] - Agrobacterium tumefaciens (strain C58, Cereon) pir||AC2949 transcription regulator, MarR family Atu3193 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAK90193.1| AGR_L_3233p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL44009.1| transcriptional regulator, MarR family [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 133 Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 51/125 (40%), Positives = 72/125 (57%) Query: 19 CTCINLRRSSMAVTALYDRYLTPSGLNISQFSLLKHLTVLGPVSVSELALEMRLDRTTIV 78 C CI LR++S V++ YD L P G+NI QFSLL+++ PVS+++LA + LDR+T+ Sbjct: 6 CHCILLRKASRKVSSYYDEALAPLGVNIGQFSLLRNINRTAPVSLTDLAARVELDRSTVG 65 Query: 79 RNLKALEQCGYVQDTSVAGSRNRCLTLTESGRAAYNDAAELWEEAQRFLQASLGEEDLQM 138 RN + L + G V R LT+TE G+A A LW+ Q ++A LG E Sbjct: 66 RNARVLARMGLVAIGHGEDQREAMLTVTEEGQAILKAGAPLWDGVQDEIEARLGPEKTAQ 125 Query: 139 LTTLL 143 L LL Sbjct: 126 LQELL 130 >ref|NP_698563.1| transcriptional regulator, MarR family [Brucella suis 1330] gb|AAN30478.1| transcriptional regulator, MarR family [Brucella suis 1330] Length = 136 Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 76/131 (58%) Query: 17 SACTCINLRRSSMAVTALYDRYLTPSGLNISQFSLLKHLTVLGPVSVSELALEMRLDRTT 76 + C CI LR+++ ++ +YD L P G+N++QFS L+ + G +S+SELA LDR+T Sbjct: 3 TPCFCIYLRQAARKISNIYDEALAPLGINVAQFSTLRKIRRAGSISLSELARLSELDRST 62 Query: 77 IVRNLKALEQCGYVQDTSVAGSRNRCLTLTESGRAAYNDAAELWEEAQRFLQASLGEEDL 136 + RN K L++ G ++ + R LTLT GR A LW AQ+ ++ LG + Sbjct: 63 MGRNTKVLQRVGLIEHVASDDHRETNLTLTTEGRNLAERGAPLWNRAQKEIETRLGGDGA 122 Query: 137 QMLTTLLFKIE 147 + L LL +++ Sbjct: 123 EQLLALLRRLD 133 >ref|ZP_00103322.1| COG1846: Transcriptional regulators [Desulfitobacterium hafniense] Length = 154 Score = 87.4 bits (215), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 76/136 (55%), Gaps = 3/136 (2%) Query: 10 PALKPAVSACTCINLRRSSMAVTALYDRYLTPSGLNISQFSLLKHLTVLGPVSVSELALE 69 PA P+V CTC +R+ S ++ YD+ L P+G+N++Q+S+L+ G + E+A E Sbjct: 12 PAQPPSV--CTCFRMRKLSRLMSQRYDQALAPAGVNLNQYSILRRTGGRG-RPLGEIAHE 68 Query: 70 MRLDRTTIVRNLKALEQCGYVQDTSVAGSRNRCLTLTESGRAAYNDAAELWEEAQRFLQA 129 + +DR+T+ R+LK L G+V+ +R R L +T +GRA A LW AQ + Sbjct: 69 LGMDRSTLSRDLKPLSAAGWVESAPGEDARQRLLRITAAGRAVVERAMPLWRRAQDEIDQ 128 Query: 130 SLGEEDLQMLTTLLFK 145 LG + + L L + Sbjct: 129 GLGADGIAALHAQLDR 144 >ref|NP_249976.1| probable transcriptional regulator [Pseudomonas aeruginosa PA01] pir||E83484 probable transcription regulator PA1285 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG04674.1| probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Length = 149 Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/116 (45%), Positives = 70/116 (60%) Query: 19 CTCINLRRSSMAVTALYDRYLTPSGLNISQFSLLKHLTVLGPVSVSELALEMRLDRTTIV 78 C C LRR++ +V+ YD L +GL ++QFSLL+HL L S+SELA M LDR+T+ Sbjct: 18 CLCTKLRRAARSVSRFYDEALADTGLKVAQFSLLRHLRRLDRPSISELAEAMGLDRSTLG 77 Query: 79 RNLKALEQCGYVQDTSVAGSRNRCLTLTESGRAAYNDAAELWEEAQRFLQASLGEE 134 RNL+ LE G ++ T RNR + LT +G A WE+AQR L LGEE Sbjct: 78 RNLRVLEGDGLLRLTGGEDQRNRLVELTPAGLDALERGTPAWEDAQRRLAGRLGEE 133 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.128 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 185,376,880 Number of extensions: 5766048 Number of successful extensions: 16043 Number of sequences better than 1.0e-05: 35 Number of HSP's gapped: 16112 Number of HSP's successfully gapped: 35 Length of query: 150 Length of database: 757,237,578 Length adjustment: 109 Effective length of query: 41 Effective length of database: 461,291,787 Effective search space: 18912963267 Effective search space used: 18912963267 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)