BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0487.0003.p (387 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAD45714.1| L-arabinose membrane permease [Geobacillus stearo... 425 e-117 ref|NP_244307.1| L-arabinose ABC transporter (permease) [Bacillu... 413 e-114 ref|NP_355304.1| AGR_C_4262p [Agrobacterium tumefaciens] >gi|179... 353 4e-96 ref|NP_769850.1| sugar ABC transporter permease protein [Bradyrh... 352 6e-96 ref|NP_700102.1| sugar ABC transporter, permease protein [Brucel... 345 1e-93 >gb|AAD45714.1| L-arabinose membrane permease [Geobacillus stearothermophilus] Length = 407 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 219/385 (56%), Positives = 264/385 (68%) Query: 3 AISEIFKKNIRQYGMIIALIFISVFFQILTDGILLKPLNVTNLILQNSYILVLAIGMVLV 62 ++ ++ K N+R Y M+IALI I + FQ+LT GILL+PLN+TNLILQNSYILVLA+GM+LV Sbjct: 23 SLKQMIKNNMRSYSMVIALILIMLLFQVLTGGILLRPLNITNLILQNSYILVLAVGMMLV 82 Query: 63 IITGHIDLSVGSVAAFIGALSAIMMVDMQMNPVLAVILSLLMGALVGAWQGFWVAYIKIP 122 IITGHIDLSVGSVAAF+GAL+ I+MV + L V++ LL+GAL+GAWQGFWVAY+KIP Sbjct: 83 IITGHIDLSVGSVAAFVGALAGILMVQHHASVWLTVLICLLLGALIGAWQGFWVAYVKIP 142 Query: 123 AFIVTLAGMLLFRGLTMIVLNGQSIAPFPKSFQKISSGFIPDLSGGSSLNXXXXXXXXXX 182 +FIVTLAGMLLFRGLTM++L GQSIAPFPK+FQ +SSGF+PD+ G ++ Sbjct: 143 SFIVTLAGMLLFRGLTMVILEGQSIAPFPKTFQNMSSGFLPDVFHGGEIHLFTIVIGFAA 202 Query: 183 XXXXXYQEFRNRKISVKYGFEQSSVWLSVAKAAALVIVINLFTMVLAQYNGIPNXXXXXX 242 E+R R KYGF + + K A + VI +FT +LA Y IP Sbjct: 203 SLLFVVLEWRKRNSQKKYGFAVTPAAMFALKLAVIAAVIMIFTYILATYERIPTILVILV 262 Query: 243 XXXXXYSFVMNHMTMGRHIYALGGNEKAASLSGVKTKRVTFWVFVNMGVLAALSGLVFAA 302 YSFV N +GRHIYA+GGNEKAA LSG+KTKRVTFWVFVNMGVLAALSGL+FAA Sbjct: 263 ALIIAYSFVANRTVVGRHIYAIGGNEKAAQLSGIKTKRVTFWVFVNMGVLAALSGLIFAA 322 Query: 303 RLNSATPKAGTNFELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLVGLGVD 362 RLN+ATPKAG FELD SL+GLG+D Sbjct: 323 RLNAATPKAGNLFELDAIAACFIGGASAYGGIGTISGAIIGGLVMGVMNNGMSLLGLGID 382 Query: 363 WQQGIKGLVLLLAVGFDIYNKSKTA 387 WQQ IKGLVLL+AV FDIYNK+K A Sbjct: 383 WQQAIKGLVLLIAVAFDIYNKNKAA 407 >ref|NP_244307.1| L-arabinose ABC transporter (permease) [Bacillus halodurans] pir||H84079 L-arabinose ABC transporter (permease) BH3440 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07159.1| L-arabinose ABC transporter (permease) [Bacillus halodurans] Length = 388 Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust. Identities = 210/384 (54%), Positives = 266/384 (69%), Gaps = 2/384 (0%) Query: 4 ISEIFKKNIRQYGMIIALIFISVFFQILTDGILLKPLNVTNLILQNSYILVLAIGMVLVI 63 ++E+ K N+R YGMI+AL+FI + F +L+DGILL+PLNVTNLILQNSYILVLAIGMV+VI Sbjct: 3 LAELLKNNMRSYGMIVALMFIILLFSVLSDGILLRPLNVTNLILQNSYILVLAIGMVMVI 62 Query: 64 ITGHIDLSVGSVAAFIGALSAIMMVDMQMNPVLAVILSLLMGALVGAWQGFWVAYIKIPA 123 I GHIDLSVGSV AF+GA++AI+M+DMQ+ LAV++ LL+GAL+GAW GF++AY+K+P+ Sbjct: 63 IAGHIDLSVGSVCAFVGAIAAILMIDMQLPTALAVLICLLLGALIGAWHGFFIAYLKMPS 122 Query: 124 FIVTLAGMLLFRGLTMIVLNGQSIAPFPKSFQKISSGFIPDLS--GGSSLNXXXXXXXXX 181 FIVTLAGMLLFRGLTM+VL GQS +P+P F ISSGF+PD+ G +S + Sbjct: 123 FIVTLAGMLLFRGLTMVVLGGQSKSPYPPEFILISSGFLPDIPFLGLASYHTLTMLIGVV 182 Query: 182 XXXXXXYQEFRNRKISVKYGFEQSSVWLSVAKAAALVIVINLFTMVLAQYNGIPNXXXXX 241 + E + R++ + F +AK +V +IN+FT VLA Y GIPN Sbjct: 183 LSLFVIFSELKERRVQINNQFMVLPKGFFIAKLIGMVAIINIFTFVLASYRGIPNILVIL 242 Query: 242 XXXXXXYSFVMNHMTMGRHIYALGGNEKAASLSGVKTKRVTFWVFVNMGVLAALSGLVFA 301 +SFVMN +GRHIYA GGN+KAA LSGVKTKRVTFWVFVNMG L+A++GL++A Sbjct: 243 FVLIVLFSFVMNKTVIGRHIYATGGNQKAAELSGVKTKRVTFWVFVNMGFLSAMAGLIYA 302 Query: 302 ARLNSATPKAGTNFELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLVGLGV 361 ARLNSATP+AGT FELD SL+G+ + Sbjct: 303 ARLNSATPRAGTMFELDAIAAAFIGGASMAGGVGTIVGAVVGGLVMGVMNNGMSLLGISI 362 Query: 362 DWQQGIKGLVLLLAVGFDIYNKSK 385 DWQQ IKGLVLL AVGFDIYN++K Sbjct: 363 DWQQAIKGLVLLAAVGFDIYNRNK 386 >ref|NP_355304.1| AGR_C_4262p [Agrobacterium tumefaciens] ref|NP_533019.1| ABC transporter, membrane spanning protein [sugar] [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||H97641 membrane-spanning permease (U91632) [imported] - Agrobacterium tumefaciens (strain C58, Cereon) pir||AI2864 hypothetical protein gguB [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAB51511.1| membrane-spanning permease [Agrobacterium tumefaciens] gb|AAK88089.1| AGR_C_4262p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL43335.1| ABC transporter, membrane spanning protein [sugar] [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 398 Score = 353 bits (906), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 179/383 (46%), Positives = 243/383 (63%) Query: 3 AISEIFKKNIRQYGMIIALIFISVFFQILTDGILLKPLNVTNLILQNSYILVLAIGMVLV 62 ++ + NIR+YGM+IAL+ I VFFQ T GIL +P+N+TNLILQNS+I+++A+GM+LV Sbjct: 15 SVGSYIRSNIREYGMLIALVAIMVFFQFYTGGILFRPVNLTNLILQNSFIVIMALGMLLV 74 Query: 63 IITGHIDLSVGSVAAFIGALSAIMMVDMQMNPVLAVILSLLMGALVGAWQGFWVAYIKIP 122 I+ GHIDLSVGS+ AF+GA++AI+ V MNP LA ++ L++G ++GA QG+W+AY +IP Sbjct: 75 IVAGHIDLSVGSIVAFVGAIAAILTVQWGMNPFLAALICLVIGGIIGAAQGYWIAYHRIP 134 Query: 123 AFIVTLAGMLLFRGLTMIVLNGQSIAPFPKSFQKISSGFIPDLSGGSSLNXXXXXXXXXX 182 +FIVTLAGML+FRGLT+ VL G++I PFP FQ IS+GF+PD+ G LN Sbjct: 135 SFIVTLAGMLVFRGLTLFVLGGKNIGPFPTDFQVISTGFLPDIGGIEGLNTTSMILTVLI 194 Query: 183 XXXXXYQEFRNRKISVKYGFEQSSVWLSVAKAAALVIVINLFTMVLAQYNGIPNXXXXXX 242 Y +R R ++VK+G + + + + I L+ Y G+PN Sbjct: 195 TVALFYLAWRRRVVNVKHGIDVEPFGFFIVQNLLISGAILFLGYQLSTYRGLPNVLIVML 254 Query: 243 XXXXXYSFVMNHMTMGRHIYALGGNEKAASLSGVKTKRVTFWVFVNMGVLAALSGLVFAA 302 YSFV T+GR +YA+GGNEKA LSG+ T+R++F FVNMGVLA L+G++ A Sbjct: 255 VLIALYSFVTRRTTIGRRVYAMGGNEKATKLSGINTERLSFLTFVNMGVLAGLAGMIIAT 314 Query: 303 RLNSATPKAGTNFELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLVGLGVD 362 RLNSATPKAG FELD S+VGLG+D Sbjct: 315 RLNSATPKAGVGFELDVIAACFIGGASASGGVGKITGAVIGAFIMGVMNNGMSIVGLGID 374 Query: 363 WQQGIKGLVLLLAVGFDIYNKSK 385 +QQ +KGLVLL AV FD+YNK+K Sbjct: 375 FQQMVKGLVLLAAVFFDVYNKNK 397 >ref|NP_769850.1| sugar ABC transporter permease protein [Bradyrhizobium japonicum] dbj|BAC48475.1| sugar ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 396 Score = 352 bits (904), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 183/378 (48%), Positives = 244/378 (64%), Gaps = 1/378 (0%) Query: 9 KKNIRQYGMIIALIFISVFFQILTDGILLKPLNVTNLILQNSYILVLAIGMVLVIITGHI 68 K N+R YGM+++LI I +FFQ++T G LL+PLN+TNL+LQNSYI+++A+GM+LVI+TGHI Sbjct: 19 KNNLRNYGMLMSLIAIMLFFQVMTGGTLLQPLNLTNLVLQNSYIVIMALGMLLVIVTGHI 78 Query: 69 DLSVGSVAAFIGALSAIMMVDMQMNPVLAVILSLLMGALVGAWQGFWVAYIKIPAFIVTL 128 DLSVGSVA F+GA++A++MV +++ LA I LL+GA +GA QG+WVAY KIP+FIVTL Sbjct: 79 DLSVGSVAGFVGAVAAVLMVTYKVDYTLAFIACLLLGAAIGAAQGYWVAYFKIPSFIVTL 138 Query: 129 AGMLLFRGLTMIVLNGQSIAPFPKSFQKISSGFIPD-LSGGSSLNXXXXXXXXXXXXXXX 187 AGML+F+GL + VL GQS+ PFP +FQK+SSGFIP+ L +L+ Sbjct: 139 AGMLVFKGLALAVLQGQSLGPFPATFQKLSSGFIPEILPEAGTLHPTSMLIGAVLALGLV 198 Query: 188 YQEFRNRKISVKYGFEQSSVWLSVAKAAALVIVINLFTMVLAQYNGIPNXXXXXXXXXXX 247 Y + R +G E + K+ L + FT ++A + G+PN Sbjct: 199 YVSAKGRSREQSHGIEVEPYAFFLGKSILLACAVLYFTYLIASHRGLPNVLVIMGALIAL 258 Query: 248 YSFVMNHMTMGRHIYALGGNEKAASLSGVKTKRVTFWVFVNMGVLAALSGLVFAARLNSA 307 Y FV +GR IYA+GGN KAASLSG+KT+R+TF FVNMGVLAAL+GLVFAARLN+A Sbjct: 259 YGFVTRRTVIGRQIYAVGGNAKAASLSGIKTERLTFLTFVNMGVLAALAGLVFAARLNTA 318 Query: 308 TPKAGTNFELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLVGLGVDWQQGI 367 TPKAG FELD S++G+G+D+QQ I Sbjct: 319 TPKAGLGFELDVIAACFIGGASAYGGVGRVGGAVVGAMIMGVMNNGMSILGIGIDYQQVI 378 Query: 368 KGLVLLLAVGFDIYNKSK 385 KGLVLL AV D+YN+ + Sbjct: 379 KGLVLLGAVCIDVYNQRR 396 >ref|NP_700102.1| sugar ABC transporter, permease protein [Brucella suis 1330] emb|CAC67778.1| putative sugar transport permease [Brucella melitensis biovar Suis] gb|AAN34107.1| sugar ABC transporter, permease protein [Brucella suis 1330] Length = 396 Score = 345 bits (885), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 178/384 (46%), Positives = 245/384 (63%), Gaps = 1/384 (0%) Query: 3 AISEIFKKNIRQYGMIIALIFISVFFQILTDGILLKPLNVTNLILQNSYILVLAIGMVLV 62 ++ K N+R+ GM+++L+ I +FFQI+T G+L+KPLN+TNL+LQNSYI+++A+GM+L+ Sbjct: 13 SVGRYLKNNLRESGMLLSLVAIMIFFQIVTGGVLMKPLNLTNLVLQNSYIVIMALGMLLI 72 Query: 63 IITGHIDLSVGSVAAFIGALSAIMMVDMQMNPVLAVILSLLMGALVGAWQGFWVAYIKIP 122 I+TGHIDLSVGSV FIGAL+A+MMV + + +A IL L++G L+GA QGFWVAY IP Sbjct: 73 IVTGHIDLSVGSVCGFIGALAAVMMVKLGIPFPIAAILCLIVGGLIGAIQGFWVAYFNIP 132 Query: 123 AFIVTLAGMLLFRGLTMIVLNGQSIAPFPKSFQKISSGFIPDLSGG-SSLNXXXXXXXXX 181 +FIVTLAGML+F+GL + VL GQS+ PFP FQK+SSGFIP++ G + Sbjct: 133 SFIVTLAGMLVFKGLMLAVLGGQSVGPFPVVFQKLSSGFIPEVIGTFDGVYLTSLIIGVL 192 Query: 182 XXXXXXYQEFRNRKISVKYGFEQSSVWLSVAKAAALVIVINLFTMVLAQYNGIPNXXXXX 241 +Q R+R + + E L V K + I +++++ + G+PN Sbjct: 193 LAVFLIWQSMRSRARHIAHEVETEPFGLFVVKCILYFVAIAYLSLLISSHRGMPNVLIIM 252 Query: 242 XXXXXXYSFVMNHMTMGRHIYALGGNEKAASLSGVKTKRVTFWVFVNMGVLAALSGLVFA 301 Y+F+ N +GR IYA+GGN AA LSGVKT+R+TF FVNMGVLAAL+GLVFA Sbjct: 253 AVLIAAYAFLTNRTVIGRQIYAVGGNRHAAKLSGVKTERLTFLTFVNMGVLAALAGLVFA 312 Query: 302 ARLNSATPKAGTNFELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLVGLGV 361 ARLN+ATPKAG FELD S++G+G+ Sbjct: 313 ARLNTATPKAGIGFELDVIAACFIGGASAYGGVGRVTGAVIGALIMGVMNNGMSILGIGI 372 Query: 362 DWQQGIKGLVLLLAVGFDIYNKSK 385 D+QQ IKG+VLL AV D+YN+ + Sbjct: 373 DYQQVIKGIVLLGAVCIDVYNQKR 396 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.326 0.140 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 424,639,036 Number of extensions: 13702448 Number of successful extensions: 59304 Number of sequences better than 1.0e-05: 699 Number of HSP's gapped: 58647 Number of HSP's successfully gapped: 927 Length of query: 387 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 260 Effective length of database: 412,420,005 Effective search space: 107229201300 Effective search space used: 107229201300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 127 (53.5 bits)