BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0487.0002.p (509 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|Q9S472|ARAG_BACST L-arabinose transport ATP-binding protein a... 737 0.0 ref|NP_244308.1| L-arabinose ABC transporter (ATP-binding protei... 717 0.0 ref|NP_626651.1| putative sugar-transport ATP binding protein [S... 690 0.0 ref|NP_826945.1| putative sugar ABC transporter ATP-binding prot... 683 0.0 ref|NP_533020.1| ABC transporter, nucleotide binding/ATPase prot... 670 0.0 >sp|Q9S472|ARAG_BACST L-arabinose transport ATP-binding protein araG gb|AAD45713.1| L-arabinose transport, ATP binding protein [Geobacillus stearothermophilus] Length = 513 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/507 (71%), Positives = 438/507 (86%) Query: 1 MSEIILEMKGITKTFPGVKALSDVNLQVKAGEIHALCGENGAGKSTLMKVLSGVYPHGTY 60 MSE ILEM+GITK FPGVKAL +VN +V+ GEIHALCGENGAGKSTLMKVLSGVYP+GTY Sbjct: 1 MSEFILEMRGITKQFPGVKALDNVNFKVREGEIHALCGENGAGKSTLMKVLSGVYPYGTY 60 Query: 61 EGDILFQGQVCQFKDIKDSESLGIVIIHQELALIPYLSISENIFLGNERARHGVINWNET 120 +G+I+F+G+VC+FK+IK SE LGIVIIHQELALIPYLSI+ENIFLGNERA+ G+INWNET Sbjct: 61 DGEIVFKGEVCKFKNIKQSEQLGIVIIHQELALIPYLSIAENIFLGNERAKKGIINWNET 120 Query: 121 TVKTKELLQTVGLSESPFTQVSAIGVGKQQLVEIAKALSKEVKLLILDEPTAALNEDDSE 180 +TK+LLQ VGL ESP T V +GVGKQQLVEIAKAL+K+VKLLILDEPTAALNEDDSE Sbjct: 121 IAQTKKLLQKVGLEESPHTLVGQLGVGKQQLVEIAKALAKDVKLLILDEPTAALNEDDSE 180 Query: 181 NLLRLILELKQRGIASIIISHKLNEIEKVADSVTILRDGQTIRTLDMKQDEVTEDVIIKG 240 NLL L+LELK++G+++IIISHKLNEI KVADS+TILRDG+TI TLDMK DEVTED II+G Sbjct: 181 NLLNLLLELKKQGLSAIIISHKLNEITKVADSITILRDGKTIETLDMKHDEVTEDRIIRG 240 Query: 241 MVGRDLTNRYPERTPNLGETIFEIRDWEVYHPTQADRKVLDNINLHIRRGEVVGIAGLMG 300 MVGRDLTNRYP RTP +GE IFE+++W VYHP ++RKVLD+INL IRRGE+VGIAGLMG Sbjct: 241 MVGRDLTNRYPARTPKIGEVIFEVKNWTVYHPIYSERKVLDHINLSIRRGEIVGIAGLMG 300 Query: 301 AGRTELAMSVFGKSYGRRISGQLYMHGTEVHLNDINKAIDSGLAYVTEDRKHYGLILIDD 360 AGRTELAMS+FG+SYG++ISG+++ +G ++ ++D++KAI +G+AYVTEDRK GLIL++D Sbjct: 301 AGRTELAMSIFGRSYGKKISGEIWKNGVKIDVSDVSKAIANGIAYVTEDRKGNGLILMED 360 Query: 361 XXXXXXXXXXXXXXXXGVINENEEVLVAEEYRRKLNIKTPSILQKTVNLSGGNQQKVVLS 420 V++EN+E++ +E +R + IKTPS+ QK LSGGNQQKVVLS Sbjct: 361 IRKNITLSRLGKISNHFVVDENQEIVESERFRDQFKIKTPSVFQKVEALSGGNQQKVVLS 420 Query: 421 KWIYAQPDILILDEPTRGIDVGAKYEIYSIINGLAAEGKGVLVISSELPEIIGMCDRIYT 480 KWI+A+PDILILDEPTRGIDVGAKYEIY+II LA GKG+L+ISSELPEI+GMCDRIY Sbjct: 421 KWIFAEPDILILDEPTRGIDVGAKYEIYTIIQQLADAGKGILMISSELPEILGMCDRIYV 480 Query: 481 MCEGRISGEVERQDASQELLMKYMTRS 507 M EGRI+GEV R++A+QE LM+ MT++ Sbjct: 481 MSEGRITGEVSREEATQEKLMRLMTKT 507 >ref|NP_244308.1| L-arabinose ABC transporter (ATP-binding protein) [Bacillus halodurans] sp|Q9K7C3|ARAG_BACHD L-arabinose transport ATP-binding protein araG pir||A84080 L-arabinose ABC transporter (ATP-binding protein) BH3441 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07160.1| L-arabinose ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 517 Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/509 (68%), Positives = 421/509 (82%) Query: 1 MSEIILEMKGITKTFPGVKALSDVNLQVKAGEIHALCGENGAGKSTLMKVLSGVYPHGTY 60 M +LEM+ ITK FPGVKAL++VNL+V+ GEIHAL GENGAGKSTLMKVLSGVYPHGTY Sbjct: 3 MPNCLLEMRNITKAFPGVKALNNVNLKVEQGEIHALVGENGAGKSTLMKVLSGVYPHGTY 62 Query: 61 EGDILFQGQVCQFKDIKDSESLGIVIIHQELALIPYLSISENIFLGNERARHGVINWNET 120 EGDILF+G+VCQFKDIK+SE LGIVIIHQELAL+P LSI+ENIFLGNE+A++GVI+WN+T Sbjct: 63 EGDILFEGRVCQFKDIKESEQLGIVIIHQELALVPELSIAENIFLGNEQAKNGVIDWNQT 122 Query: 121 TVKTKELLQTVGLSESPFTQVSAIGVGKQQLVEIAKALSKEVKLLILDEPTAALNEDDSE 180 + +LL+ VGLS+SP T IGVGKQQLVEIAKALSK+VKLLILDEPTAALNE+DS+ Sbjct: 123 ITEAAKLLKKVGLSDSPRTLAMNIGVGKQQLVEIAKALSKKVKLLILDEPTAALNEEDSQ 182 Query: 181 NLLRLILELKQRGIASIIISHKLNEIEKVADSVTILRDGQTIRTLDMKQDEVTEDVIIKG 240 NLL L+LE K++G+ SIIISHKLNEI VAD +TILRDGQ+I TL ++ EVTED IIKG Sbjct: 183 NLLHLLLEFKKQGMTSIIISHKLNEISYVADHLTILRDGQSIETLSLQSGEVTEDRIIKG 242 Query: 241 MVGRDLTNRYPERTPNLGETIFEIRDWEVYHPTQADRKVLDNINLHIRRGEVVGIAGLMG 300 MVGRDL NR+P R P +G+ I E+ W V P DR ++ ++NL+++RGE+VG+AGLMG Sbjct: 243 MVGRDLENRFPPREPKIGDVILEVNHWHVDDPLHPDRSLIKDVNLYLKRGEIVGVAGLMG 302 Query: 301 AGRTELAMSVFGKSYGRRISGQLYMHGTEVHLNDINKAIDSGLAYVTEDRKHYGLILIDD 360 AGRTELAMS+FGKSYG+ I GQL G E+ ++ + AID GLAYVTEDRK YGLILIDD Sbjct: 303 AGRTELAMSIFGKSYGKNIRGQLIKDGKEIKVHSVKDAIDHGLAYVTEDRKTYGLILIDD 362 Query: 361 XXXXXXXXXXXXXXXXGVINENEEVLVAEEYRRKLNIKTPSILQKTVNLSGGNQQKVVLS 420 GV+++ EV AE++R+K+NI+TPSI QKT NLSGGNQQKVVLS Sbjct: 363 IKHNISLTSLEKLSKNGVVDKTREVKEAEDFRKKMNIRTPSIDQKTGNLSGGNQQKVVLS 422 Query: 421 KWIYAQPDILILDEPTRGIDVGAKYEIYSIINGLAAEGKGVLVISSELPEIIGMCDRIYT 480 KWI + PDILILDEPTRGIDVGAKYEIYS+I+ LAA+GK VLVISSELPE++G+ DRIY Sbjct: 423 KWILSGPDILILDEPTRGIDVGAKYEIYSVIHELAAQGKAVLVISSELPELLGLSDRIYA 482 Query: 481 MCEGRISGEVERQDASQELLMKYMTRSRG 509 +CEGRI+GEV R++A+QE+LMKYMTR+ G Sbjct: 483 LCEGRITGEVTREEANQEILMKYMTRTGG 511 >ref|NP_626651.1| putative sugar-transport ATP binding protein [Streptomyces coelicolor A3(2)] emb|CAB62737.1| putative sugar-transport ATP binding protein [Streptomyces coelicolor A3(2)] Length = 525 Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/512 (65%), Positives = 408/512 (79%), Gaps = 4/512 (0%) Query: 1 MSEIILEMKGITKTFPGVKALSDVNLQVKAGEIHALCGENGAGKSTLMKVLSGVYPHGTY 60 M+ +LEM+ I KTFPGVKALSDV L V+ GE+HA+CGENGAGKSTLMKVLSGV+PHG+Y Sbjct: 1 MAGPVLEMRSIVKTFPGVKALSDVTLTVRQGEVHAICGENGAGKSTLMKVLSGVHPHGSY 60 Query: 61 EGDILFQGQVCQFKDIKDSESLGIVIIHQELALIPYLSISENIFLGNERARHGVINWNET 120 EGD+LF+G+ C+FKDI+ SE GIVIIHQELAL+PYLSI+ENIFLGNE A+HG+INWN+T Sbjct: 61 EGDVLFEGETCRFKDIRASEQHGIVIIHQELALVPYLSIAENIFLGNEHAKHGLINWNDT 120 Query: 121 TVKTKELLQTVGLSESPFTQVSAIGVGKQQLVEIAKALSKEVKLLILDEPTAALNEDDSE 180 ELL+ VGL E P T+V+ IGVGKQQLVEIAKALSK+VKLLILDEPTAALN++DS Sbjct: 121 LRHATELLRRVGLDEHPETRVADIGVGKQQLVEIAKALSKKVKLLILDEPTAALNDEDSG 180 Query: 181 NLLRLILELKQRGIASIIISHKLNEIEKVADSVTILRDGQTIRTLDMKQDEVTEDVIIKG 240 LL LIL+LK++GI SIIISHKLNEI +VADSVTI+RDG++I TLD+K E TED II G Sbjct: 181 KLLDLILQLKEQGITSIIISHKLNEIRRVADSVTIIRDGRSIETLDVKAAETTEDRIISG 240 Query: 241 MVGRDLTNRYPERTPNLGE----TIFEIRDWEVYHPTQADRKVLDNINLHIRRGEVVGIA 296 MVGRDL NR+PERTP+ E EIR+W V+HP RKV+D++++ +RRGE+VGIA Sbjct: 241 MVGRDLENRFPERTPHQPEEGTAPALEIRNWTVHHPIDQQRKVVDDVSIEVRRGEIVGIA 300 Query: 297 GLMGAGRTELAMSVFGKSYGRRISGQLYMHGTEVHLNDINKAIDSGLAYVTEDRKHYGLI 356 GLMGAGRTELAMSVFG++YGR G + G E+ + +A+ G+AYVTEDRKHYGL Sbjct: 301 GLMGAGRTELAMSVFGRTYGRHAGGTVLRDGHEIRTKTVPEAVGHGIAYVTEDRKHYGLN 360 Query: 357 LIDDXXXXXXXXXXXXXXXXGVINENEEVLVAEEYRRKLNIKTPSILQKTVNLSGGNQQK 416 LID GV++E+ E VAE+YR+ +NIK P++ + LSGGNQQK Sbjct: 361 LIDTINRNISLTALGKVSKRGVVDEHGERQVAEDYRKSMNIKAPTVFEPVGKLSGGNQQK 420 Query: 417 VVLSKWIYAQPDILILDEPTRGIDVGAKYEIYSIINGLAAEGKGVLVISSELPEIIGMCD 476 VVLSKWI+A P++LILDEPTRGIDVGAKYEIY++I+ LAAEGK V+ ISSELPE++GMCD Sbjct: 421 VVLSKWIFAGPEVLILDEPTRGIDVGAKYEIYTVIDRLAAEGKAVVFISSELPELLGMCD 480 Query: 477 RIYTMCEGRISGEVERQDASQELLMKYMTRSR 508 RIYTM GR++GE R +ASQE LM+ MT+ + Sbjct: 481 RIYTMAAGRLTGEFSRAEASQEALMRQMTKDK 512 >ref|NP_826945.1| putative sugar ABC transporter ATP-binding protein [Streptomyces avermitilis MA-4680] dbj|BAC73480.1| putative sugar ABC transporter ATP-binding protein [Streptomyces avermitilis MA-4680] Length = 513 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/512 (64%), Positives = 408/512 (79%), Gaps = 4/512 (0%) Query: 1 MSEIILEMKGITKTFPGVKALSDVNLQVKAGEIHALCGENGAGKSTLMKVLSGVYPHGTY 60 M+ +LEM+ I KTFPGVKALSDV L V+ GE+HA+CGENGAGKSTLMKVLSGV+PHG+Y Sbjct: 1 MAGPVLEMRSIVKTFPGVKALSDVTLTVRPGEVHAICGENGAGKSTLMKVLSGVHPHGSY 60 Query: 61 EGDILFQGQVCQFKDIKDSESLGIVIIHQELALIPYLSISENIFLGNERARHGVINWNET 120 EG++LF+G+ C+FKDI+ SE GIVIIHQELAL+PYLSI+ENIFLGNE A GVI+WN+T Sbjct: 61 EGEVLFEGETCRFKDIRASEQHGIVIIHQELALVPYLSIAENIFLGNEHAARGVISWNDT 120 Query: 121 TVKTKELLQTVGLSESPFTQVSAIGVGKQQLVEIAKALSKEVKLLILDEPTAALNEDDSE 180 L++ VGL + P T+V+ IGVGKQQLVEIAKAL+KEVKLLILDEPTAALN++DS Sbjct: 121 LKHASRLMRRVGLDDHPQTRVADIGVGKQQLVEIAKALAKEVKLLILDEPTAALNDEDSG 180 Query: 181 NLLRLILELKQRGIASIIISHKLNEIEKVADSVTILRDGQTIRTLDMKQDEVTEDVIIKG 240 L+ LILELK +GI SIIISHKLNEIE+VADSVTILRDG+TI TLD+K E TE+ II G Sbjct: 181 KLIDLILELKNQGITSIIISHKLNEIERVADSVTILRDGRTIETLDVKAPETTEERIING 240 Query: 241 MVGRDLTNRYPERTPNLGET----IFEIRDWEVYHPTQADRKVLDNINLHIRRGEVVGIA 296 MVGRDL +R+PERTP+ E EIR+W V+HP RKV+D+++L +RRGE+VGIA Sbjct: 241 MVGRDLDHRFPERTPHQPEADAAPALEIRNWTVHHPIDQQRKVVDDVSLSVRRGEIVGIA 300 Query: 297 GLMGAGRTELAMSVFGKSYGRRISGQLYMHGTEVHLNDINKAIDSGLAYVTEDRKHYGLI 356 GLMGAGRTELAMSVFG++YGR G + G E+ + +A+ G+AYVTEDRKHYGL Sbjct: 301 GLMGAGRTELAMSVFGRTYGRYAQGTVLKDGKEIRTKTVPEAVAHGIAYVTEDRKHYGLN 360 Query: 357 LIDDXXXXXXXXXXXXXXXXGVINENEEVLVAEEYRRKLNIKTPSILQKTVNLSGGNQQK 416 L+D GV++++EE VAE +R+ +NIK P++ + LSGGNQQK Sbjct: 361 LMDTIGRNISLSALGKVAKRGVVDDHEERKVAEGFRKSMNIKAPTVFEPVGRLSGGNQQK 420 Query: 417 VVLSKWIYAQPDILILDEPTRGIDVGAKYEIYSIINGLAAEGKGVLVISSELPEIIGMCD 476 VVLSKWI+A PD+LILDEPTRGIDVGAKYEIY++I+ LAAEGK V+ ISSELPE++GMCD Sbjct: 421 VVLSKWIFAGPDVLILDEPTRGIDVGAKYEIYTVIDQLAAEGKAVVFISSELPELLGMCD 480 Query: 477 RIYTMCEGRISGEVERQDASQELLMKYMTRSR 508 RIYTM GR++GEV R +A+QE+LM++MT+ + Sbjct: 481 RIYTMAAGRLTGEVPRSEATQEVLMRHMTKDK 512 >ref|NP_533020.1| ABC transporter, nucleotide binding/ATPase protein [sugar] [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||AB2865 hypothetical protein gguA [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAB51510.1| sugar transporter [Agrobacterium tumefaciens] gb|AAL43336.1| ABC transporter, nucleotide binding/ATPase protein [sugar] [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 512 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/507 (63%), Positives = 406/507 (80%) Query: 1 MSEIILEMKGITKTFPGVKALSDVNLQVKAGEIHALCGENGAGKSTLMKVLSGVYPHGTY 60 M+ ILEM+ ITKTFPGVKAL +VNL+VK GEIHAL GENGAGKSTLMKVLSGVYP GTY Sbjct: 1 MANTILEMRNITKTFPGVKALENVNLKVKEGEIHALVGENGAGKSTLMKVLSGVYPAGTY 60 Query: 61 EGDILFQGQVCQFKDIKDSESLGIVIIHQELALIPYLSISENIFLGNERARHGVINWNET 120 EG+I ++G V F+ I DSE +GI+IIHQELAL+P LSI+ENIFLGNE A +GVI+W +T Sbjct: 61 EGEIHYEGAVRNFRAINDSEDIGIIIIHQELALVPLLSIAENIFLGNEVASNGVISWQQT 120 Query: 121 TVKTKELLQTVGLSESPFTQVSAIGVGKQQLVEIAKALSKEVKLLILDEPTAALNEDDSE 180 +T+ELL+ VGL ESP T ++ IGVGKQQLVEIAKALSK VKLLILDEPTA+LNE DSE Sbjct: 121 FNRTRELLKKVGLKESPETLITDIGVGKQQLVEIAKALSKSVKLLILDEPTASLNESDSE 180 Query: 181 NLLRLILELKQRGIASIIISHKLNEIEKVADSVTILRDGQTIRTLDMKQDEVTEDVIIKG 240 LL L++E + +G+ SIII+HKLNE+ KVAD +T+LRDG T++TLD Q+E++EDVII+ Sbjct: 181 ALLNLLMEFRNQGMTSIIITHKLNEVRKVADQITVLRDGMTVKTLDCHQEEISEDVIIRN 240 Query: 241 MVGRDLTNRYPERTPNLGETIFEIRDWEVYHPTQADRKVLDNINLHIRRGEVVGIAGLMG 300 MVGRDL +RYP R +GETI E+++W YH DR+VL +IN+ +R+GEVVGIAGLMG Sbjct: 241 MVGRDLEDRYPPRDVPIGETILEVKNWNAYHQQHRDRQVLHDINVTVRKGEVVGIAGLMG 300 Query: 301 AGRTELAMSVFGKSYGRRISGQLYMHGTEVHLNDINKAIDSGLAYVTEDRKHYGLILIDD 360 AGRTE AMSVFGKSYG RI+G + + G V ++ + KAID+GLAYVTEDRKH GL+L D+ Sbjct: 301 AGRTEFAMSVFGKSYGHRITGDVLIDGKPVDVSTVRKAIDAGLAYVTEDRKHLGLVLNDN 360 Query: 361 XXXXXXXXXXXXXXXXGVINENEEVLVAEEYRRKLNIKTPSILQKTVNLSGGNQQKVVLS 420 +I++ +E+ VA ++R +L I++ I Q+TVNLSGGNQQKVVLS Sbjct: 361 ILHNTTLANLAGVSKASIIDDIKEMKVASDFRTRLRIRSSGIFQETVNLSGGNQQKVVLS 420 Query: 421 KWIYAQPDILILDEPTRGIDVGAKYEIYSIINGLAAEGKGVLVISSELPEIIGMCDRIYT 480 KW+++ PD+LILDEPTRGIDVGAKYEIY+IIN LAA+GKGVL+ISSE+PE++G CDRIY Sbjct: 421 KWLFSNPDVLILDEPTRGIDVGAKYEIYTIINQLAADGKGVLMISSEMPELLGNCDRIYV 480 Query: 481 MCEGRISGEVERQDASQELLMKYMTRS 507 M EGRI E+ + +ASQE +M+ + RS Sbjct: 481 MNEGRIVAELPKGEASQESIMRAIMRS 507 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.137 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 702,681,790 Number of extensions: 29165925 Number of successful extensions: 196941 Number of sequences better than 1.0e-05: 17885 Number of HSP's gapped: 177527 Number of HSP's successfully gapped: 22333 Length of query: 509 Length of database: 757,237,578 Length adjustment: 130 Effective length of query: 379 Effective length of database: 404,274,708 Effective search space: 153220114332 Effective search space used: 153220114332 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)