BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0486.0013.p (337 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00071415.1| COG4211: ABC-type glucose/galactose transport... 266 5e-70 ref|NP_245977.1| MglC [Pasteurella multocida] >gi|12721373|gb|AA... 251 2e-65 ref|NP_562259.1| probable galactoside ABC transporter [Clostridi... 250 4e-65 ref|NP_405095.1| galactoside permease [Yersinia pestis] >gi|4544... 248 1e-64 ref|NP_669962.1| inner membrane permease of galactoside ABC tran... 248 1e-64 >ref|ZP_00071415.1| COG4211: ABC-type glucose/galactose transport system, permease component [Trichodesmium erythraeum IMS101] Length = 334 Score = 266 bits (680), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 149/335 (44%), Positives = 188/335 (56%), Gaps = 2/335 (0%) Query: 3 VKKAQSFVTQNAXXXXXXXXXXXXXXXEPSFMSINTLRDVLIQSSTRVIIALGVAFILIT 62 +K+ +F NA P F+++N R +L Q+STR+IIALGV +LIT Sbjct: 2 IKQIINFALNNAIYLVLILLLIVITIISPDFLTVNNFRLILTQASTRIIIALGVGGVLIT 61 Query: 63 AGTDLSAGRVVGFTAVISASMLQIPDYSRRFGSGXXXXXXXXXXXXXXAIVAGLLCGLIN 122 GTDLSAGR+VG AV+SAS+LQ DY R I A G IN Sbjct: 62 QGTDLSAGRIVGVGAVLSASLLQGADYPYRMYPNLMELPLIIPMLFTLIICA--FFGFIN 119 Query: 123 GIIVSKLNVPPFIATLGTMLIVYGLNSLYFDMDPNQSQPIGGLRPDFTKIGSGFIGSGQY 182 G++V VPPFIATLGTM+I+YGLNS+YFD P +QP+GGL +FT G + G + Sbjct: 120 GVVVGMFKVPPFIATLGTMIIIYGLNSIYFDRPPLGAQPVGGLAENFTTFVQGDLILGSF 179 Query: 183 SIPYXXXXXXXXXXXXWVLFNKTKLGKNMYAIGGNMQAAKVSGINVSKNXXXXXXXXXXX 242 IPY WVL+N+T LG+NMYAIGGN++AA VSG++V K Sbjct: 180 EIPYLIIYAVIVIGVIWVLWNQTILGRNMYAIGGNIEAATVSGVSVIKYLLIVYTLAGLL 239 Query: 243 XXXXXVLEAARTGGATNNYGNMYELDAIAACXXXXXXXXXXXXXXXXXXXXXXXFTLINY 302 +LEA R G ATNN GNMYELDAIAAC F +INY Sbjct: 240 YGFAGILEAGRVGSATNNTGNMYELDAIAACVVGGVSTSGGIGTVSGVVTGVLIFQIINY 299 Query: 303 GLTFIGISPYYQLIIKGLIIIAAVSFDMRKYSSKK 337 GL FI +SPY Q I+KGLII++AV+ D+RKY + Sbjct: 300 GLVFIELSPYLQFIVKGLIIVSAVAIDIRKYVRQS 334 >ref|NP_245977.1| MglC [Pasteurella multocida] gb|AAK03124.1| MglC [Pasteurella multocida] Length = 336 Score = 251 bits (641), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 144/334 (43%), Positives = 187/334 (55%), Gaps = 4/334 (1%) Query: 4 KKAQSFVTQNAXXXXXXXXXXXXXXXEPSFMSINTLRDVLIQSSTRVIIALGVAFILITA 63 K+ F QNA +P+F+++ ++L QSS R+IIALGVA +L+T Sbjct: 7 NKSLDFFKQNAIYFVLLILLGIIIVQDPTFLNLRNFSNILTQSSVRLIIALGVAGLLVTQ 66 Query: 64 GTDLSAGRVVGFTAVISASMLQIPDYSRRFGSGXXXXXXXXXXXXXXAIVAGLLCGLING 123 GTDLSAGR VG AVISA++LQ D R AI G + GL+NG Sbjct: 67 GTDLSAGRQVGLAAVISATLLQAMDNFNRVFPDLPELPIPVVILTVCAI--GAVIGLVNG 124 Query: 124 IIVSKLNVPPFIATLGTMLIVYGLNSLYFDMDPNQSQPIGGLRPDFTKIGSGFIGSGQYS 183 ++++ LNV PFIAT+GTM+IVYG+NSLY+ D PI G F+ GF G + Sbjct: 125 LVIAYLNVTPFIATMGTMIIVYGINSLYY--DAVGGSPIAGFNETFSTFAQGFFKFGSFK 182 Query: 184 IPYXXXXXXXXXXXXWVLFNKTKLGKNMYAIGGNMQAAKVSGINVSKNXXXXXXXXXXXX 243 + Y WVL+NKT+ GKN++AIGGN +AA+VSG+NV++N Sbjct: 183 LSYITIYAAVATFLVWVLWNKTRFGKNIFAIGGNPEAARVSGVNVARNLVVIYMIAGMFY 242 Query: 244 XXXXVLEAARTGGATNNYGNMYELDAIAACXXXXXXXXXXXXXXXXXXXXXXXFTLINYG 303 +LEA R G ATNN G MYELDAIAAC FT+INYG Sbjct: 243 GFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFAGGVGTVIGVVTGVIIFTVINYG 302 Query: 304 LTFIGISPYYQLIIKGLIIIAAVSFDMRKYSSKK 337 LT+IG++PY+Q IIKG III AV+ D KY+ KK Sbjct: 303 LTYIGVNPYWQYIIKGSIIILAVAIDSLKYAKKK 336 >ref|NP_562259.1| probable galactoside ABC transporter [Clostridium perfringens] dbj|BAB81049.1| probable galactoside ABC transporter [Clostridium perfringens str. 13] Length = 342 Score = 250 bits (638), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 142/308 (46%), Positives = 174/308 (56%), Gaps = 3/308 (0%) Query: 30 EPSFMSINTLRDVLIQSSTRVIIALGVAFILITAGTDLSAGRVVGFTAVISASMLQIPDY 89 P F+S+ ++L QSS+R+IIALGV IL+T GTDLSAGR VG AV+SAS+LQ DY Sbjct: 36 SPDFLSLKNFINILSQSSSRIIIALGVGGILLTEGTDLSAGRTVGLAAVVSASLLQAGDY 95 Query: 90 SRRFGSGXXXXXXXXXXXXXXAIVAGLLCGLINGIIVSKLNVPPFIATLGTMLIVYGLNS 149 + + A+ + GL+NG++VSK NVPPFIATLG M +YGLNS Sbjct: 96 AYKMYPNLPELPIFIPILIAMAVCG--IVGLVNGLVVSKFNVPPFIATLGMMTGIYGLNS 153 Query: 150 LYFDMDPNQSQPIGGLRPDFTKIGSGFIG-SGQYSIPYXXXXXXXXXXXXWVLFNKTKLG 208 +YFD P + PIGGL F+ G I G IPY W L+NKTK G Sbjct: 154 IYFDRPPYGAMPIGGLSQSFSNFTLGSIPIYGNIKIPYLVIYAIIVIAVIWTLWNKTKFG 213 Query: 209 KNMYAIGGNMQAAKVSGINVSKNXXXXXXXXXXXXXXXXVLEAARTGGATNNYGNMYELD 268 KN+YAIGGN +AA VSG+NV + LEA R G AT + G MYELD Sbjct: 214 KNLYAIGGNREAAVVSGVNVVRTLLLVYMLAGVLYGFAGTLEAGRVGSATASTGEMYELD 273 Query: 269 AIAACXXXXXXXXXXXXXXXXXXXXXXXFTLINYGLTFIGISPYYQLIIKGLIIIAAVSF 328 AIA+C F +INYGL FIG+SPY Q +IKGLII+ AV+ Sbjct: 274 AIASCVVGGVSTAGGVGTVPGIVTGVLIFQVINYGLAFIGVSPYLQFVIKGLIIVLAVAL 333 Query: 329 DMRKYSSK 336 DMRKY K Sbjct: 334 DMRKYMKK 341 >ref|NP_405095.1| galactoside permease [Yersinia pestis] ref|NP_992763.1| galactoside permease [Yersinia pestis biovar Mediaevails str. 91001] pir||AI0183 galactoside permease [imported] - Yersinia pestis (strain CO92) emb|CAC90332.1| galactoside permease [Yersinia pestis CO92] gb|AAS61640.1| galactoside permease [Yersinia pestis biovar Mediaevails str. 91001] Length = 336 Score = 248 bits (634), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 142/308 (46%), Positives = 181/308 (58%), Gaps = 4/308 (1%) Query: 30 EPSFMSINTLRDVLIQSSTRVIIALGVAFILITAGTDLSAGRVVGFTAVISASMLQIPDY 89 +P+F+S+ L ++L QSS R+IIALGVA +++T GTDLSAGR VG AV++A+MLQ D Sbjct: 33 DPTFLSLMNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATMLQSMDN 92 Query: 90 SRRFGSGXXXXXXXXXXXXXXAIVAGLLCGLINGIIVSKLNVPPFIATLGTMLIVYGLNS 149 + I G + GLINGII++ LNV PFI TLGTM+IVYG+NS Sbjct: 93 VNKVFPDLQTVPIPVVILVVCLI--GAVIGLINGIIIAYLNVTPFITTLGTMIIVYGVNS 150 Query: 150 LYFDMDPNQSQPIGGLRPDFTKIGSGFIGSGQYSIPYXXXXXXXXXXXXWVLFNKTKLGK 209 LY+D + PI G P F+ GF+ G + + Y WVL+NKT+ GK Sbjct: 151 LYYDFV--GASPIAGFDPAFSTFAQGFLRFGDFKLSYITFYALIAIMFVWVLWNKTRFGK 208 Query: 210 NMYAIGGNMQAAKVSGINVSKNXXXXXXXXXXXXXXXXVLEAARTGGATNNYGNMYELDA 269 N++AIGGN +AAKVSG+NV N +LEA R G ATNN G MYELDA Sbjct: 209 NIFAIGGNPEAAKVSGVNVPLNLIMIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDA 268 Query: 270 IAACXXXXXXXXXXXXXXXXXXXXXXXFTLINYGLTFIGISPYYQLIIKGLIIIAAVSFD 329 IAAC FT+INYGLT+IG++PY+Q IIKG III AV+ D Sbjct: 269 IAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGGIIIFAVALD 328 Query: 330 MRKYSSKK 337 KY+ KK Sbjct: 329 SLKYAKKK 336 >ref|NP_669962.1| inner membrane permease of galactoside ABC transporter [Yersinia pestis KIM] gb|AAM86213.1| inner membrane permease of galactoside ABC transporter [Yersinia pestis KIM] Length = 341 Score = 248 bits (634), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 142/308 (46%), Positives = 181/308 (58%), Gaps = 4/308 (1%) Query: 30 EPSFMSINTLRDVLIQSSTRVIIALGVAFILITAGTDLSAGRVVGFTAVISASMLQIPDY 89 +P+F+S+ L ++L QSS R+IIALGVA +++T GTDLSAGR VG AV++A+MLQ D Sbjct: 38 DPTFLSLMNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATMLQSMDN 97 Query: 90 SRRFGSGXXXXXXXXXXXXXXAIVAGLLCGLINGIIVSKLNVPPFIATLGTMLIVYGLNS 149 + I G + GLINGII++ LNV PFI TLGTM+IVYG+NS Sbjct: 98 VNKVFPDLQTVPIPVVILVVCLI--GAVIGLINGIIIAYLNVTPFITTLGTMIIVYGVNS 155 Query: 150 LYFDMDPNQSQPIGGLRPDFTKIGSGFIGSGQYSIPYXXXXXXXXXXXXWVLFNKTKLGK 209 LY+D + PI G P F+ GF+ G + + Y WVL+NKT+ GK Sbjct: 156 LYYDFV--GASPIAGFDPAFSTFAQGFLRFGDFKLSYITFYALIAIMFVWVLWNKTRFGK 213 Query: 210 NMYAIGGNMQAAKVSGINVSKNXXXXXXXXXXXXXXXXVLEAARTGGATNNYGNMYELDA 269 N++AIGGN +AAKVSG+NV N +LEA R G ATNN G MYELDA Sbjct: 214 NIFAIGGNPEAAKVSGVNVPLNLIMIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDA 273 Query: 270 IAACXXXXXXXXXXXXXXXXXXXXXXXFTLINYGLTFIGISPYYQLIIKGLIIIAAVSFD 329 IAAC FT+INYGLT+IG++PY+Q IIKG III AV+ D Sbjct: 274 IAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGGIIIFAVALD 333 Query: 330 MRKYSSKK 337 KY+ KK Sbjct: 334 SLKYAKKK 341 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.139 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 345,558,691 Number of extensions: 11505438 Number of successful extensions: 25393 Number of sequences better than 1.0e-05: 599 Number of HSP's gapped: 24208 Number of HSP's successfully gapped: 607 Length of query: 337 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 211 Effective length of database: 415,135,104 Effective search space: 87593506944 Effective search space used: 87593506944 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)